Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0331

Experiment: Pyruvate-Sulfate (60-15mM) with Tungstate 2mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0330 and DVU0331 overlap by 1 nucleotidesDVU0331 and DVU0333 are separated by 211 nucleotidesDVU0333 and DVU0334 overlap by 44 nucleotides DVU0330: DVU0330 - response regulator (TIGR), at 372,996 to 374,234 DVU0330 DVU0331: DVU0331 - sensory box histidine kinase, putative (TIGR), at 374,234 to 377,155 DVU0331 DVU0333: DVU0333 - hypothetical protein (TIGR), at 377,367 to 378,023 DVU0333 DVU0334: DVU0334 - D-alanine--D-alanine ligase (TIGR), at 377,980 to 378,891 DVU0334 Position (kb) 374 375 376 377 378Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 373.245 kb on + strand, within DVU0330at 373.254 kb on - strand, within DVU0330at 373.266 kb on - strand, within DVU0330at 373.312 kb on + strand, within DVU0330at 373.312 kb on + strand, within DVU0330at 373.315 kb on - strand, within DVU0330at 373.320 kb on - strand, within DVU0330at 373.386 kb on - strand, within DVU0330at 373.409 kb on + strand, within DVU0330at 373.417 kb on - strand, within DVU0330at 373.465 kb on + strand, within DVU0330at 373.473 kb on - strand, within DVU0330at 373.497 kb on - strand, within DVU0330at 373.505 kb on + strand, within DVU0330at 373.505 kb on + strand, within DVU0330at 373.512 kb on + strand, within DVU0330at 373.579 kb on + strand, within DVU0330at 373.586 kb on + strand, within DVU0330at 373.603 kb on + strand, within DVU0330at 373.606 kb on - strand, within DVU0330at 373.608 kb on + strand, within DVU0330at 373.616 kb on - strand, within DVU0330at 373.646 kb on - strand, within DVU0330at 373.715 kb on + strand, within DVU0330at 373.717 kb on + strand, within DVU0330at 373.723 kb on - strand, within DVU0330at 373.725 kb on - strand, within DVU0330at 373.747 kb on - strand, within DVU0330at 373.760 kb on + strand, within DVU0330at 373.768 kb on - strand, within DVU0330at 373.768 kb on - strand, within DVU0330at 373.810 kb on - strand, within DVU0330at 373.857 kb on + strand, within DVU0330at 373.880 kb on + strand, within DVU0330at 373.979 kb on - strand, within DVU0330at 374.020 kb on + strand, within DVU0330at 374.020 kb on + strand, within DVU0330at 374.057 kb on - strand, within DVU0330at 374.162 kb on - strandat 374.203 kb on - strandat 374.203 kb on - strandat 374.203 kb on - strandat 374.225 kb on - strandat 374.239 kb on - strandat 374.365 kb on + strandat 374.375 kb on - strandat 374.411 kb on + strandat 374.431 kb on - strandat 374.470 kb on - strandat 374.470 kb on - strandat 374.522 kb on + strandat 374.564 kb on - strand, within DVU0331at 374.569 kb on - strand, within DVU0331at 374.570 kb on + strand, within DVU0331at 374.570 kb on + strand, within DVU0331at 374.588 kb on - strand, within DVU0331at 374.599 kb on + strand, within DVU0331at 374.687 kb on + strand, within DVU0331at 374.796 kb on - strand, within DVU0331at 374.838 kb on - strand, within DVU0331at 374.846 kb on + strand, within DVU0331at 374.907 kb on + strand, within DVU0331at 374.907 kb on + strand, within DVU0331at 374.907 kb on + strand, within DVU0331at 374.909 kb on + strand, within DVU0331at 374.915 kb on - strand, within DVU0331at 374.915 kb on - strand, within DVU0331at 374.931 kb on + strand, within DVU0331at 374.990 kb on + strand, within DVU0331at 375.021 kb on - strand, within DVU0331at 375.093 kb on + strand, within DVU0331at 375.209 kb on + strand, within DVU0331at 375.259 kb on + strand, within DVU0331at 375.277 kb on + strand, within DVU0331at 375.358 kb on - strand, within DVU0331at 375.391 kb on - strand, within DVU0331at 375.391 kb on - strand, within DVU0331at 375.410 kb on - strand, within DVU0331at 375.412 kb on - strand, within DVU0331at 375.449 kb on - strand, within DVU0331at 375.449 kb on - strand, within DVU0331at 375.451 kb on + strand, within DVU0331at 375.456 kb on - strand, within DVU0331at 375.490 kb on - strand, within DVU0331at 375.497 kb on + strand, within DVU0331at 375.509 kb on + strand, within DVU0331at 375.517 kb on - strand, within DVU0331at 375.551 kb on + strand, within DVU0331at 375.579 kb on + strand, within DVU0331at 375.708 kb on - strand, within DVU0331at 375.733 kb on + strand, within DVU0331at 375.741 kb on + strand, within DVU0331at 375.749 kb on - strand, within DVU0331at 375.756 kb on - strand, within DVU0331at 375.760 kb on + strand, within DVU0331at 375.766 kb on - strand, within DVU0331at 375.770 kb on + strand, within DVU0331at 375.828 kb on - strand, within DVU0331at 375.845 kb on - strand, within DVU0331at 375.860 kb on + strand, within DVU0331at 375.860 kb on + strand, within DVU0331at 375.860 kb on + strand, within DVU0331at 375.868 kb on - strand, within DVU0331at 375.868 kb on - strand, within DVU0331at 375.918 kb on - strand, within DVU0331at 375.943 kb on - strand, within DVU0331at 376.023 kb on - strand, within DVU0331at 376.028 kb on - strand, within DVU0331at 376.137 kb on - strand, within DVU0331at 376.139 kb on + strand, within DVU0331at 376.148 kb on - strand, within DVU0331at 376.332 kb on + strand, within DVU0331at 376.333 kb on - strand, within DVU0331at 376.478 kb on - strand, within DVU0331at 376.614 kb on + strand, within DVU0331at 376.638 kb on - strand, within DVU0331at 376.667 kb on + strand, within DVU0331at 376.668 kb on - strand, within DVU0331at 376.668 kb on - strand, within DVU0331at 376.675 kb on + strand, within DVU0331at 376.675 kb on + strand, within DVU0331at 376.675 kb on + strand, within DVU0331at 376.683 kb on - strand, within DVU0331at 376.683 kb on - strand, within DVU0331at 376.702 kb on + strand, within DVU0331at 376.712 kb on + strand, within DVU0331at 376.715 kb on - strand, within DVU0331at 376.720 kb on - strand, within DVU0331at 376.762 kb on + strand, within DVU0331at 376.900 kb on - strandat 376.922 kb on + strandat 376.956 kb on + strandat 376.956 kb on + strandat 376.956 kb on + strandat 376.956 kb on + strandat 376.956 kb on + strandat 376.956 kb on + strandat 376.956 kb on + strandat 376.964 kb on - strandat 376.964 kb on - strandat 377.124 kb on + strandat 377.132 kb on - strandat 377.222 kb on + strandat 377.292 kb on + strandat 377.306 kb on - strandat 377.402 kb on + strandat 377.405 kb on - strandat 377.436 kb on + strand, within DVU0333at 377.504 kb on + strand, within DVU0333at 377.594 kb on - strand, within DVU0333at 377.643 kb on + strand, within DVU0333at 377.656 kb on + strand, within DVU0333at 377.656 kb on - strand, within DVU0333at 377.656 kb on - strand, within DVU0333at 377.738 kb on - strand, within DVU0333at 377.767 kb on - strand, within DVU0333at 377.773 kb on + strand, within DVU0333at 377.820 kb on - strand, within DVU0333

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfate (60-15mM) with Tungstate 2mM
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373,245 + DVU0330 0.20 -2.5
373,254 - DVU0330 0.21 -2.9
373,266 - DVU0330 0.22 -3.2
373,312 + DVU0330 0.26 -4.1
373,312 + DVU0330 0.26 -1.1
373,315 - DVU0330 0.26 -2.7
373,320 - DVU0330 0.26 -3.0
373,386 - DVU0330 0.31 -3.2
373,409 + DVU0330 0.33 -3.3
373,417 - DVU0330 0.34 -1.4
373,465 + DVU0330 0.38 -3.2
373,473 - DVU0330 0.38 -2.9
373,497 - DVU0330 0.40 -1.9
373,505 + DVU0330 0.41 -4.2
373,505 + DVU0330 0.41 +0.8
373,512 + DVU0330 0.42 -2.0
373,579 + DVU0330 0.47 -2.4
373,586 + DVU0330 0.48 -1.6
373,603 + DVU0330 0.49 -2.2
373,606 - DVU0330 0.49 -0.2
373,608 + DVU0330 0.49 -4.0
373,616 - DVU0330 0.50 -3.2
373,646 - DVU0330 0.52 -4.6
373,715 + DVU0330 0.58 -3.9
373,717 + DVU0330 0.58 -2.6
373,723 - DVU0330 0.59 -1.3
373,725 - DVU0330 0.59 -0.3
373,747 - DVU0330 0.61 -1.8
373,760 + DVU0330 0.62 -1.1
373,768 - DVU0330 0.62 -4.5
373,768 - DVU0330 0.62 -0.6
373,810 - DVU0330 0.66 -3.0
373,857 + DVU0330 0.69 +0.1
373,880 + DVU0330 0.71 -2.1
373,979 - DVU0330 0.79 -4.5
374,020 + DVU0330 0.83 -3.6
374,020 + DVU0330 0.83 -3.9
374,057 - DVU0330 0.86 -0.4
374,162 - -3.2
374,203 - -3.6
374,203 - -3.2
374,203 - -3.3
374,225 - -3.2
374,239 - -3.2
374,365 + -0.2
374,375 - -0.1
374,411 + -0.7
374,431 - -0.3
374,470 - +0.2
374,470 - +0.6
374,522 + -2.4
374,564 - DVU0331 0.11 +0.9
374,569 - DVU0331 0.11 +0.3
374,570 + DVU0331 0.11 -2.1
374,570 + DVU0331 0.11 -1.9
374,588 - DVU0331 0.12 +0.1
374,599 + DVU0331 0.12 -1.6
374,687 + DVU0331 0.16 -0.5
374,796 - DVU0331 0.19 -0.8
374,838 - DVU0331 0.21 -1.8
374,846 + DVU0331 0.21 -2.6
374,907 + DVU0331 0.23 +0.8
374,907 + DVU0331 0.23 +0.6
374,907 + DVU0331 0.23 -1.5
374,909 + DVU0331 0.23 -0.6
374,915 - DVU0331 0.23 +0.0
374,915 - DVU0331 0.23 -2.2
374,931 + DVU0331 0.24 -1.6
374,990 + DVU0331 0.26 -2.2
375,021 - DVU0331 0.27 -1.1
375,093 + DVU0331 0.29 -1.1
375,209 + DVU0331 0.33 -1.7
375,259 + DVU0331 0.35 -1.3
375,277 + DVU0331 0.36 -1.9
375,358 - DVU0331 0.38 -0.6
375,391 - DVU0331 0.40 -0.6
375,391 - DVU0331 0.40 -1.2
375,410 - DVU0331 0.40 -0.4
375,412 - DVU0331 0.40 -0.9
375,449 - DVU0331 0.42 +0.4
375,449 - DVU0331 0.42 -0.8
375,451 + DVU0331 0.42 +1.1
375,456 - DVU0331 0.42 +0.8
375,490 - DVU0331 0.43 -1.3
375,497 + DVU0331 0.43 -2.0
375,509 + DVU0331 0.44 -0.7
375,517 - DVU0331 0.44 -2.4
375,551 + DVU0331 0.45 -1.6
375,579 + DVU0331 0.46 -2.5
375,708 - DVU0331 0.50 -1.5
375,733 + DVU0331 0.51 -2.3
375,741 + DVU0331 0.52 -2.2
375,749 - DVU0331 0.52 -0.4
375,756 - DVU0331 0.52 -1.0
375,760 + DVU0331 0.52 -2.2
375,766 - DVU0331 0.52 -3.1
375,770 + DVU0331 0.53 -0.0
375,828 - DVU0331 0.55 -0.7
375,845 - DVU0331 0.55 -2.1
375,860 + DVU0331 0.56 -2.3
375,860 + DVU0331 0.56 -1.4
375,860 + DVU0331 0.56 -0.2
375,868 - DVU0331 0.56 -2.5
375,868 - DVU0331 0.56 -2.0
375,918 - DVU0331 0.58 -2.6
375,943 - DVU0331 0.58 -2.0
376,023 - DVU0331 0.61 +1.4
376,028 - DVU0331 0.61 -0.9
376,137 - DVU0331 0.65 -2.0
376,139 + DVU0331 0.65 -0.6
376,148 - DVU0331 0.66 -1.8
376,332 + DVU0331 0.72 +1.4
376,333 - DVU0331 0.72 -2.4
376,478 - DVU0331 0.77 -1.2
376,614 + DVU0331 0.81 -0.8
376,638 - DVU0331 0.82 -3.1
376,667 + DVU0331 0.83 -1.5
376,668 - DVU0331 0.83 -3.7
376,668 - DVU0331 0.83 -2.0
376,675 + DVU0331 0.84 +0.1
376,675 + DVU0331 0.84 -4.4
376,675 + DVU0331 0.84 -1.7
376,683 - DVU0331 0.84 -2.5
376,683 - DVU0331 0.84 -3.0
376,702 + DVU0331 0.84 -2.6
376,712 + DVU0331 0.85 -3.1
376,715 - DVU0331 0.85 -0.6
376,720 - DVU0331 0.85 -1.1
376,762 + DVU0331 0.87 -3.1
376,900 - -3.2
376,922 + -2.7
376,956 + -2.3
376,956 + -1.4
376,956 + -3.0
376,956 + -2.3
376,956 + -0.4
376,956 + +0.6
376,956 + -3.4
376,964 - +0.6
376,964 - -1.4
377,124 + -3.9
377,132 - -0.3
377,222 + -0.7
377,292 + +0.6
377,306 - -1.0
377,402 + +0.4
377,405 - +0.3
377,436 + DVU0333 0.11 +0.5
377,504 + DVU0333 0.21 -0.2
377,594 - DVU0333 0.35 +0.1
377,643 + DVU0333 0.42 +0.6
377,656 + DVU0333 0.44 -0.2
377,656 - DVU0333 0.44 -0.1
377,656 - DVU0333 0.44 +1.0
377,738 - DVU0333 0.56 +0.4
377,767 - DVU0333 0.61 +0.9
377,773 + DVU0333 0.62 +2.4
377,820 - DVU0333 0.69 -0.7

Or see this region's nucleotide sequence