Experiment: Pyruvate-Sulfate (60-15mM) with Tungstate 2mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0351 and lpsC are separated by 7 nucleotides lpsC and DVU0353 are separated by 133 nucleotides
DVU0351: DVU0351 - cytidine 5monophosphate N-acetylneuraminic acid synthetase, putative/polysaccharide biosynthesis protein (TIGR), at 397,873 to 399,507
DVU0351
DVU0352: lpsC - aminotransferase, DegT/DnrJ/EryC1/StrS family (TIGR), at 399,515 to 400,696
lpsC
DVU0353: DVU0353 - alcohol dehydrogenase, iron-containing (TIGR), at 400,830 to 401,903
DVU0353
Position (kb) 399
400
401 Strain fitness (log2 ratio) -1
0
1
2 at 398.516 kb on + strand, within DVU0351 at 398.630 kb on + strand, within DVU0351 at 398.638 kb on - strand, within DVU0351 at 398.671 kb on + strand, within DVU0351 at 398.824 kb on - strand, within DVU0351 at 398.824 kb on - strand, within DVU0351 at 398.829 kb on - strand, within DVU0351 at 398.975 kb on - strand, within DVU0351 at 398.985 kb on - strand, within DVU0351 at 398.990 kb on - strand, within DVU0351 at 399.008 kb on + strand, within DVU0351 at 399.013 kb on + strand, within DVU0351 at 399.016 kb on - strand, within DVU0351 at 399.041 kb on - strand, within DVU0351 at 399.141 kb on + strand, within DVU0351 at 399.240 kb on - strand, within DVU0351 at 399.285 kb on + strand, within DVU0351 at 399.293 kb on - strand, within DVU0351 at 399.463 kb on + strand at 399.484 kb on - strand at 399.580 kb on + strand at 399.598 kb on - strand at 399.698 kb on + strand, within lpsC at 399.698 kb on + strand, within lpsC at 399.708 kb on + strand, within lpsC at 399.713 kb on + strand, within lpsC at 399.713 kb on + strand, within lpsC at 399.713 kb on + strand, within lpsC at 399.721 kb on - strand, within lpsC at 399.721 kb on - strand, within lpsC at 399.787 kb on + strand, within lpsC at 399.788 kb on - strand, within lpsC at 399.888 kb on - strand, within lpsC at 399.911 kb on - strand, within lpsC at 399.913 kb on + strand, within lpsC at 400.085 kb on - strand, within lpsC at 400.102 kb on - strand, within lpsC at 400.139 kb on - strand, within lpsC at 400.187 kb on - strand, within lpsC at 400.204 kb on - strand, within lpsC at 400.209 kb on + strand, within lpsC at 400.209 kb on + strand, within lpsC at 400.217 kb on - strand, within lpsC at 400.217 kb on - strand, within lpsC at 400.243 kb on + strand, within lpsC at 400.262 kb on + strand, within lpsC at 400.314 kb on - strand, within lpsC at 400.317 kb on + strand, within lpsC at 400.386 kb on - strand, within lpsC at 400.389 kb on + strand, within lpsC at 400.407 kb on - strand, within lpsC at 400.422 kb on + strand, within lpsC at 400.427 kb on + strand, within lpsC at 400.454 kb on + strand, within lpsC at 400.490 kb on - strand, within lpsC at 400.536 kb on - strand, within lpsC at 400.543 kb on - strand, within lpsC at 400.597 kb on + strand at 400.655 kb on + strand at 400.663 kb on - strand at 400.713 kb on - strand at 400.794 kb on - strand at 400.802 kb on - strand at 400.837 kb on + strand at 400.837 kb on + strand at 400.837 kb on + strand at 400.866 kb on + strand at 400.874 kb on - strand at 400.874 kb on - strand at 400.957 kb on + strand, within DVU0353 at 400.969 kb on + strand, within DVU0353 at 400.978 kb on + strand, within DVU0353 at 400.978 kb on + strand, within DVU0353 at 400.978 kb on + strand, within DVU0353 at 400.978 kb on + strand, within DVU0353 at 400.978 kb on + strand, within DVU0353 at 400.978 kb on + strand, within DVU0353 at 400.978 kb on + strand, within DVU0353 at 400.978 kb on + strand, within DVU0353 at 400.978 kb on + strand, within DVU0353 at 400.978 kb on + strand, within DVU0353 at 400.978 kb on + strand, within DVU0353 at 400.986 kb on - strand, within DVU0353 at 400.986 kb on - strand, within DVU0353 at 400.986 kb on - strand, within DVU0353 at 400.986 kb on - strand, within DVU0353 at 400.986 kb on - strand, within DVU0353 at 400.986 kb on - strand, within DVU0353 at 400.986 kb on - strand, within DVU0353 at 400.986 kb on - strand, within DVU0353 at 400.986 kb on - strand, within DVU0353 at 400.988 kb on + strand, within DVU0353 at 400.988 kb on + strand, within DVU0353 at 400.996 kb on - strand, within DVU0353 at 401.002 kb on + strand, within DVU0353 at 401.033 kb on + strand, within DVU0353 at 401.038 kb on + strand, within DVU0353 at 401.046 kb on - strand, within DVU0353 at 401.046 kb on - strand, within DVU0353 at 401.046 kb on - strand, within DVU0353 at 401.084 kb on + strand, within DVU0353 at 401.094 kb on + strand, within DVU0353 at 401.129 kb on - strand, within DVU0353 at 401.130 kb on + strand, within DVU0353 at 401.176 kb on + strand, within DVU0353 at 401.184 kb on - strand, within DVU0353 at 401.184 kb on - strand, within DVU0353 at 401.312 kb on + strand, within DVU0353 at 401.330 kb on - strand, within DVU0353 at 401.369 kb on + strand, within DVU0353 at 401.369 kb on + strand, within DVU0353 at 401.369 kb on + strand, within DVU0353 at 401.369 kb on + strand, within DVU0353 at 401.372 kb on - strand, within DVU0353 at 401.376 kb on + strand, within DVU0353 at 401.412 kb on + strand, within DVU0353 at 401.421 kb on - strand, within DVU0353 at 401.505 kb on + strand, within DVU0353 at 401.515 kb on + strand, within DVU0353 at 401.540 kb on - strand, within DVU0353 at 401.547 kb on + strand, within DVU0353 at 401.555 kb on - strand, within DVU0353 at 401.571 kb on - strand, within DVU0353 at 401.595 kb on - strand, within DVU0353 at 401.598 kb on + strand, within DVU0353 at 401.606 kb on - strand, within DVU0353 at 401.635 kb on - strand, within DVU0353
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate-Sulfate (60-15mM) with Tungstate 2mM remove 398,516 + DVU0351 0.39 +0.7 398,630 + DVU0351 0.46 +0.4 398,638 - DVU0351 0.47 +0.2 398,671 + DVU0351 0.49 +1.2 398,824 - DVU0351 0.58 -0.0 398,824 - DVU0351 0.58 +0.3 398,829 - DVU0351 0.58 +0.7 398,975 - DVU0351 0.67 +1.6 398,985 - DVU0351 0.68 +2.0 398,990 - DVU0351 0.68 +1.8 399,008 + DVU0351 0.69 +0.6 399,013 + DVU0351 0.70 -0.8 399,016 - DVU0351 0.70 -0.3 399,041 - DVU0351 0.71 +0.3 399,141 + DVU0351 0.78 -0.4 399,240 - DVU0351 0.84 +1.0 399,285 + DVU0351 0.86 +1.7 399,293 - DVU0351 0.87 +0.0 399,463 + +0.2 399,484 - +0.7 399,580 + +1.2 399,598 - -0.1 399,698 + lpsC DVU0352 0.15 +0.9 399,698 + lpsC DVU0352 0.15 +0.3 399,708 + lpsC DVU0352 0.16 -0.3 399,713 + lpsC DVU0352 0.17 +0.0 399,713 + lpsC DVU0352 0.17 +0.7 399,713 + lpsC DVU0352 0.17 +0.5 399,721 - lpsC DVU0352 0.17 +2.1 399,721 - lpsC DVU0352 0.17 +1.5 399,787 + lpsC DVU0352 0.23 +0.9 399,788 - lpsC DVU0352 0.23 +1.3 399,888 - lpsC DVU0352 0.32 +1.0 399,911 - lpsC DVU0352 0.34 +1.3 399,913 + lpsC DVU0352 0.34 +1.0 400,085 - lpsC DVU0352 0.48 +0.8 400,102 - lpsC DVU0352 0.50 +1.1 400,139 - lpsC DVU0352 0.53 +1.0 400,187 - lpsC DVU0352 0.57 +0.6 400,204 - lpsC DVU0352 0.58 +1.2 400,209 + lpsC DVU0352 0.59 +0.4 400,209 + lpsC DVU0352 0.59 +0.2 400,217 - lpsC DVU0352 0.59 +0.6 400,217 - lpsC DVU0352 0.59 +0.3 400,243 + lpsC DVU0352 0.62 +0.2 400,262 + lpsC DVU0352 0.63 +0.8 400,314 - lpsC DVU0352 0.68 +1.0 400,317 + lpsC DVU0352 0.68 +0.6 400,386 - lpsC DVU0352 0.74 +0.9 400,389 + lpsC DVU0352 0.74 -0.3 400,407 - lpsC DVU0352 0.75 +0.8 400,422 + lpsC DVU0352 0.77 +0.6 400,427 + lpsC DVU0352 0.77 +0.8 400,454 + lpsC DVU0352 0.79 -0.1 400,490 - lpsC DVU0352 0.82 +0.5 400,536 - lpsC DVU0352 0.86 +0.3 400,543 - lpsC DVU0352 0.87 +0.0 400,597 + +0.6 400,655 + +0.9 400,663 - +0.9 400,713 - -0.6 400,794 - -0.8 400,802 - +1.8 400,837 + +0.9 400,837 + +0.9 400,837 + +0.6 400,866 + +0.4 400,874 - +1.0 400,874 - +1.3 400,957 + DVU0353 0.12 +1.3 400,969 + DVU0353 0.13 +1.3 400,978 + DVU0353 0.14 +0.5 400,978 + DVU0353 0.14 +2.4 400,978 + DVU0353 0.14 +1.4 400,978 + DVU0353 0.14 +0.9 400,978 + DVU0353 0.14 +1.3 400,978 + DVU0353 0.14 +1.1 400,978 + DVU0353 0.14 +1.3 400,978 + DVU0353 0.14 +0.3 400,978 + DVU0353 0.14 +1.0 400,978 + DVU0353 0.14 +0.2 400,978 + DVU0353 0.14 +0.5 400,986 - DVU0353 0.15 +2.4 400,986 - DVU0353 0.15 +1.5 400,986 - DVU0353 0.15 +0.9 400,986 - DVU0353 0.15 +0.8 400,986 - DVU0353 0.15 +0.6 400,986 - DVU0353 0.15 -0.1 400,986 - DVU0353 0.15 +1.3 400,986 - DVU0353 0.15 +1.5 400,986 - DVU0353 0.15 +2.5 400,988 + DVU0353 0.15 +0.7 400,988 + DVU0353 0.15 +0.8 400,996 - DVU0353 0.15 +1.1 401,002 + DVU0353 0.16 +0.8 401,033 + DVU0353 0.19 +0.4 401,038 + DVU0353 0.19 +0.6 401,046 - DVU0353 0.20 +0.1 401,046 - DVU0353 0.20 +0.6 401,046 - DVU0353 0.20 +1.2 401,084 + DVU0353 0.24 +0.9 401,094 + DVU0353 0.25 +1.0 401,129 - DVU0353 0.28 +0.8 401,130 + DVU0353 0.28 +0.5 401,176 + DVU0353 0.32 +0.8 401,184 - DVU0353 0.33 +1.5 401,184 - DVU0353 0.33 +1.1 401,312 + DVU0353 0.45 +1.3 401,330 - DVU0353 0.47 +0.8 401,369 + DVU0353 0.50 +0.9 401,369 + DVU0353 0.50 +0.8 401,369 + DVU0353 0.50 -1.2 401,369 + DVU0353 0.50 +0.6 401,372 - DVU0353 0.50 +1.1 401,376 + DVU0353 0.51 +1.2 401,412 + DVU0353 0.54 +0.7 401,421 - DVU0353 0.55 +0.9 401,505 + DVU0353 0.63 +1.0 401,515 + DVU0353 0.64 +1.1 401,540 - DVU0353 0.66 +2.1 401,547 + DVU0353 0.67 +0.4 401,555 - DVU0353 0.68 +1.2 401,571 - DVU0353 0.69 +0.2 401,595 - DVU0353 0.71 +0.7 401,598 + DVU0353 0.72 +0.9 401,606 - DVU0353 0.72 +1.1 401,635 - DVU0353 0.75 +2.1
Or see this region's nucleotide sequence