Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS30745

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs
2,786,704	+				+0.5
2,786,705	-				-2.7
2,786,705	-				-1.1
2,786,719	+				-1.3
2,786,719	+				+1.1
2,786,720	-				+0.8
2,786,791	-				-2.1
2,786,791	-				+1.7
2,786,795	-				-2.0
2,786,795	-				+2.4
2,786,795	-				+0.8
2,786,795	-				+0.2
2,786,795	-				+0.0
2,786,795	-				+2.3
2,786,795	-				+1.9
2,786,795	-				-0.7
2,786,795	-				-1.5
2,786,795	-				-2.7
2,786,865	+				-0.7
2,786,865	+				+0.7
2,786,865	+				+1.3
2,786,865	+				-3.4
2,786,865	+				+0.9
2,786,865	+				-0.3
2,786,993	-				+0.4
2,787,412	+				-3.4
2,787,412	+				+1.5
2,787,412	+				-1.9
2,787,412	+				-2.3
2,787,412	+				-2.9
2,787,412	+				-1.7
2,787,416	+				+0.7
2,787,416	+				+2.0
2,787,416	+				-1.8
2,787,416	+				+0.6
2,787,416	+				-1.6
2,787,416	+				+0.5
2,787,416	+				+1.2
2,787,416	+				+0.1
2,787,416	+				-2.2
2,787,416	+				-0.8
2,787,416	+				+1.4
2,787,416	+				+0.8
2,787,416	+				+0.2
2,787,416	+				+0.8
2,787,420	+				+1.6
2,787,420	+				-2.2
2,787,420	+				-1.0
2,787,420	+				+0.8
2,787,420	+				-1.4
2,787,420	+				-2.4
2,787,420	+				-2.1
2,787,420	+				-1.6
2,787,420	+				+1.4
2,787,420	+				+0.4
2,787,420	+				+3.6
2,787,420	+				+1.1
2,787,613	+				+1.3
2,787,661	-				+0.2
2,787,923	+		PFLU_RS30745	0.85	-3.0
2,787,923	+		PFLU_RS30745	0.85	-2.2
2,787,923	+		PFLU_RS30745	0.85	-1.7
2,787,923	+		PFLU_RS30745	0.85	-1.6
2,787,923	+		PFLU_RS30745	0.85	+0.8
2,787,923	+		PFLU_RS30745	0.85	+1.1
2,787,927	+		PFLU_RS30745	0.86	-0.1
2,787,927	+		PFLU_RS30745	0.86	-0.7
2,787,927	+		PFLU_RS30745	0.86	-0.8
2,787,927	+		PFLU_RS30745	0.86	-2.0
2,787,927	+		PFLU_RS30745	0.86	-0.8
2,787,927	+		PFLU_RS30745	0.86	+1.3
2,787,927	+		PFLU_RS30745	0.86	-2.1
2,787,927	+		PFLU_RS30745	0.86	-2.6
2,787,927	+		PFLU_RS30745	0.86	-1.2
2,787,927	+		PFLU_RS30745	0.86	-0.6
2,787,927	+		PFLU_RS30745	0.86	+1.5
2,787,931	+		PFLU_RS30745	0.87	-3.1
2,787,931	+		PFLU_RS30745	0.87	-2.3
2,787,931	+		PFLU_RS30745	0.87	-0.8
2,787,931	+		PFLU_RS30745	0.87	+0.6
2,787,931	+		PFLU_RS30745	0.87	-0.6
2,787,931	+		PFLU_RS30745	0.87	-0.8
2,787,931	+		PFLU_RS30745	0.87	-0.3
2,787,931	+		PFLU_RS30745	0.87	-1.5
2,787,948	+				+1.1
2,787,948	+				+1.4
2,787,948	+				-3.1
2,787,948	+				+1.1
2,787,949	-				+0.1
2,787,949	-				-0.3
2,787,963	+				+1.5
2,787,963	+				+1.4
2,787,963	+				-2.6
2,787,963	+				-2.3
2,787,963	+				+2.5
2,787,963	+				+1.2
2,787,964	-				+1.1
2,787,964	-				+0.9
2,787,964	-				+1.4
2,787,964	-				-2.3
2,787,964	-				-1.6
2,787,964	-				-2.7
2,788,012	-				-1.7
2,788,014	+				+0.7
2,788,014	+				+0.5
2,788,014	+				-1.9
2,788,014	+				-2.2
2,788,014	+				+0.4
2,788,015	-				+0.3
2,788,065	+				-2.1
2,788,066	-				+0.2
2,788,134	+		PFLU_RS12460	0.14	+0.3
2,788,134	+		PFLU_RS12460	0.14	+1.6
2,788,135	-		PFLU_RS12460	0.14	-0.1
2,788,135	-		PFLU_RS12460	0.14	-2.2
2,788,135	-		PFLU_RS12460	0.14	-2.6
2,788,188	+		PFLU_RS12460	0.20	+1.7
2,788,188	+		PFLU_RS12460	0.20	+0.8
2,788,188	+		PFLU_RS12460	0.20	-2.9
2,788,188	+		PFLU_RS12460	0.20	+1.1
2,788,188	+		PFLU_RS12460	0.20	+2.4
2,788,189	-		PFLU_RS12460	0.20	+0.2
2,788,189	-		PFLU_RS12460	0.20	+0.1
2,788,189	-		PFLU_RS12460	0.20	-0.1
2,788,189	-		PFLU_RS12460	0.20	-0.8
2,788,189	-		PFLU_RS12460	0.20	+1.5
2,788,222	-		PFLU_RS12460	0.24	-1.3
2,788,222	-		PFLU_RS12460	0.24	-0.7
2,788,242	+		PFLU_RS12460	0.27	-1.4
2,788,242	+		PFLU_RS12460	0.27	+0.8
2,788,242	+		PFLU_RS12460	0.27	-0.5
2,788,242	+		PFLU_RS12460	0.27	-3.1
2,788,242	+		PFLU_RS12460	0.27	+2.4
2,788,242	+		PFLU_RS12460	0.27	-0.9
2,788,242	+		PFLU_RS12460	0.27	-0.6
2,788,242	+		PFLU_RS12460	0.27	+2.1
2,788,242	+		PFLU_RS12460	0.27	+1.5
2,788,242	+		PFLU_RS12460	0.27	-0.4
2,788,242	+		PFLU_RS12460	0.27	+1.7
2,788,242	+		PFLU_RS12460	0.27	+0.8
2,788,242	+		PFLU_RS12460	0.27	-1.4
2,788,242	+		PFLU_RS12460	0.27	+1.2
2,788,242	+		PFLU_RS12460	0.27	-0.8
2,788,243	-		PFLU_RS12460	0.27	-2.7
2,788,243	-		PFLU_RS12460	0.27	-0.7
2,788,243	-		PFLU_RS12460	0.27	-1.0
2,788,243	-		PFLU_RS12460	0.27	-1.3
2,788,243	-		PFLU_RS12460	0.27	+0.2
2,788,243	-		PFLU_RS12460	0.27	-2.4
2,788,243	-		PFLU_RS12460	0.27	+0.8
2,788,243	-		PFLU_RS12460	0.27	+0.5
2,788,243	-		PFLU_RS12460	0.27	+0.9
2,788,243	-		PFLU_RS12460	0.27	-2.4
2,788,243	-		PFLU_RS12460	0.27	-1.6
2,788,287	+		PFLU_RS12460	0.32	-0.4
2,788,287	+		PFLU_RS12460	0.32	+0.6
2,788,287	+		PFLU_RS12460	0.32	-1.7
2,788,288	-		PFLU_RS12460	0.32	+1.6
2,788,288	-		PFLU_RS12460	0.32	-3.2
2,788,288	-		PFLU_RS12460	0.32	+0.5
2,788,288	-		PFLU_RS12460	0.32	+0.9
2,788,294	-		PFLU_RS12460	0.33	-2.2
2,788,311	+		PFLU_RS12460	0.35	-2.5
2,788,311	+		PFLU_RS12460	0.35	+0.6
2,788,311	+		PFLU_RS12460	0.35	-0.6
2,788,311	+		PFLU_RS12460	0.35	-0.7
2,788,311	+		PFLU_RS12460	0.35	-1.5
2,788,311	+		PFLU_RS12460	0.35	-0.4
2,788,311	+		PFLU_RS12460	0.35	-0.4
2,788,311	+		PFLU_RS12460	0.35	-0.1
2,788,311	+		PFLU_RS12460	0.35	-0.2
2,788,311	+		PFLU_RS12460	0.35	+1.4
2,788,311	+		PFLU_RS12460	0.35	-0.1
2,788,312	-		PFLU_RS12460	0.35	-3.4
2,788,312	-		PFLU_RS12460	0.35	-1.6
2,788,312	-		PFLU_RS12460	0.35	-0.0
2,788,312	-		PFLU_RS12460	0.35	+1.3
2,788,312	-		PFLU_RS12460	0.35	-1.5
2,788,312	-		PFLU_RS12460	0.35	-1.8
2,788,338	+		PFLU_RS12460	0.38	+0.8
2,788,379	-		PFLU_RS12460	0.43	+1.2
2,788,464	+		PFLU_RS12460	0.52	+1.6
2,788,465	-		PFLU_RS12460	0.52	+1.6
2,788,465	-		PFLU_RS12460	0.52	+0.2
2,788,465	-		PFLU_RS12460	0.52	+1.9
2,788,599	+		PFLU_RS12460	0.68	+1.0
2,788,599	+		PFLU_RS12460	0.68	-2.0
2,788,599	+		PFLU_RS12460	0.68	-1.0
2,788,599	+		PFLU_RS12460	0.68	+0.7
2,788,599	+		PFLU_RS12460	0.68	+0.6
2,788,599	+		PFLU_RS12460	0.68	+1.7
2,788,599	+		PFLU_RS12460	0.68	-0.4
2,788,599	+		PFLU_RS12460	0.68	-2.0
2,788,599	+		PFLU_RS12460	0.68	-2.7
2,788,599	+		PFLU_RS12460	0.68	-0.6
2,788,599	+		PFLU_RS12460	0.68	+1.4
2,788,600	-		PFLU_RS12460	0.68	+0.7
2,788,600	-		PFLU_RS12460	0.68	-0.0
2,788,600	-		PFLU_RS12460	0.68	-1.2
2,788,600	-		PFLU_RS12460	0.68	+0.8
2,788,600	-		PFLU_RS12460	0.68	+0.4
2,788,600	-		PFLU_RS12460	0.68	-1.3
2,788,600	-		PFLU_RS12460	0.68	+1.6
2,788,600	-		PFLU_RS12460	0.68	+0.3
2,788,600	-		PFLU_RS12460	0.68	+0.7
2,788,745	+		PFLU_RS12460	0.85	+1.1
2,788,745	+		PFLU_RS12460	0.85	+1.7
2,788,746	-		PFLU_RS12460	0.85	+1.1
2,788,778	+		PFLU_RS12460	0.89	-2.0
2,788,778	+		PFLU_RS12460	0.89	+0.2
2,788,778	+		PFLU_RS12460	0.89	+0.3
2,788,778	+		PFLU_RS12460	0.89	-0.2
2,788,909	+				-0.2
2,788,910	-				+2.6
2,788,910	-				-1.4