Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS08475 and PFLU_RS08480 are separated by 124 nucleotides PFLU_RS08480 and PFLU_RS08485 are separated by 103 nucleotides
PFLU_RS08475: PFLU_RS08475 - 3-deoxy-7-phosphoheptulonate synthase class II, at 1,888,121 to 1,889,467
_RS08475
PFLU_RS08480: PFLU_RS08480 - hypothetical protein, at 1,889,592 to 1,890,347
_RS08480
PFLU_RS08485: PFLU_RS08485 - crotonase/enoyl-CoA hydratase family protein, at 1,890,451 to 1,891,242
_RS08485
Position (kb) 1889
1890
1891 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 1888.704 kb on + strand, within PFLU_RS08475 at 1888.704 kb on + strand, within PFLU_RS08475 at 1888.704 kb on + strand, within PFLU_RS08475 at 1888.704 kb on + strand, within PFLU_RS08475 at 1888.704 kb on + strand, within PFLU_RS08475 at 1888.704 kb on + strand, within PFLU_RS08475 at 1888.704 kb on + strand, within PFLU_RS08475 at 1888.704 kb on + strand, within PFLU_RS08475 at 1888.704 kb on + strand, within PFLU_RS08475 at 1888.704 kb on + strand, within PFLU_RS08475 at 1888.705 kb on - strand, within PFLU_RS08475 at 1888.705 kb on - strand, within PFLU_RS08475 at 1888.705 kb on - strand, within PFLU_RS08475 at 1888.705 kb on - strand, within PFLU_RS08475 at 1888.705 kb on - strand, within PFLU_RS08475 at 1888.707 kb on + strand, within PFLU_RS08475 at 1888.707 kb on + strand, within PFLU_RS08475 at 1888.707 kb on + strand, within PFLU_RS08475 at 1888.707 kb on + strand, within PFLU_RS08475 at 1888.707 kb on + strand, within PFLU_RS08475 at 1888.707 kb on + strand, within PFLU_RS08475 at 1888.707 kb on + strand, within PFLU_RS08475 at 1888.707 kb on + strand, within PFLU_RS08475 at 1888.708 kb on - strand, within PFLU_RS08475 at 1888.708 kb on - strand, within PFLU_RS08475 at 1888.708 kb on - strand, within PFLU_RS08475 at 1888.708 kb on - strand, within PFLU_RS08475 at 1888.708 kb on - strand, within PFLU_RS08475 at 1888.708 kb on - strand, within PFLU_RS08475 at 1888.708 kb on - strand, within PFLU_RS08475 at 1888.708 kb on - strand, within PFLU_RS08475 at 1888.708 kb on - strand, within PFLU_RS08475 at 1888.749 kb on + strand, within PFLU_RS08475 at 1888.749 kb on + strand, within PFLU_RS08475 at 1888.749 kb on + strand, within PFLU_RS08475 at 1888.749 kb on + strand, within PFLU_RS08475 at 1888.749 kb on + strand, within PFLU_RS08475 at 1888.749 kb on + strand, within PFLU_RS08475 at 1888.750 kb on - strand, within PFLU_RS08475 at 1888.750 kb on - strand, within PFLU_RS08475 at 1888.750 kb on - strand, within PFLU_RS08475 at 1888.872 kb on + strand, within PFLU_RS08475 at 1888.872 kb on + strand, within PFLU_RS08475 at 1888.995 kb on + strand, within PFLU_RS08475 at 1888.995 kb on + strand, within PFLU_RS08475 at 1888.996 kb on - strand, within PFLU_RS08475 at 1888.996 kb on - strand, within PFLU_RS08475 at 1888.996 kb on - strand, within PFLU_RS08475 at 1888.996 kb on - strand, within PFLU_RS08475 at 1888.996 kb on - strand, within PFLU_RS08475 at 1889.007 kb on - strand, within PFLU_RS08475 at 1889.007 kb on - strand, within PFLU_RS08475 at 1889.073 kb on + strand, within PFLU_RS08475 at 1889.359 kb on - strand at 1889.508 kb on + strand at 1889.508 kb on + strand at 1889.509 kb on - strand at 1889.509 kb on - strand at 1889.509 kb on - strand at 1889.518 kb on + strand at 1889.518 kb on + strand at 1889.518 kb on + strand at 1889.518 kb on + strand at 1889.518 kb on + strand at 1889.518 kb on + strand at 1889.518 kb on + strand at 1889.519 kb on - strand at 1889.519 kb on - strand at 1889.519 kb on - strand at 1889.519 kb on - strand at 1889.519 kb on - strand at 1889.519 kb on - strand at 1889.569 kb on + strand at 1889.569 kb on + strand at 1889.569 kb on + strand at 1889.570 kb on - strand at 1889.587 kb on + strand at 1889.587 kb on + strand at 1889.588 kb on - strand at 1889.588 kb on - strand at 1889.588 kb on - strand at 1889.588 kb on - strand at 1889.588 kb on - strand at 1889.674 kb on - strand, within PFLU_RS08480 at 1889.745 kb on + strand, within PFLU_RS08480 at 1889.745 kb on + strand, within PFLU_RS08480 at 1889.745 kb on + strand, within PFLU_RS08480 at 1889.746 kb on - strand, within PFLU_RS08480 at 1889.746 kb on - strand, within PFLU_RS08480 at 1889.746 kb on - strand, within PFLU_RS08480 at 1889.751 kb on + strand, within PFLU_RS08480 at 1889.751 kb on + strand, within PFLU_RS08480 at 1889.751 kb on + strand, within PFLU_RS08480 at 1889.751 kb on + strand, within PFLU_RS08480 at 1889.752 kb on - strand, within PFLU_RS08480 at 1889.919 kb on + strand, within PFLU_RS08480 at 1889.920 kb on - strand, within PFLU_RS08480 at 1889.949 kb on + strand, within PFLU_RS08480 at 1889.949 kb on + strand, within PFLU_RS08480 at 1889.949 kb on + strand, within PFLU_RS08480 at 1889.949 kb on + strand, within PFLU_RS08480 at 1889.949 kb on + strand, within PFLU_RS08480 at 1889.949 kb on + strand, within PFLU_RS08480 at 1889.949 kb on + strand, within PFLU_RS08480 at 1889.949 kb on + strand, within PFLU_RS08480 at 1889.950 kb on - strand, within PFLU_RS08480 at 1889.950 kb on - strand, within PFLU_RS08480 at 1889.977 kb on + strand, within PFLU_RS08480 at 1890.021 kb on + strand, within PFLU_RS08480 at 1890.021 kb on + strand, within PFLU_RS08480 at 1890.021 kb on + strand, within PFLU_RS08480 at 1890.021 kb on + strand, within PFLU_RS08480 at 1890.021 kb on + strand, within PFLU_RS08480 at 1890.021 kb on + strand, within PFLU_RS08480 at 1890.022 kb on - strand, within PFLU_RS08480 at 1890.022 kb on - strand, within PFLU_RS08480 at 1890.022 kb on - strand, within PFLU_RS08480 at 1890.022 kb on - strand, within PFLU_RS08480 at 1890.022 kb on - strand, within PFLU_RS08480 at 1890.022 kb on - strand, within PFLU_RS08480 at 1890.023 kb on + strand, within PFLU_RS08480 at 1890.023 kb on + strand, within PFLU_RS08480 at 1890.023 kb on + strand, within PFLU_RS08480 at 1890.023 kb on + strand, within PFLU_RS08480 at 1890.023 kb on + strand, within PFLU_RS08480 at 1890.024 kb on - strand, within PFLU_RS08480 at 1890.024 kb on - strand, within PFLU_RS08480 at 1890.171 kb on + strand, within PFLU_RS08480 at 1890.171 kb on + strand, within PFLU_RS08480 at 1890.171 kb on + strand, within PFLU_RS08480 at 1890.172 kb on - strand, within PFLU_RS08480 at 1890.172 kb on - strand, within PFLU_RS08480 at 1890.172 kb on - strand, within PFLU_RS08480 at 1890.172 kb on - strand, within PFLU_RS08480 at 1890.172 kb on - strand, within PFLU_RS08480 at 1890.172 kb on - strand, within PFLU_RS08480 at 1890.172 kb on - strand, within PFLU_RS08480 at 1890.183 kb on + strand, within PFLU_RS08480 at 1890.184 kb on - strand, within PFLU_RS08480 at 1890.184 kb on - strand, within PFLU_RS08480 at 1890.304 kb on - strand at 1890.345 kb on + strand at 1890.345 kb on + strand at 1890.345 kb on + strand at 1890.345 kb on + strand at 1890.345 kb on + strand at 1890.345 kb on + strand at 1890.345 kb on + strand at 1890.345 kb on + strand at 1890.345 kb on + strand at 1890.345 kb on + strand at 1890.345 kb on + strand at 1890.345 kb on + strand at 1890.345 kb on + strand at 1890.345 kb on + strand at 1890.345 kb on + strand at 1890.345 kb on + strand at 1890.345 kb on + strand at 1890.345 kb on + strand at 1890.345 kb on + strand at 1890.345 kb on + strand at 1890.345 kb on + strand at 1890.345 kb on + strand at 1890.345 kb on + strand at 1890.345 kb on + strand at 1890.345 kb on + strand at 1890.346 kb on - strand at 1890.346 kb on - strand at 1890.346 kb on - strand at 1890.346 kb on - strand at 1890.346 kb on - strand at 1890.346 kb on - strand at 1890.346 kb on - strand at 1890.346 kb on - strand at 1890.346 kb on - strand at 1890.346 kb on - strand at 1890.346 kb on - strand at 1890.346 kb on - strand at 1890.346 kb on - strand at 1890.346 kb on - strand at 1890.346 kb on - strand at 1890.346 kb on - strand at 1890.346 kb on - strand at 1890.346 kb on - strand at 1890.346 kb on - strand at 1890.346 kb on - strand at 1890.346 kb on - strand at 1890.346 kb on - strand at 1890.346 kb on - strand at 1890.346 kb on - strand at 1890.346 kb on - strand at 1890.346 kb on - strand at 1890.532 kb on - strand, within PFLU_RS08485 at 1890.532 kb on - strand, within PFLU_RS08485 at 1890.915 kb on - strand, within PFLU_RS08485 at 1891.115 kb on + strand, within PFLU_RS08485 at 1891.309 kb on + strand at 1891.309 kb on + strand at 1891.316 kb on + strand at 1891.346 kb on + strand at 1891.346 kb on + strand at 1891.346 kb on + strand at 1891.347 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs remove 1,888,704 + PFLU_RS08475 0.43 -0.4 1,888,704 + PFLU_RS08475 0.43 +0.3 1,888,704 + PFLU_RS08475 0.43 -1.9 1,888,704 + PFLU_RS08475 0.43 +0.9 1,888,704 + PFLU_RS08475 0.43 -0.4 1,888,704 + PFLU_RS08475 0.43 -0.5 1,888,704 + PFLU_RS08475 0.43 -1.4 1,888,704 + PFLU_RS08475 0.43 +0.6 1,888,704 + PFLU_RS08475 0.43 -1.7 1,888,704 + PFLU_RS08475 0.43 -1.7 1,888,705 - PFLU_RS08475 0.43 -0.0 1,888,705 - PFLU_RS08475 0.43 +1.4 1,888,705 - PFLU_RS08475 0.43 +1.7 1,888,705 - PFLU_RS08475 0.43 -1.6 1,888,705 - PFLU_RS08475 0.43 -2.3 1,888,707 + PFLU_RS08475 0.44 +1.3 1,888,707 + PFLU_RS08475 0.44 +0.1 1,888,707 + PFLU_RS08475 0.44 -1.4 1,888,707 + PFLU_RS08475 0.44 -3.3 1,888,707 + PFLU_RS08475 0.44 +2.0 1,888,707 + PFLU_RS08475 0.44 +2.0 1,888,707 + PFLU_RS08475 0.44 -2.6 1,888,707 + PFLU_RS08475 0.44 -4.3 1,888,708 - PFLU_RS08475 0.44 +1.5 1,888,708 - PFLU_RS08475 0.44 -2.8 1,888,708 - PFLU_RS08475 0.44 -1.4 1,888,708 - PFLU_RS08475 0.44 +0.8 1,888,708 - PFLU_RS08475 0.44 +0.7 1,888,708 - PFLU_RS08475 0.44 -1.1 1,888,708 - PFLU_RS08475 0.44 +1.8 1,888,708 - PFLU_RS08475 0.44 +1.2 1,888,708 - PFLU_RS08475 0.44 +2.4 1,888,749 + PFLU_RS08475 0.47 -2.1 1,888,749 + PFLU_RS08475 0.47 -2.2 1,888,749 + PFLU_RS08475 0.47 +0.5 1,888,749 + PFLU_RS08475 0.47 -1.0 1,888,749 + PFLU_RS08475 0.47 -2.1 1,888,749 + PFLU_RS08475 0.47 -3.2 1,888,750 - PFLU_RS08475 0.47 +0.7 1,888,750 - PFLU_RS08475 0.47 +2.5 1,888,750 - PFLU_RS08475 0.47 -2.0 1,888,872 + PFLU_RS08475 0.56 -1.8 1,888,872 + PFLU_RS08475 0.56 -0.4 1,888,995 + PFLU_RS08475 0.65 -0.6 1,888,995 + PFLU_RS08475 0.65 +2.0 1,888,996 - PFLU_RS08475 0.65 -1.4 1,888,996 - PFLU_RS08475 0.65 -1.0 1,888,996 - PFLU_RS08475 0.65 -0.6 1,888,996 - PFLU_RS08475 0.65 +2.2 1,888,996 - PFLU_RS08475 0.65 -1.3 1,889,007 - PFLU_RS08475 0.66 -0.3 1,889,007 - PFLU_RS08475 0.66 +0.9 1,889,073 + PFLU_RS08475 0.71 -2.0 1,889,359 - +1.8 1,889,508 + -1.4 1,889,508 + -1.1 1,889,509 - -1.4 1,889,509 - -2.1 1,889,509 - -0.1 1,889,518 + +1.6 1,889,518 + -3.4 1,889,518 + -1.2 1,889,518 + +2.4 1,889,518 + -0.1 1,889,518 + -2.1 1,889,518 + -1.0 1,889,519 - -2.5 1,889,519 - -0.6 1,889,519 - +0.1 1,889,519 - -2.3 1,889,519 - +1.8 1,889,519 - -1.6 1,889,569 + +0.1 1,889,569 + -2.3 1,889,569 + -0.6 1,889,570 - +1.1 1,889,587 + -0.7 1,889,587 + -3.2 1,889,588 - +1.1 1,889,588 - -2.7 1,889,588 - -0.4 1,889,588 - -0.5 1,889,588 - +2.4 1,889,674 - PFLU_RS08480 0.11 -2.0 1,889,745 + PFLU_RS08480 0.20 -1.1 1,889,745 + PFLU_RS08480 0.20 -2.1 1,889,745 + PFLU_RS08480 0.20 +2.3 1,889,746 - PFLU_RS08480 0.20 +1.1 1,889,746 - PFLU_RS08480 0.20 -1.0 1,889,746 - PFLU_RS08480 0.20 -3.0 1,889,751 + PFLU_RS08480 0.21 +1.2 1,889,751 + PFLU_RS08480 0.21 +0.4 1,889,751 + PFLU_RS08480 0.21 -0.1 1,889,751 + PFLU_RS08480 0.21 +1.2 1,889,752 - PFLU_RS08480 0.21 -0.0 1,889,919 + PFLU_RS08480 0.43 -3.6 1,889,920 - PFLU_RS08480 0.43 -1.9 1,889,949 + PFLU_RS08480 0.47 +1.6 1,889,949 + PFLU_RS08480 0.47 -1.7 1,889,949 + PFLU_RS08480 0.47 -0.4 1,889,949 + PFLU_RS08480 0.47 -0.0 1,889,949 + PFLU_RS08480 0.47 -3.8 1,889,949 + PFLU_RS08480 0.47 +0.7 1,889,949 + PFLU_RS08480 0.47 +1.3 1,889,949 + PFLU_RS08480 0.47 +1.3 1,889,950 - PFLU_RS08480 0.47 +1.9 1,889,950 - PFLU_RS08480 0.47 +1.1 1,889,977 + PFLU_RS08480 0.51 -1.1 1,890,021 + PFLU_RS08480 0.57 +0.8 1,890,021 + PFLU_RS08480 0.57 +1.8 1,890,021 + PFLU_RS08480 0.57 -2.6 1,890,021 + PFLU_RS08480 0.57 +0.2 1,890,021 + PFLU_RS08480 0.57 -2.4 1,890,021 + PFLU_RS08480 0.57 +2.2 1,890,022 - PFLU_RS08480 0.57 -0.8 1,890,022 - PFLU_RS08480 0.57 -3.1 1,890,022 - PFLU_RS08480 0.57 +0.8 1,890,022 - PFLU_RS08480 0.57 +1.6 1,890,022 - PFLU_RS08480 0.57 -2.4 1,890,022 - PFLU_RS08480 0.57 +1.1 1,890,023 + PFLU_RS08480 0.57 +2.0 1,890,023 + PFLU_RS08480 0.57 -1.6 1,890,023 + PFLU_RS08480 0.57 +1.5 1,890,023 + PFLU_RS08480 0.57 -0.6 1,890,023 + PFLU_RS08480 0.57 +2.6 1,890,024 - PFLU_RS08480 0.57 -0.6 1,890,024 - PFLU_RS08480 0.57 -1.8 1,890,171 + PFLU_RS08480 0.77 +1.6 1,890,171 + PFLU_RS08480 0.77 +0.7 1,890,171 + PFLU_RS08480 0.77 +0.1 1,890,172 - PFLU_RS08480 0.77 +0.5 1,890,172 - PFLU_RS08480 0.77 -0.9 1,890,172 - PFLU_RS08480 0.77 -1.9 1,890,172 - PFLU_RS08480 0.77 -0.5 1,890,172 - PFLU_RS08480 0.77 -0.1 1,890,172 - PFLU_RS08480 0.77 -2.8 1,890,172 - PFLU_RS08480 0.77 +0.5 1,890,183 + PFLU_RS08480 0.78 -1.5 1,890,184 - PFLU_RS08480 0.78 -2.4 1,890,184 - PFLU_RS08480 0.78 +0.8 1,890,304 - -2.6 1,890,345 + -1.6 1,890,345 + +0.4 1,890,345 + -1.5 1,890,345 + +1.6 1,890,345 + -1.1 1,890,345 + -0.1 1,890,345 + -2.6 1,890,345 + +2.3 1,890,345 + +0.8 1,890,345 + -0.3 1,890,345 + +0.7 1,890,345 + -2.4 1,890,345 + +1.1 1,890,345 + -2.9 1,890,345 + -2.4 1,890,345 + +1.9 1,890,345 + -1.2 1,890,345 + -3.1 1,890,345 + +0.9 1,890,345 + -2.5 1,890,345 + +0.6 1,890,345 + -2.6 1,890,345 + +2.0 1,890,345 + +0.1 1,890,345 + -1.7 1,890,346 - +1.7 1,890,346 - -3.1 1,890,346 - -0.1 1,890,346 - +0.2 1,890,346 - +0.2 1,890,346 - -1.5 1,890,346 - +1.0 1,890,346 - +3.1 1,890,346 - -0.1 1,890,346 - +2.0 1,890,346 - +1.1 1,890,346 - -2.3 1,890,346 - -1.5 1,890,346 - -2.6 1,890,346 - +0.8 1,890,346 - +0.1 1,890,346 - +3.6 1,890,346 - +1.6 1,890,346 - -0.8 1,890,346 - +1.7 1,890,346 - -2.6 1,890,346 - -2.7 1,890,346 - -1.3 1,890,346 - -0.4 1,890,346 - -1.6 1,890,346 - -1.7 1,890,532 - PFLU_RS08485 0.10 -2.3 1,890,532 - PFLU_RS08485 0.10 +1.1 1,890,915 - PFLU_RS08485 0.59 -2.2 1,891,115 + PFLU_RS08485 0.84 -1.7 1,891,309 + +1.1 1,891,309 + -0.5 1,891,316 + -3.0 1,891,346 + +0.4 1,891,346 + +1.2 1,891,346 + -2.5 1,891,347 - -3.0
Or see this region's nucleotide sequence