Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3618

Experiment: KB with Prenyletin 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3616 and Psyr_3617 are separated by 146 nucleotidesPsyr_3617 and Psyr_3618 are separated by 102 nucleotidesPsyr_3618 and Psyr_3619 are separated by 90 nucleotides Psyr_3616: Psyr_3616 - Heat shock protein, Metallo peptidase, MEROPS family M48B, at 4,300,383 to 4,301,270 _3616 Psyr_3617: Psyr_3617 - Thiopurine S-methyltransferase, at 4,301,417 to 4,302,079 _3617 Psyr_3618: Psyr_3618 - Catalytic LigB subunit of aromatic ring-opening dioxygenase, at 4,302,182 to 4,302,949 _3618 Psyr_3619: Psyr_3619 - Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase, N-terminal, at 4,303,040 to 4,304,713 _3619 Position (kb) 4302 4303Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4301.442 kb on + strandat 4301.442 kb on + strandat 4301.442 kb on + strandat 4301.442 kb on + strandat 4301.442 kb on + strandat 4301.442 kb on + strandat 4301.443 kb on - strandat 4301.443 kb on - strandat 4301.443 kb on - strandat 4301.443 kb on - strandat 4301.443 kb on - strandat 4301.443 kb on - strandat 4301.443 kb on - strandat 4301.458 kb on + strandat 4301.458 kb on + strandat 4301.459 kb on - strandat 4301.459 kb on - strandat 4301.517 kb on - strand, within Psyr_3617at 4301.666 kb on + strand, within Psyr_3617at 4301.667 kb on - strand, within Psyr_3617at 4301.667 kb on - strand, within Psyr_3617at 4301.667 kb on - strand, within Psyr_3617at 4301.667 kb on - strand, within Psyr_3617at 4301.667 kb on - strand, within Psyr_3617at 4301.670 kb on + strand, within Psyr_3617at 4301.670 kb on + strand, within Psyr_3617at 4301.670 kb on + strand, within Psyr_3617at 4301.670 kb on + strand, within Psyr_3617at 4301.670 kb on + strand, within Psyr_3617at 4301.670 kb on + strand, within Psyr_3617at 4301.671 kb on - strand, within Psyr_3617at 4301.671 kb on - strand, within Psyr_3617at 4301.671 kb on - strand, within Psyr_3617at 4301.799 kb on + strand, within Psyr_3617at 4301.799 kb on + strand, within Psyr_3617at 4301.824 kb on + strand, within Psyr_3617at 4301.824 kb on + strand, within Psyr_3617at 4301.825 kb on - strand, within Psyr_3617at 4301.856 kb on + strand, within Psyr_3617at 4301.857 kb on - strand, within Psyr_3617at 4301.857 kb on - strand, within Psyr_3617at 4301.901 kb on + strand, within Psyr_3617at 4301.945 kb on + strand, within Psyr_3617at 4301.994 kb on + strand, within Psyr_3617at 4301.994 kb on + strand, within Psyr_3617at 4302.131 kb on - strandat 4302.151 kb on + strandat 4302.167 kb on - strandat 4302.179 kb on + strandat 4302.179 kb on + strandat 4302.179 kb on + strandat 4302.180 kb on - strandat 4302.180 kb on - strandat 4302.447 kb on + strand, within Psyr_3618at 4302.537 kb on - strand, within Psyr_3618at 4302.645 kb on + strand, within Psyr_3618at 4302.646 kb on - strand, within Psyr_3618at 4302.677 kb on - strand, within Psyr_3618at 4302.931 kb on + strandat 4302.935 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Prenyletin 10 mM
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4,301,442 + -1.1
4,301,442 + +0.5
4,301,442 + -0.1
4,301,442 + -1.0
4,301,442 + +0.8
4,301,442 + -0.9
4,301,443 - +0.4
4,301,443 - +0.3
4,301,443 - +1.1
4,301,443 - -3.6
4,301,443 - +0.9
4,301,443 - +2.2
4,301,443 - -0.2
4,301,458 + +2.7
4,301,458 + +2.1
4,301,459 - -1.2
4,301,459 - -0.2
4,301,517 - Psyr_3617 0.15 +0.9
4,301,666 + Psyr_3617 0.38 +0.9
4,301,667 - Psyr_3617 0.38 +1.9
4,301,667 - Psyr_3617 0.38 -0.1
4,301,667 - Psyr_3617 0.38 -2.1
4,301,667 - Psyr_3617 0.38 +0.4
4,301,667 - Psyr_3617 0.38 -0.4
4,301,670 + Psyr_3617 0.38 -1.6
4,301,670 + Psyr_3617 0.38 -0.8
4,301,670 + Psyr_3617 0.38 -0.9
4,301,670 + Psyr_3617 0.38 +0.7
4,301,670 + Psyr_3617 0.38 +0.7
4,301,670 + Psyr_3617 0.38 -0.5
4,301,671 - Psyr_3617 0.38 +0.1
4,301,671 - Psyr_3617 0.38 -0.6
4,301,671 - Psyr_3617 0.38 +0.7
4,301,799 + Psyr_3617 0.58 -0.7
4,301,799 + Psyr_3617 0.58 +0.9
4,301,824 + Psyr_3617 0.61 -0.4
4,301,824 + Psyr_3617 0.61 +0.7
4,301,825 - Psyr_3617 0.62 +0.1
4,301,856 + Psyr_3617 0.66 +1.1
4,301,857 - Psyr_3617 0.66 +0.3
4,301,857 - Psyr_3617 0.66 -1.2
4,301,901 + Psyr_3617 0.73 -0.2
4,301,945 + Psyr_3617 0.80 -0.0
4,301,994 + Psyr_3617 0.87 +0.6
4,301,994 + Psyr_3617 0.87 +0.3
4,302,131 - -2.2
4,302,151 + +0.7
4,302,167 - -1.1
4,302,179 + -0.4
4,302,179 + +1.4
4,302,179 + +0.4
4,302,180 - +1.5
4,302,180 - -1.1
4,302,447 + Psyr_3618 0.35 -0.5
4,302,537 - Psyr_3618 0.46 -0.3
4,302,645 + Psyr_3618 0.60 -0.6
4,302,646 - Psyr_3618 0.60 -0.1
4,302,677 - Psyr_3618 0.64 -1.1
4,302,931 + -0.4
4,302,935 + +0.7

Or see this region's nucleotide sequence