Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1464

Experiment: Pyruvate-Sulfate (60-15mM) with Tungstate 2mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1462 and cysG-1 are separated by 85 nucleotidescysG-1 and DVU1464 are separated by 122 nucleotidesDVU1464 and DVU1465 are separated by 43 nucleotides DVU1462: DVU1462 - cytochrome c assembly protein, putative (TIGR), at 1,541,371 to 1,542,102 DVU1462 DVU1463: cysG-1 - siroheme synthase, N-terminal domain protein (TIGR), at 1,542,188 to 1,542,865 cysG-1 DVU1464: DVU1464 - heptosyltransferase family protein (TIGR), at 1,542,988 to 1,544,223 DVU1464 DVU1465: DVU1465 - CgeB family protein (TIGR), at 1,544,267 to 1,545,595 DVU1465 Position (kb) 1542 1543 1544 1545Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1542.152 kb on + strandat 1542.894 kb on + strandat 1542.903 kb on - strandat 1542.957 kb on + strandat 1542.973 kb on + strandat 1542.981 kb on - strandat 1543.052 kb on + strandat 1543.052 kb on + strandat 1543.052 kb on + strandat 1543.163 kb on + strand, within DVU1464at 1543.163 kb on + strand, within DVU1464at 1543.163 kb on + strand, within DVU1464at 1543.301 kb on - strand, within DVU1464at 1543.324 kb on - strand, within DVU1464at 1543.389 kb on - strand, within DVU1464at 1543.416 kb on + strand, within DVU1464at 1543.424 kb on - strand, within DVU1464at 1543.582 kb on + strand, within DVU1464at 1543.614 kb on + strand, within DVU1464at 1543.664 kb on - strand, within DVU1464at 1543.703 kb on + strand, within DVU1464at 1543.703 kb on + strand, within DVU1464at 1543.782 kb on + strand, within DVU1464at 1543.794 kb on + strand, within DVU1464at 1543.803 kb on - strand, within DVU1464at 1543.859 kb on + strand, within DVU1464at 1543.892 kb on + strand, within DVU1464at 1543.892 kb on + strand, within DVU1464at 1543.900 kb on - strand, within DVU1464at 1543.900 kb on - strand, within DVU1464at 1543.900 kb on - strand, within DVU1464at 1543.928 kb on + strand, within DVU1464at 1543.951 kb on + strand, within DVU1464at 1544.038 kb on - strand, within DVU1464at 1544.045 kb on + strand, within DVU1464at 1544.053 kb on - strand, within DVU1464at 1544.075 kb on - strand, within DVU1464at 1544.084 kb on + strand, within DVU1464at 1544.094 kb on + strand, within DVU1464at 1544.145 kb on - strandat 1544.189 kb on - strandat 1544.189 kb on - strandat 1544.225 kb on - strandat 1544.227 kb on + strandat 1544.269 kb on - strandat 1544.296 kb on + strandat 1544.319 kb on + strandat 1544.325 kb on + strandat 1544.412 kb on + strand, within DVU1465at 1544.432 kb on - strand, within DVU1465at 1544.434 kb on - strand, within DVU1465at 1544.479 kb on - strand, within DVU1465at 1544.494 kb on + strand, within DVU1465at 1544.507 kb on - strand, within DVU1465at 1544.509 kb on - strand, within DVU1465at 1544.557 kb on + strand, within DVU1465at 1544.557 kb on + strand, within DVU1465at 1544.565 kb on + strand, within DVU1465at 1544.613 kb on + strand, within DVU1465at 1544.654 kb on + strand, within DVU1465at 1544.682 kb on - strand, within DVU1465at 1544.944 kb on + strand, within DVU1465at 1544.952 kb on - strand, within DVU1465at 1544.952 kb on - strand, within DVU1465at 1544.958 kb on + strand, within DVU1465at 1544.990 kb on - strand, within DVU1465at 1544.992 kb on + strand, within DVU1465at 1545.012 kb on + strand, within DVU1465at 1545.020 kb on - strand, within DVU1465at 1545.020 kb on - strand, within DVU1465at 1545.020 kb on - strand, within DVU1465at 1545.064 kb on + strand, within DVU1465at 1545.088 kb on - strand, within DVU1465at 1545.123 kb on + strand, within DVU1465at 1545.123 kb on + strand, within DVU1465at 1545.131 kb on - strand, within DVU1465at 1545.185 kb on - strand, within DVU1465

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfate (60-15mM) with Tungstate 2mM
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1,542,152 + -3.8
1,542,894 + -0.8
1,542,903 - -1.4
1,542,957 + -0.4
1,542,973 + -1.0
1,542,981 - -0.1
1,543,052 + -2.0
1,543,052 + -0.3
1,543,052 + -0.1
1,543,163 + DVU1464 0.14 -0.7
1,543,163 + DVU1464 0.14 -0.2
1,543,163 + DVU1464 0.14 -0.2
1,543,301 - DVU1464 0.25 +0.6
1,543,324 - DVU1464 0.27 -1.6
1,543,389 - DVU1464 0.32 -0.4
1,543,416 + DVU1464 0.35 +0.7
1,543,424 - DVU1464 0.35 -0.5
1,543,582 + DVU1464 0.48 +0.1
1,543,614 + DVU1464 0.51 -0.3
1,543,664 - DVU1464 0.55 -0.1
1,543,703 + DVU1464 0.58 +1.0
1,543,703 + DVU1464 0.58 +0.0
1,543,782 + DVU1464 0.64 +0.0
1,543,794 + DVU1464 0.65 +0.3
1,543,803 - DVU1464 0.66 -0.5
1,543,859 + DVU1464 0.70 -1.6
1,543,892 + DVU1464 0.73 -0.5
1,543,892 + DVU1464 0.73 -3.0
1,543,900 - DVU1464 0.74 +0.0
1,543,900 - DVU1464 0.74 -0.6
1,543,900 - DVU1464 0.74 +0.2
1,543,928 + DVU1464 0.76 -0.6
1,543,951 + DVU1464 0.78 -2.1
1,544,038 - DVU1464 0.85 -0.7
1,544,045 + DVU1464 0.86 -1.4
1,544,053 - DVU1464 0.86 -0.4
1,544,075 - DVU1464 0.88 -0.7
1,544,084 + DVU1464 0.89 +0.1
1,544,094 + DVU1464 0.89 -1.4
1,544,145 - +1.1
1,544,189 - +0.0
1,544,189 - +1.0
1,544,225 - -1.0
1,544,227 + -0.3
1,544,269 - +0.1
1,544,296 + +0.2
1,544,319 + -0.3
1,544,325 + -1.7
1,544,412 + DVU1465 0.11 -0.7
1,544,432 - DVU1465 0.12 -1.4
1,544,434 - DVU1465 0.13 -0.5
1,544,479 - DVU1465 0.16 -0.2
1,544,494 + DVU1465 0.17 -0.8
1,544,507 - DVU1465 0.18 -1.0
1,544,509 - DVU1465 0.18 -1.1
1,544,557 + DVU1465 0.22 -1.1
1,544,557 + DVU1465 0.22 -1.9
1,544,565 + DVU1465 0.22 +1.6
1,544,613 + DVU1465 0.26 -1.7
1,544,654 + DVU1465 0.29 -1.3
1,544,682 - DVU1465 0.31 +0.6
1,544,944 + DVU1465 0.51 +0.8
1,544,952 - DVU1465 0.52 -0.8
1,544,952 - DVU1465 0.52 -0.6
1,544,958 + DVU1465 0.52 -0.5
1,544,990 - DVU1465 0.54 -1.7
1,544,992 + DVU1465 0.55 -1.1
1,545,012 + DVU1465 0.56 -1.2
1,545,020 - DVU1465 0.57 -1.1
1,545,020 - DVU1465 0.57 -0.3
1,545,020 - DVU1465 0.57 +0.9
1,545,064 + DVU1465 0.60 -1.4
1,545,088 - DVU1465 0.62 -1.2
1,545,123 + DVU1465 0.64 +0.8
1,545,123 + DVU1465 0.64 -1.3
1,545,131 - DVU1465 0.65 -1.0
1,545,185 - DVU1465 0.69 -1.3

Or see this region's nucleotide sequence