Experiment: KB with Prenyletin 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3459 and Psyr_3460 overlap by 1 nucleotides Psyr_3460 and Psyr_3461 are separated by 122 nucleotides
Psyr_3459: Psyr_3459 - Helix-turn-helix, Fis-type, at 4,122,450 to 4,123,865
_3459
Psyr_3460: Psyr_3460 - PAS/PAC sensor signal transduction histidine kinase, at 4,123,865 to 4,125,079
_3460
Psyr_3461: Psyr_3461 - Helix-turn-helix, Fis-type, at 4,125,202 to 4,126,677
_3461
Position (kb) 4123
4124
4125
4126 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4122.902 kb on + strand, within Psyr_3459 at 4122.903 kb on - strand, within Psyr_3459 at 4122.903 kb on - strand, within Psyr_3459 at 4122.903 kb on - strand, within Psyr_3459 at 4123.319 kb on + strand, within Psyr_3459 at 4123.778 kb on + strand at 4123.778 kb on + strand at 4123.779 kb on - strand at 4123.779 kb on - strand at 4123.779 kb on - strand at 4123.780 kb on + strand at 4123.780 kb on + strand at 4123.780 kb on + strand at 4123.780 kb on + strand at 4123.780 kb on + strand at 4123.781 kb on - strand at 4123.781 kb on - strand at 4123.781 kb on - strand at 4123.781 kb on - strand at 4123.781 kb on - strand at 4123.781 kb on - strand at 4123.781 kb on - strand at 4123.781 kb on - strand at 4123.781 kb on - strand at 4123.870 kb on + strand at 4123.870 kb on + strand at 4123.870 kb on + strand at 4123.870 kb on + strand at 4123.871 kb on - strand at 4123.871 kb on - strand at 4123.874 kb on - strand at 4123.874 kb on - strand at 4123.874 kb on - strand at 4123.947 kb on + strand at 4123.947 kb on + strand at 4123.947 kb on + strand at 4123.947 kb on + strand at 4123.948 kb on - strand at 4123.948 kb on - strand at 4123.948 kb on - strand at 4124.118 kb on + strand, within Psyr_3460 at 4124.119 kb on - strand, within Psyr_3460 at 4124.463 kb on + strand, within Psyr_3460 at 4124.463 kb on + strand, within Psyr_3460 at 4124.488 kb on + strand, within Psyr_3460 at 4124.518 kb on + strand, within Psyr_3460 at 4124.597 kb on + strand, within Psyr_3460 at 4124.598 kb on - strand, within Psyr_3460 at 4124.759 kb on - strand, within Psyr_3460 at 4125.047 kb on + strand at 4125.132 kb on + strand at 4125.133 kb on - strand at 4125.245 kb on + strand at 4125.245 kb on + strand at 4125.245 kb on + strand at 4125.246 kb on - strand at 4125.274 kb on - strand at 4125.282 kb on + strand at 4125.283 kb on - strand at 4125.368 kb on + strand, within Psyr_3461 at 4125.369 kb on - strand, within Psyr_3461 at 4125.369 kb on - strand, within Psyr_3461 at 4125.427 kb on - strand, within Psyr_3461 at 4125.427 kb on - strand, within Psyr_3461 at 4125.503 kb on + strand, within Psyr_3461 at 4125.503 kb on + strand, within Psyr_3461 at 4125.504 kb on - strand, within Psyr_3461 at 4125.767 kb on + strand, within Psyr_3461 at 4125.767 kb on + strand, within Psyr_3461 at 4125.767 kb on + strand, within Psyr_3461 at 4125.767 kb on + strand, within Psyr_3461 at 4125.767 kb on + strand, within Psyr_3461
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Prenyletin 10 mM remove 4,122,902 + Psyr_3459 0.32 -1.9 4,122,903 - Psyr_3459 0.32 -1.7 4,122,903 - Psyr_3459 0.32 +2.9 4,122,903 - Psyr_3459 0.32 -0.7 4,123,319 + Psyr_3459 0.61 -1.4 4,123,778 + -1.7 4,123,778 + +0.8 4,123,779 - +0.2 4,123,779 - -0.1 4,123,779 - -0.7 4,123,780 + -0.8 4,123,780 + +1.0 4,123,780 + +1.2 4,123,780 + -0.2 4,123,780 + -1.4 4,123,781 - -0.8 4,123,781 - +0.0 4,123,781 - +0.6 4,123,781 - +1.4 4,123,781 - +0.9 4,123,781 - +0.5 4,123,781 - +0.3 4,123,781 - -1.2 4,123,781 - -0.3 4,123,870 + -0.4 4,123,870 + +0.7 4,123,870 + +1.5 4,123,870 + +0.6 4,123,871 - +1.8 4,123,871 - +0.2 4,123,874 - -0.7 4,123,874 - -2.0 4,123,874 - -0.5 4,123,947 + +0.6 4,123,947 + -0.0 4,123,947 + -0.5 4,123,947 + -2.0 4,123,948 - +0.1 4,123,948 - -0.6 4,123,948 - -0.9 4,124,118 + Psyr_3460 0.21 -0.3 4,124,119 - Psyr_3460 0.21 +1.1 4,124,463 + Psyr_3460 0.49 +2.9 4,124,463 + Psyr_3460 0.49 +0.7 4,124,488 + Psyr_3460 0.51 +2.5 4,124,518 + Psyr_3460 0.54 -0.3 4,124,597 + Psyr_3460 0.60 +0.7 4,124,598 - Psyr_3460 0.60 +3.5 4,124,759 - Psyr_3460 0.74 -0.1 4,125,047 + -0.5 4,125,132 + +0.0 4,125,133 - +0.1 4,125,245 + -0.4 4,125,245 + +0.9 4,125,245 + +0.4 4,125,246 - +0.6 4,125,274 - +0.9 4,125,282 + +1.0 4,125,283 - +0.5 4,125,368 + Psyr_3461 0.11 -1.5 4,125,369 - Psyr_3461 0.11 +1.0 4,125,369 - Psyr_3461 0.11 -0.1 4,125,427 - Psyr_3461 0.15 +0.3 4,125,427 - Psyr_3461 0.15 +0.4 4,125,503 + Psyr_3461 0.20 -1.4 4,125,503 + Psyr_3461 0.20 +0.3 4,125,504 - Psyr_3461 0.20 +1.9 4,125,767 + Psyr_3461 0.38 -1.4 4,125,767 + Psyr_3461 0.38 +1.3 4,125,767 + Psyr_3461 0.38 -0.6 4,125,767 + Psyr_3461 0.38 -1.4 4,125,767 + Psyr_3461 0.38 +2.0
Or see this region's nucleotide sequence