Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1235

Experiment: KB with Prenyletin 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1233 and Psyr_1234 are separated by 215 nucleotidesPsyr_1234 and Psyr_1235 overlap by 1 nucleotidesPsyr_1235 and Psyr_1236 are separated by 159 nucleotidesPsyr_1236 and Psyr_1237 are separated by 44 nucleotides Psyr_1233: Psyr_1233 - Inositol monophosphatase, at 1,391,505 to 1,392,320 _1233 Psyr_1234: Psyr_1234 - RNA methyltransferase TrmH, group 1, at 1,392,536 to 1,393,300 _1234 Psyr_1235: Psyr_1235 - serine O-acetyltransferase, at 1,393,300 to 1,394,076 _1235 Psyr_1236: Psyr_1236 - transcriptional regulator, BadM/Rrf2 family, at 1,394,236 to 1,394,727 _1236 Psyr_1237: Psyr_1237 - cysteine desulfurase IscS, at 1,394,772 to 1,395,986 _1237 Position (kb) 1393 1394 1395Strain fitness (log2 ratio) -2 -1 0 1 2at 1392.473 kb on + strandat 1392.473 kb on + strandat 1392.985 kb on - strand, within Psyr_1234at 1392.998 kb on + strand, within Psyr_1234at 1392.998 kb on + strand, within Psyr_1234at 1392.999 kb on - strand, within Psyr_1234at 1392.999 kb on - strand, within Psyr_1234at 1392.999 kb on - strand, within Psyr_1234at 1392.999 kb on - strand, within Psyr_1234at 1393.106 kb on + strand, within Psyr_1234at 1393.107 kb on - strand, within Psyr_1234at 1393.107 kb on - strand, within Psyr_1234at 1393.193 kb on + strand, within Psyr_1234at 1393.194 kb on - strand, within Psyr_1234at 1393.280 kb on + strandat 1393.280 kb on + strandat 1393.281 kb on - strandat 1393.281 kb on - strandat 1393.281 kb on - strandat 1393.281 kb on - strandat 1393.694 kb on + strand, within Psyr_1235at 1393.694 kb on + strand, within Psyr_1235at 1393.694 kb on + strand, within Psyr_1235at 1393.695 kb on - strand, within Psyr_1235at 1393.695 kb on - strand, within Psyr_1235at 1393.695 kb on - strand, within Psyr_1235at 1393.887 kb on + strand, within Psyr_1235at 1394.105 kb on + strandat 1394.105 kb on + strandat 1394.106 kb on - strandat 1394.121 kb on + strandat 1394.122 kb on - strandat 1394.200 kb on + strandat 1394.200 kb on + strandat 1394.200 kb on + strandat 1394.247 kb on + strandat 1394.247 kb on + strandat 1394.343 kb on + strand, within Psyr_1236at 1394.343 kb on + strand, within Psyr_1236at 1394.356 kb on + strand, within Psyr_1236at 1394.639 kb on + strand, within Psyr_1236at 1394.700 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Prenyletin 10 mM
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1,392,473 + +0.3
1,392,473 + -1.2
1,392,985 - Psyr_1234 0.59 -0.2
1,392,998 + Psyr_1234 0.60 -1.6
1,392,998 + Psyr_1234 0.60 +1.8
1,392,999 - Psyr_1234 0.61 -0.4
1,392,999 - Psyr_1234 0.61 -0.3
1,392,999 - Psyr_1234 0.61 -2.0
1,392,999 - Psyr_1234 0.61 +2.0
1,393,106 + Psyr_1234 0.75 +1.3
1,393,107 - Psyr_1234 0.75 +0.0
1,393,107 - Psyr_1234 0.75 -1.2
1,393,193 + Psyr_1234 0.86 -0.9
1,393,194 - Psyr_1234 0.86 +1.8
1,393,280 + +0.6
1,393,280 + +0.2
1,393,281 - -0.4
1,393,281 - -0.1
1,393,281 - -0.3
1,393,281 - +0.8
1,393,694 + Psyr_1235 0.51 -2.4
1,393,694 + Psyr_1235 0.51 +0.1
1,393,694 + Psyr_1235 0.51 -0.4
1,393,695 - Psyr_1235 0.51 +0.5
1,393,695 - Psyr_1235 0.51 -0.4
1,393,695 - Psyr_1235 0.51 -0.6
1,393,887 + Psyr_1235 0.76 -0.5
1,394,105 + -1.3
1,394,105 + -0.1
1,394,106 - -0.4
1,394,121 + +0.3
1,394,122 - -0.1
1,394,200 + +1.4
1,394,200 + +0.6
1,394,200 + +0.3
1,394,247 + -0.9
1,394,247 + -1.4
1,394,343 + Psyr_1236 0.22 -0.0
1,394,343 + Psyr_1236 0.22 -1.4
1,394,356 + Psyr_1236 0.24 -1.5
1,394,639 + Psyr_1236 0.82 -1.0
1,394,700 + -0.3

Or see this region's nucleotide sequence