Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3857

Experiment: KB with Prenyletin 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3856 and Psyr_3857 are separated by 107 nucleotidesPsyr_3857 and Psyr_3858 are separated by 180 nucleotides Psyr_3856: Psyr_3856 - Helicase c2, at 4,595,497 to 4,597,641 _3856 Psyr_3857: Psyr_3857 - conserved hypothetical protein, at 4,597,749 to 4,598,213 _3857 Psyr_3858: Psyr_3858 - Nucleoside-specific channel-forming protein, Tsx, at 4,598,394 to 4,599,353 _3858 Position (kb) 4597 4598 4599Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4596.869 kb on + strand, within Psyr_3856at 4596.869 kb on + strand, within Psyr_3856at 4596.869 kb on + strand, within Psyr_3856at 4596.869 kb on + strand, within Psyr_3856at 4596.869 kb on + strand, within Psyr_3856at 4596.869 kb on + strand, within Psyr_3856at 4596.869 kb on + strand, within Psyr_3856at 4596.869 kb on + strand, within Psyr_3856at 4596.870 kb on - strand, within Psyr_3856at 4596.870 kb on - strand, within Psyr_3856at 4596.870 kb on - strand, within Psyr_3856at 4596.870 kb on - strand, within Psyr_3856at 4596.870 kb on - strand, within Psyr_3856at 4596.986 kb on + strand, within Psyr_3856at 4596.986 kb on + strand, within Psyr_3856at 4596.986 kb on + strand, within Psyr_3856at 4596.986 kb on + strand, within Psyr_3856at 4596.986 kb on + strand, within Psyr_3856at 4596.986 kb on + strand, within Psyr_3856at 4596.986 kb on + strand, within Psyr_3856at 4596.986 kb on + strand, within Psyr_3856at 4596.986 kb on + strand, within Psyr_3856at 4596.987 kb on - strand, within Psyr_3856at 4596.987 kb on - strand, within Psyr_3856at 4596.987 kb on - strand, within Psyr_3856at 4596.987 kb on - strand, within Psyr_3856at 4596.987 kb on - strand, within Psyr_3856at 4596.987 kb on - strand, within Psyr_3856at 4596.987 kb on - strand, within Psyr_3856at 4596.987 kb on - strand, within Psyr_3856at 4596.987 kb on - strand, within Psyr_3856at 4597.262 kb on + strand, within Psyr_3856at 4597.262 kb on + strand, within Psyr_3856at 4597.262 kb on + strand, within Psyr_3856at 4597.263 kb on - strand, within Psyr_3856at 4597.263 kb on - strand, within Psyr_3856at 4597.263 kb on - strand, within Psyr_3856at 4597.263 kb on - strand, within Psyr_3856at 4597.263 kb on - strand, within Psyr_3856at 4597.263 kb on - strand, within Psyr_3856at 4597.337 kb on + strand, within Psyr_3856at 4597.338 kb on - strand, within Psyr_3856at 4597.427 kb on + strandat 4597.720 kb on - strandat 4597.764 kb on - strandat 4597.770 kb on + strandat 4597.770 kb on + strandat 4597.770 kb on + strandat 4597.770 kb on + strandat 4597.770 kb on + strandat 4597.771 kb on - strandat 4597.771 kb on - strandat 4597.772 kb on + strandat 4597.772 kb on + strandat 4597.772 kb on + strandat 4597.772 kb on + strandat 4597.772 kb on + strandat 4597.772 kb on + strandat 4597.772 kb on + strandat 4597.772 kb on + strandat 4597.772 kb on + strandat 4597.773 kb on - strandat 4597.773 kb on - strandat 4597.773 kb on - strandat 4597.773 kb on - strandat 4597.773 kb on - strandat 4597.773 kb on - strandat 4597.773 kb on - strandat 4597.773 kb on - strandat 4597.773 kb on - strandat 4597.773 kb on - strandat 4597.773 kb on - strandat 4597.773 kb on - strandat 4597.773 kb on - strandat 4597.773 kb on - strandat 4597.773 kb on - strandat 4597.773 kb on - strandat 4597.773 kb on - strandat 4597.773 kb on - strandat 4597.773 kb on - strandat 4597.773 kb on - strandat 4597.773 kb on - strandat 4597.773 kb on - strandat 4598.001 kb on + strand, within Psyr_3857at 4598.001 kb on + strand, within Psyr_3857at 4598.001 kb on + strand, within Psyr_3857at 4598.002 kb on - strand, within Psyr_3857at 4598.025 kb on + strand, within Psyr_3857at 4598.026 kb on - strand, within Psyr_3857at 4598.026 kb on - strand, within Psyr_3857at 4598.216 kb on + strandat 4598.305 kb on - strandat 4598.564 kb on + strand, within Psyr_3858at 4598.565 kb on - strand, within Psyr_3858at 4598.565 kb on - strand, within Psyr_3858at 4598.575 kb on - strand, within Psyr_3858at 4598.658 kb on + strand, within Psyr_3858at 4598.658 kb on + strand, within Psyr_3858at 4598.658 kb on + strand, within Psyr_3858at 4598.658 kb on + strand, within Psyr_3858at 4598.659 kb on - strand, within Psyr_3858at 4598.659 kb on - strand, within Psyr_3858at 4598.659 kb on - strand, within Psyr_3858at 4598.668 kb on - strand, within Psyr_3858at 4598.673 kb on + strand, within Psyr_3858at 4598.673 kb on + strand, within Psyr_3858at 4598.673 kb on + strand, within Psyr_3858at 4598.673 kb on + strand, within Psyr_3858at 4598.673 kb on + strand, within Psyr_3858at 4598.673 kb on + strand, within Psyr_3858at 4598.674 kb on - strand, within Psyr_3858at 4598.674 kb on - strand, within Psyr_3858at 4598.704 kb on - strand, within Psyr_3858at 4598.704 kb on - strand, within Psyr_3858at 4598.704 kb on - strand, within Psyr_3858at 4598.704 kb on - strand, within Psyr_3858at 4598.709 kb on + strand, within Psyr_3858at 4598.710 kb on - strand, within Psyr_3858at 4598.710 kb on - strand, within Psyr_3858at 4598.710 kb on - strand, within Psyr_3858at 4598.817 kb on + strand, within Psyr_3858at 4598.862 kb on + strand, within Psyr_3858at 4598.862 kb on + strand, within Psyr_3858at 4598.862 kb on + strand, within Psyr_3858at 4598.862 kb on + strand, within Psyr_3858at 4598.863 kb on - strand, within Psyr_3858at 4598.883 kb on + strand, within Psyr_3858at 4598.883 kb on + strand, within Psyr_3858at 4598.883 kb on + strand, within Psyr_3858at 4598.883 kb on + strand, within Psyr_3858at 4598.883 kb on + strand, within Psyr_3858at 4598.883 kb on + strand, within Psyr_3858at 4598.883 kb on + strand, within Psyr_3858at 4598.883 kb on + strand, within Psyr_3858at 4598.883 kb on + strand, within Psyr_3858at 4598.883 kb on + strand, within Psyr_3858at 4598.884 kb on - strand, within Psyr_3858at 4598.884 kb on - strand, within Psyr_3858at 4598.884 kb on - strand, within Psyr_3858at 4598.925 kb on + strand, within Psyr_3858at 4598.985 kb on + strand, within Psyr_3858at 4598.994 kb on + strand, within Psyr_3858at 4599.009 kb on + strand, within Psyr_3858at 4599.010 kb on - strand, within Psyr_3858at 4599.027 kb on + strand, within Psyr_3858at 4599.027 kb on + strand, within Psyr_3858at 4599.060 kb on + strand, within Psyr_3858at 4599.060 kb on + strand, within Psyr_3858at 4599.060 kb on + strand, within Psyr_3858at 4599.060 kb on + strand, within Psyr_3858at 4599.060 kb on + strand, within Psyr_3858at 4599.060 kb on + strand, within Psyr_3858at 4599.061 kb on - strand, within Psyr_3858at 4599.061 kb on - strand, within Psyr_3858at 4599.061 kb on - strand, within Psyr_3858at 4599.061 kb on - strand, within Psyr_3858at 4599.061 kb on - strand, within Psyr_3858at 4599.105 kb on + strand, within Psyr_3858at 4599.105 kb on + strand, within Psyr_3858at 4599.105 kb on + strand, within Psyr_3858at 4599.106 kb on - strand, within Psyr_3858at 4599.106 kb on - strand, within Psyr_3858at 4599.106 kb on - strand, within Psyr_3858at 4599.198 kb on + strand, within Psyr_3858at 4599.198 kb on + strand, within Psyr_3858at 4599.198 kb on + strand, within Psyr_3858at 4599.199 kb on - strand, within Psyr_3858

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Prenyletin 10 mM
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4,596,869 + Psyr_3856 0.64 -1.1
4,596,869 + Psyr_3856 0.64 -1.8
4,596,869 + Psyr_3856 0.64 -1.1
4,596,869 + Psyr_3856 0.64 +1.0
4,596,869 + Psyr_3856 0.64 +0.3
4,596,869 + Psyr_3856 0.64 +1.3
4,596,869 + Psyr_3856 0.64 -3.2
4,596,869 + Psyr_3856 0.64 +1.5
4,596,870 - Psyr_3856 0.64 -0.5
4,596,870 - Psyr_3856 0.64 -1.4
4,596,870 - Psyr_3856 0.64 -1.4
4,596,870 - Psyr_3856 0.64 +0.8
4,596,870 - Psyr_3856 0.64 -0.3
4,596,986 + Psyr_3856 0.69 +0.5
4,596,986 + Psyr_3856 0.69 +1.6
4,596,986 + Psyr_3856 0.69 +0.8
4,596,986 + Psyr_3856 0.69 +0.1
4,596,986 + Psyr_3856 0.69 -1.2
4,596,986 + Psyr_3856 0.69 +0.4
4,596,986 + Psyr_3856 0.69 +0.4
4,596,986 + Psyr_3856 0.69 +3.5
4,596,986 + Psyr_3856 0.69 +2.1
4,596,987 - Psyr_3856 0.69 -0.6
4,596,987 - Psyr_3856 0.69 -0.4
4,596,987 - Psyr_3856 0.69 -0.8
4,596,987 - Psyr_3856 0.69 +0.2
4,596,987 - Psyr_3856 0.69 -0.1
4,596,987 - Psyr_3856 0.69 +1.0
4,596,987 - Psyr_3856 0.69 -0.8
4,596,987 - Psyr_3856 0.69 +4.2
4,596,987 - Psyr_3856 0.69 -1.3
4,597,262 + Psyr_3856 0.82 +1.3
4,597,262 + Psyr_3856 0.82 -0.3
4,597,262 + Psyr_3856 0.82 -0.0
4,597,263 - Psyr_3856 0.82 +0.8
4,597,263 - Psyr_3856 0.82 -3.0
4,597,263 - Psyr_3856 0.82 +2.5
4,597,263 - Psyr_3856 0.82 -0.2
4,597,263 - Psyr_3856 0.82 -0.3
4,597,263 - Psyr_3856 0.82 -0.3
4,597,337 + Psyr_3856 0.86 -0.0
4,597,338 - Psyr_3856 0.86 -1.5
4,597,427 + +1.0
4,597,720 - -0.3
4,597,764 - +0.7
4,597,770 + +0.4
4,597,770 + -0.8
4,597,770 + -0.7
4,597,770 + -0.0
4,597,770 + +1.6
4,597,771 - -1.1
4,597,771 - -0.2
4,597,772 + -1.0
4,597,772 + -2.5
4,597,772 + +0.5
4,597,772 + -1.0
4,597,772 + +0.2
4,597,772 + +0.5
4,597,772 + +0.4
4,597,772 + +2.1
4,597,772 + +1.4
4,597,773 - -0.2
4,597,773 - -2.3
4,597,773 - -2.3
4,597,773 - -0.5
4,597,773 - +1.7
4,597,773 - +0.8
4,597,773 - -0.6
4,597,773 - +0.9
4,597,773 - +0.4
4,597,773 - -0.5
4,597,773 - -0.1
4,597,773 - +1.3
4,597,773 - +0.5
4,597,773 - +0.3
4,597,773 - -1.2
4,597,773 - +1.3
4,597,773 - +0.5
4,597,773 - -0.9
4,597,773 - +0.4
4,597,773 - -1.7
4,597,773 - -3.6
4,597,773 - +0.1
4,598,001 + Psyr_3857 0.54 +0.4
4,598,001 + Psyr_3857 0.54 -0.5
4,598,001 + Psyr_3857 0.54 -0.7
4,598,002 - Psyr_3857 0.54 -0.6
4,598,025 + Psyr_3857 0.59 -0.5
4,598,026 - Psyr_3857 0.60 -1.8
4,598,026 - Psyr_3857 0.60 -1.7
4,598,216 + +2.2
4,598,305 - +2.0
4,598,564 + Psyr_3858 0.18 +0.1
4,598,565 - Psyr_3858 0.18 -0.8
4,598,565 - Psyr_3858 0.18 -0.9
4,598,575 - Psyr_3858 0.19 +0.9
4,598,658 + Psyr_3858 0.28 -0.4
4,598,658 + Psyr_3858 0.28 +0.2
4,598,658 + Psyr_3858 0.28 +2.7
4,598,658 + Psyr_3858 0.28 +0.1
4,598,659 - Psyr_3858 0.28 -1.5
4,598,659 - Psyr_3858 0.28 -1.2
4,598,659 - Psyr_3858 0.28 +0.1
4,598,668 - Psyr_3858 0.29 -0.6
4,598,673 + Psyr_3858 0.29 -0.6
4,598,673 + Psyr_3858 0.29 +1.2
4,598,673 + Psyr_3858 0.29 -0.3
4,598,673 + Psyr_3858 0.29 +0.4
4,598,673 + Psyr_3858 0.29 +2.0
4,598,673 + Psyr_3858 0.29 -0.2
4,598,674 - Psyr_3858 0.29 -0.6
4,598,674 - Psyr_3858 0.29 -0.2
4,598,704 - Psyr_3858 0.32 -0.9
4,598,704 - Psyr_3858 0.32 -0.1
4,598,704 - Psyr_3858 0.32 -1.4
4,598,704 - Psyr_3858 0.32 +0.7
4,598,709 + Psyr_3858 0.33 +1.6
4,598,710 - Psyr_3858 0.33 -0.4
4,598,710 - Psyr_3858 0.33 -0.2
4,598,710 - Psyr_3858 0.33 -0.4
4,598,817 + Psyr_3858 0.44 +1.6
4,598,862 + Psyr_3858 0.49 +0.8
4,598,862 + Psyr_3858 0.49 +0.3
4,598,862 + Psyr_3858 0.49 +0.7
4,598,862 + Psyr_3858 0.49 -0.2
4,598,863 - Psyr_3858 0.49 +1.5
4,598,883 + Psyr_3858 0.51 -0.6
4,598,883 + Psyr_3858 0.51 +0.8
4,598,883 + Psyr_3858 0.51 -0.2
4,598,883 + Psyr_3858 0.51 -0.3
4,598,883 + Psyr_3858 0.51 +0.2
4,598,883 + Psyr_3858 0.51 +1.7
4,598,883 + Psyr_3858 0.51 -0.6
4,598,883 + Psyr_3858 0.51 -0.9
4,598,883 + Psyr_3858 0.51 +0.1
4,598,883 + Psyr_3858 0.51 +0.8
4,598,884 - Psyr_3858 0.51 +0.5
4,598,884 - Psyr_3858 0.51 +1.3
4,598,884 - Psyr_3858 0.51 +0.3
4,598,925 + Psyr_3858 0.55 -3.0
4,598,985 + Psyr_3858 0.62 -1.3
4,598,994 + Psyr_3858 0.62 -1.3
4,599,009 + Psyr_3858 0.64 +1.0
4,599,010 - Psyr_3858 0.64 +2.3
4,599,027 + Psyr_3858 0.66 +2.6
4,599,027 + Psyr_3858 0.66 -1.1
4,599,060 + Psyr_3858 0.69 +1.0
4,599,060 + Psyr_3858 0.69 -0.6
4,599,060 + Psyr_3858 0.69 -1.1
4,599,060 + Psyr_3858 0.69 +0.6
4,599,060 + Psyr_3858 0.69 +1.1
4,599,060 + Psyr_3858 0.69 -0.3
4,599,061 - Psyr_3858 0.69 -0.1
4,599,061 - Psyr_3858 0.69 +1.0
4,599,061 - Psyr_3858 0.69 +2.3
4,599,061 - Psyr_3858 0.69 -0.1
4,599,061 - Psyr_3858 0.69 +0.2
4,599,105 + Psyr_3858 0.74 -0.4
4,599,105 + Psyr_3858 0.74 -1.0
4,599,105 + Psyr_3858 0.74 -1.5
4,599,106 - Psyr_3858 0.74 -2.3
4,599,106 - Psyr_3858 0.74 +0.2
4,599,106 - Psyr_3858 0.74 +0.8
4,599,198 + Psyr_3858 0.84 -0.4
4,599,198 + Psyr_3858 0.84 -0.8
4,599,198 + Psyr_3858 0.84 +0.4
4,599,199 - Psyr_3858 0.84 +0.1

Or see this region's nucleotide sequence