Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4676

Experiment: KB with Prenyletin 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4675 and Psyr_4676 are separated by 55 nucleotidesPsyr_4676 and Psyr_4677 are separated by 403 nucleotides Psyr_4675: Psyr_4675 - Peptidase S9, prolyl oligopeptidase active site region, at 5,540,498 to 5,542,324 _4675 Psyr_4676: Psyr_4676 - Protein of unknown function UPF0057, at 5,542,380 to 5,542,541 _4676 Psyr_4677: Psyr_4677 - Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region, at 5,542,945 to 5,544,723 _4677 Position (kb) 5542 5543Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 5541.446 kb on + strand, within Psyr_4675at 5541.447 kb on - strand, within Psyr_4675at 5541.447 kb on - strand, within Psyr_4675at 5541.611 kb on + strand, within Psyr_4675at 5541.611 kb on + strand, within Psyr_4675at 5541.611 kb on + strand, within Psyr_4675at 5541.611 kb on + strand, within Psyr_4675at 5541.612 kb on - strand, within Psyr_4675at 5541.612 kb on - strand, within Psyr_4675at 5541.612 kb on - strand, within Psyr_4675at 5541.612 kb on - strand, within Psyr_4675at 5541.612 kb on - strand, within Psyr_4675at 5541.618 kb on - strand, within Psyr_4675at 5541.717 kb on - strand, within Psyr_4675at 5541.917 kb on + strand, within Psyr_4675at 5541.951 kb on + strand, within Psyr_4675at 5541.951 kb on + strand, within Psyr_4675at 5541.952 kb on - strand, within Psyr_4675at 5542.015 kb on + strand, within Psyr_4675at 5542.031 kb on + strand, within Psyr_4675at 5542.031 kb on + strand, within Psyr_4675at 5542.088 kb on - strand, within Psyr_4675at 5542.229 kb on + strandat 5542.229 kb on + strandat 5542.229 kb on + strandat 5542.230 kb on - strandat 5542.230 kb on - strandat 5542.230 kb on - strandat 5542.230 kb on - strandat 5542.381 kb on + strandat 5542.381 kb on + strandat 5542.381 kb on + strandat 5542.381 kb on + strandat 5542.381 kb on + strandat 5542.381 kb on + strandat 5542.402 kb on + strand, within Psyr_4676at 5542.402 kb on + strand, within Psyr_4676at 5542.402 kb on + strand, within Psyr_4676at 5542.402 kb on + strand, within Psyr_4676at 5542.402 kb on + strand, within Psyr_4676at 5542.402 kb on + strand, within Psyr_4676at 5542.402 kb on + strand, within Psyr_4676at 5542.402 kb on + strand, within Psyr_4676at 5542.402 kb on + strand, within Psyr_4676at 5542.402 kb on + strand, within Psyr_4676at 5542.403 kb on - strand, within Psyr_4676at 5542.403 kb on - strand, within Psyr_4676at 5542.403 kb on - strand, within Psyr_4676at 5542.403 kb on - strand, within Psyr_4676at 5542.403 kb on - strand, within Psyr_4676at 5542.403 kb on - strand, within Psyr_4676at 5542.403 kb on - strand, within Psyr_4676at 5542.429 kb on + strand, within Psyr_4676at 5542.429 kb on + strand, within Psyr_4676at 5542.430 kb on - strand, within Psyr_4676at 5542.430 kb on - strand, within Psyr_4676at 5542.430 kb on - strand, within Psyr_4676at 5542.452 kb on - strand, within Psyr_4676at 5542.479 kb on + strand, within Psyr_4676at 5542.479 kb on + strand, within Psyr_4676at 5542.479 kb on + strand, within Psyr_4676at 5542.479 kb on + strand, within Psyr_4676at 5542.480 kb on - strand, within Psyr_4676at 5542.527 kb on - strandat 5542.576 kb on + strandat 5542.577 kb on - strandat 5542.577 kb on - strandat 5542.635 kb on - strandat 5542.811 kb on + strandat 5542.811 kb on + strandat 5542.812 kb on - strandat 5542.812 kb on - strandat 5542.812 kb on - strandat 5542.824 kb on + strandat 5542.824 kb on + strandat 5542.824 kb on + strandat 5542.824 kb on + strandat 5542.825 kb on - strandat 5542.825 kb on - strandat 5542.825 kb on - strandat 5542.848 kb on + strandat 5542.867 kb on + strandat 5542.911 kb on + strandat 5542.911 kb on + strandat 5542.911 kb on + strandat 5542.912 kb on - strandat 5542.970 kb on + strandat 5542.970 kb on + strandat 5542.970 kb on + strandat 5542.970 kb on + strandat 5542.970 kb on + strandat 5542.970 kb on + strandat 5542.971 kb on - strandat 5543.039 kb on + strandat 5543.039 kb on + strandat 5543.039 kb on + strandat 5543.040 kb on - strandat 5543.040 kb on - strandat 5543.040 kb on - strandat 5543.040 kb on - strandat 5543.040 kb on - strandat 5543.069 kb on + strandat 5543.069 kb on + strandat 5543.126 kb on + strand, within Psyr_4677at 5543.126 kb on + strand, within Psyr_4677at 5543.126 kb on + strand, within Psyr_4677at 5543.126 kb on + strand, within Psyr_4677at 5543.126 kb on + strand, within Psyr_4677at 5543.126 kb on + strand, within Psyr_4677at 5543.126 kb on + strand, within Psyr_4677at 5543.126 kb on + strand, within Psyr_4677at 5543.126 kb on + strand, within Psyr_4677at 5543.126 kb on + strand, within Psyr_4677at 5543.126 kb on + strand, within Psyr_4677at 5543.126 kb on + strand, within Psyr_4677at 5543.126 kb on + strand, within Psyr_4677at 5543.127 kb on - strand, within Psyr_4677at 5543.127 kb on - strand, within Psyr_4677at 5543.127 kb on - strand, within Psyr_4677at 5543.127 kb on - strand, within Psyr_4677at 5543.127 kb on - strand, within Psyr_4677at 5543.127 kb on - strand, within Psyr_4677at 5543.127 kb on - strand, within Psyr_4677at 5543.127 kb on - strand, within Psyr_4677at 5543.127 kb on - strand, within Psyr_4677at 5543.127 kb on - strand, within Psyr_4677at 5543.132 kb on + strand, within Psyr_4677at 5543.133 kb on - strand, within Psyr_4677at 5543.160 kb on - strand, within Psyr_4677at 5543.160 kb on - strand, within Psyr_4677at 5543.160 kb on - strand, within Psyr_4677at 5543.160 kb on - strand, within Psyr_4677at 5543.160 kb on - strand, within Psyr_4677at 5543.330 kb on + strand, within Psyr_4677at 5543.330 kb on + strand, within Psyr_4677at 5543.331 kb on - strand, within Psyr_4677at 5543.331 kb on - strand, within Psyr_4677at 5543.331 kb on - strand, within Psyr_4677at 5543.331 kb on - strand, within Psyr_4677at 5543.331 kb on - strand, within Psyr_4677at 5543.331 kb on - strand, within Psyr_4677at 5543.402 kb on + strand, within Psyr_4677at 5543.402 kb on + strand, within Psyr_4677at 5543.402 kb on + strand, within Psyr_4677at 5543.402 kb on + strand, within Psyr_4677at 5543.402 kb on + strand, within Psyr_4677at 5543.403 kb on - strand, within Psyr_4677at 5543.403 kb on - strand, within Psyr_4677at 5543.416 kb on - strand, within Psyr_4677at 5543.416 kb on - strand, within Psyr_4677at 5543.459 kb on + strand, within Psyr_4677at 5543.459 kb on + strand, within Psyr_4677at 5543.459 kb on + strand, within Psyr_4677at 5543.459 kb on + strand, within Psyr_4677at 5543.460 kb on - strand, within Psyr_4677at 5543.460 kb on - strand, within Psyr_4677at 5543.460 kb on - strand, within Psyr_4677

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Prenyletin 10 mM
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5,541,446 + Psyr_4675 0.52 +1.3
5,541,447 - Psyr_4675 0.52 +1.5
5,541,447 - Psyr_4675 0.52 +0.2
5,541,611 + Psyr_4675 0.61 +0.4
5,541,611 + Psyr_4675 0.61 +0.2
5,541,611 + Psyr_4675 0.61 +0.3
5,541,611 + Psyr_4675 0.61 +2.3
5,541,612 - Psyr_4675 0.61 +1.3
5,541,612 - Psyr_4675 0.61 +0.9
5,541,612 - Psyr_4675 0.61 -0.8
5,541,612 - Psyr_4675 0.61 +0.0
5,541,612 - Psyr_4675 0.61 -0.3
5,541,618 - Psyr_4675 0.61 +0.3
5,541,717 - Psyr_4675 0.67 +0.4
5,541,917 + Psyr_4675 0.78 -0.7
5,541,951 + Psyr_4675 0.80 -1.2
5,541,951 + Psyr_4675 0.80 +1.0
5,541,952 - Psyr_4675 0.80 +1.3
5,542,015 + Psyr_4675 0.83 -1.9
5,542,031 + Psyr_4675 0.84 -0.5
5,542,031 + Psyr_4675 0.84 +0.4
5,542,088 - Psyr_4675 0.87 +0.0
5,542,229 + +0.3
5,542,229 + +0.9
5,542,229 + -0.8
5,542,230 - -1.4
5,542,230 - +1.3
5,542,230 - -1.4
5,542,230 - +1.5
5,542,381 + -1.2
5,542,381 + -1.3
5,542,381 + -2.2
5,542,381 + -1.8
5,542,381 + +0.1
5,542,381 + +0.9
5,542,402 + Psyr_4676 0.14 -0.1
5,542,402 + Psyr_4676 0.14 -2.5
5,542,402 + Psyr_4676 0.14 +1.2
5,542,402 + Psyr_4676 0.14 +1.0
5,542,402 + Psyr_4676 0.14 -1.1
5,542,402 + Psyr_4676 0.14 +0.6
5,542,402 + Psyr_4676 0.14 +2.7
5,542,402 + Psyr_4676 0.14 -0.2
5,542,402 + Psyr_4676 0.14 +0.7
5,542,402 + Psyr_4676 0.14 +0.3
5,542,403 - Psyr_4676 0.14 -0.7
5,542,403 - Psyr_4676 0.14 +0.2
5,542,403 - Psyr_4676 0.14 -0.6
5,542,403 - Psyr_4676 0.14 -1.1
5,542,403 - Psyr_4676 0.14 +2.5
5,542,403 - Psyr_4676 0.14 -2.2
5,542,403 - Psyr_4676 0.14 +0.7
5,542,429 + Psyr_4676 0.30 -0.8
5,542,429 + Psyr_4676 0.30 -1.3
5,542,430 - Psyr_4676 0.31 -0.3
5,542,430 - Psyr_4676 0.31 -1.3
5,542,430 - Psyr_4676 0.31 -0.3
5,542,452 - Psyr_4676 0.44 +0.4
5,542,479 + Psyr_4676 0.61 -0.9
5,542,479 + Psyr_4676 0.61 -2.1
5,542,479 + Psyr_4676 0.61 -0.4
5,542,479 + Psyr_4676 0.61 -0.8
5,542,480 - Psyr_4676 0.62 +0.6
5,542,527 - -0.3
5,542,576 + -1.8
5,542,577 - +0.4
5,542,577 - +0.5
5,542,635 - +2.2
5,542,811 + -0.1
5,542,811 + +1.2
5,542,812 - -0.1
5,542,812 - +0.0
5,542,812 - +1.7
5,542,824 + +0.1
5,542,824 + -0.8
5,542,824 + +0.1
5,542,824 + +1.6
5,542,825 - -0.5
5,542,825 - +2.2
5,542,825 - -0.5
5,542,848 + +0.6
5,542,867 + -3.8
5,542,911 + +0.8
5,542,911 + +3.2
5,542,911 + -0.3
5,542,912 - -0.4
5,542,970 + +1.3
5,542,970 + +0.4
5,542,970 + -1.3
5,542,970 + -0.0
5,542,970 + +1.2
5,542,970 + +0.5
5,542,971 - +1.3
5,543,039 + -0.2
5,543,039 + +0.9
5,543,039 + +0.5
5,543,040 - +0.3
5,543,040 - -0.4
5,543,040 - +5.2
5,543,040 - +0.2
5,543,040 - -1.1
5,543,069 + -0.0
5,543,069 + -0.8
5,543,126 + Psyr_4677 0.10 +0.1
5,543,126 + Psyr_4677 0.10 +0.5
5,543,126 + Psyr_4677 0.10 -1.8
5,543,126 + Psyr_4677 0.10 +0.3
5,543,126 + Psyr_4677 0.10 -0.8
5,543,126 + Psyr_4677 0.10 -0.3
5,543,126 + Psyr_4677 0.10 -1.1
5,543,126 + Psyr_4677 0.10 +0.7
5,543,126 + Psyr_4677 0.10 -0.3
5,543,126 + Psyr_4677 0.10 +1.2
5,543,126 + Psyr_4677 0.10 -1.6
5,543,126 + Psyr_4677 0.10 -0.7
5,543,126 + Psyr_4677 0.10 -0.4
5,543,127 - Psyr_4677 0.10 -1.7
5,543,127 - Psyr_4677 0.10 +1.3
5,543,127 - Psyr_4677 0.10 +0.9
5,543,127 - Psyr_4677 0.10 -1.1
5,543,127 - Psyr_4677 0.10 -1.6
5,543,127 - Psyr_4677 0.10 +1.1
5,543,127 - Psyr_4677 0.10 +0.8
5,543,127 - Psyr_4677 0.10 -0.8
5,543,127 - Psyr_4677 0.10 -1.5
5,543,127 - Psyr_4677 0.10 -0.4
5,543,132 + Psyr_4677 0.11 +0.3
5,543,133 - Psyr_4677 0.11 -0.4
5,543,160 - Psyr_4677 0.12 -0.1
5,543,160 - Psyr_4677 0.12 -1.1
5,543,160 - Psyr_4677 0.12 +1.9
5,543,160 - Psyr_4677 0.12 -0.6
5,543,160 - Psyr_4677 0.12 +0.2
5,543,330 + Psyr_4677 0.22 -0.3
5,543,330 + Psyr_4677 0.22 +0.3
5,543,331 - Psyr_4677 0.22 -0.0
5,543,331 - Psyr_4677 0.22 -1.2
5,543,331 - Psyr_4677 0.22 -0.5
5,543,331 - Psyr_4677 0.22 -2.1
5,543,331 - Psyr_4677 0.22 +0.1
5,543,331 - Psyr_4677 0.22 +0.1
5,543,402 + Psyr_4677 0.26 +0.7
5,543,402 + Psyr_4677 0.26 -0.7
5,543,402 + Psyr_4677 0.26 +0.0
5,543,402 + Psyr_4677 0.26 -0.2
5,543,402 + Psyr_4677 0.26 -0.7
5,543,403 - Psyr_4677 0.26 +0.7
5,543,403 - Psyr_4677 0.26 +0.2
5,543,416 - Psyr_4677 0.26 -1.8
5,543,416 - Psyr_4677 0.26 -0.2
5,543,459 + Psyr_4677 0.29 +1.6
5,543,459 + Psyr_4677 0.29 +0.1
5,543,459 + Psyr_4677 0.29 +0.7
5,543,459 + Psyr_4677 0.29 -0.8
5,543,460 - Psyr_4677 0.29 +0.1
5,543,460 - Psyr_4677 0.29 +0.3
5,543,460 - Psyr_4677 0.29 +0.3

Or see this region's nucleotide sequence