Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS03470

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS03465 and PFLU_RS03470 are separated by 18 nucleotidesPFLU_RS03470 and PFLU_RS03475 overlap by 86 nucleotides PFLU_RS03465: PFLU_RS03465 - efflux RND transporter periplasmic adaptor subunit, at 797,881 to 798,987 _RS03465 PFLU_RS03470: PFLU_RS03470 - CusA/CzcA family heavy metal efflux RND transporter, at 799,006 to 802,152 _RS03470 PFLU_RS03475: PFLU_RS03475 - heavy metal sensor histidine kinase, at 802,067 to 803,503 _RS03475 Position (kb) 799 800 801 802 803Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 798.033 kb on + strand, within PFLU_RS03465at 798.033 kb on + strand, within PFLU_RS03465at 798.033 kb on + strand, within PFLU_RS03465at 798.033 kb on + strand, within PFLU_RS03465at 798.034 kb on - strand, within PFLU_RS03465at 798.085 kb on - strand, within PFLU_RS03465at 798.085 kb on - strand, within PFLU_RS03465at 798.085 kb on - strand, within PFLU_RS03465at 798.307 kb on + strand, within PFLU_RS03465at 798.307 kb on + strand, within PFLU_RS03465at 798.307 kb on + strand, within PFLU_RS03465at 798.308 kb on - strand, within PFLU_RS03465at 798.308 kb on - strand, within PFLU_RS03465at 798.308 kb on - strand, within PFLU_RS03465at 798.308 kb on - strand, within PFLU_RS03465at 798.308 kb on - strand, within PFLU_RS03465at 798.380 kb on + strand, within PFLU_RS03465at 798.381 kb on - strand, within PFLU_RS03465at 798.381 kb on - strand, within PFLU_RS03465at 798.381 kb on - strand, within PFLU_RS03465at 798.381 kb on - strand, within PFLU_RS03465at 798.542 kb on + strand, within PFLU_RS03465at 798.542 kb on + strand, within PFLU_RS03465at 798.542 kb on + strand, within PFLU_RS03465at 798.543 kb on - strand, within PFLU_RS03465at 798.543 kb on - strand, within PFLU_RS03465at 798.567 kb on - strand, within PFLU_RS03465at 798.567 kb on - strand, within PFLU_RS03465at 798.567 kb on - strand, within PFLU_RS03465at 798.567 kb on - strand, within PFLU_RS03465at 798.567 kb on - strand, within PFLU_RS03465at 798.567 kb on - strand, within PFLU_RS03465at 798.567 kb on - strand, within PFLU_RS03465at 798.567 kb on - strand, within PFLU_RS03465at 798.634 kb on + strand, within PFLU_RS03465at 798.635 kb on - strand, within PFLU_RS03465at 798.635 kb on - strand, within PFLU_RS03465at 798.635 kb on - strand, within PFLU_RS03465at 798.635 kb on - strand, within PFLU_RS03465at 798.722 kb on + strand, within PFLU_RS03465at 798.723 kb on - strand, within PFLU_RS03465at 799.020 kb on + strandat 799.096 kb on + strandat 799.096 kb on + strandat 799.097 kb on - strandat 799.477 kb on + strand, within PFLU_RS03470at 799.477 kb on + strand, within PFLU_RS03470at 799.477 kb on + strand, within PFLU_RS03470at 799.477 kb on + strand, within PFLU_RS03470at 799.478 kb on - strand, within PFLU_RS03470at 799.622 kb on - strand, within PFLU_RS03470at 799.662 kb on + strand, within PFLU_RS03470at 799.663 kb on - strand, within PFLU_RS03470at 799.687 kb on + strand, within PFLU_RS03470at 799.688 kb on - strand, within PFLU_RS03470at 799.688 kb on - strand, within PFLU_RS03470at 799.712 kb on + strand, within PFLU_RS03470at 799.713 kb on - strand, within PFLU_RS03470at 799.713 kb on - strand, within PFLU_RS03470at 799.713 kb on - strand, within PFLU_RS03470at 799.713 kb on - strand, within PFLU_RS03470at 799.882 kb on - strand, within PFLU_RS03470at 799.993 kb on + strand, within PFLU_RS03470at 799.994 kb on - strand, within PFLU_RS03470at 800.220 kb on + strand, within PFLU_RS03470at 800.392 kb on + strand, within PFLU_RS03470at 800.392 kb on + strand, within PFLU_RS03470at 800.392 kb on + strand, within PFLU_RS03470at 800.392 kb on + strand, within PFLU_RS03470at 800.392 kb on + strand, within PFLU_RS03470at 800.392 kb on + strand, within PFLU_RS03470at 800.392 kb on + strand, within PFLU_RS03470at 800.393 kb on - strand, within PFLU_RS03470at 800.393 kb on - strand, within PFLU_RS03470at 800.393 kb on - strand, within PFLU_RS03470at 800.393 kb on - strand, within PFLU_RS03470at 800.393 kb on - strand, within PFLU_RS03470at 800.462 kb on + strand, within PFLU_RS03470at 800.463 kb on - strand, within PFLU_RS03470at 800.463 kb on - strand, within PFLU_RS03470at 800.581 kb on + strand, within PFLU_RS03470at 800.582 kb on - strand, within PFLU_RS03470at 800.582 kb on - strand, within PFLU_RS03470at 800.835 kb on + strand, within PFLU_RS03470at 800.890 kb on + strand, within PFLU_RS03470at 800.890 kb on + strand, within PFLU_RS03470at 800.890 kb on + strand, within PFLU_RS03470at 800.890 kb on + strand, within PFLU_RS03470at 800.890 kb on + strand, within PFLU_RS03470at 800.890 kb on + strand, within PFLU_RS03470at 800.890 kb on + strand, within PFLU_RS03470at 800.890 kb on + strand, within PFLU_RS03470at 800.890 kb on + strand, within PFLU_RS03470at 800.890 kb on + strand, within PFLU_RS03470at 800.891 kb on - strand, within PFLU_RS03470at 800.891 kb on - strand, within PFLU_RS03470at 800.891 kb on - strand, within PFLU_RS03470at 800.891 kb on - strand, within PFLU_RS03470at 800.891 kb on - strand, within PFLU_RS03470at 800.891 kb on - strand, within PFLU_RS03470at 800.891 kb on - strand, within PFLU_RS03470at 800.891 kb on - strand, within PFLU_RS03470at 800.891 kb on - strand, within PFLU_RS03470at 800.891 kb on - strand, within PFLU_RS03470at 800.891 kb on - strand, within PFLU_RS03470at 800.995 kb on + strand, within PFLU_RS03470at 800.996 kb on - strand, within PFLU_RS03470at 801.288 kb on + strand, within PFLU_RS03470at 801.295 kb on + strand, within PFLU_RS03470at 801.295 kb on + strand, within PFLU_RS03470at 801.295 kb on + strand, within PFLU_RS03470at 801.295 kb on + strand, within PFLU_RS03470at 801.296 kb on - strand, within PFLU_RS03470at 801.296 kb on - strand, within PFLU_RS03470at 801.418 kb on - strand, within PFLU_RS03470at 801.822 kb on + strand, within PFLU_RS03470at 801.823 kb on - strand, within PFLU_RS03470at 802.059 kb on + strandat 802.059 kb on + strandat 802.060 kb on - strandat 802.068 kb on + strandat 802.068 kb on + strandat 802.069 kb on - strandat 802.069 kb on - strandat 802.069 kb on - strandat 802.102 kb on + strandat 802.102 kb on + strandat 802.102 kb on + strandat 802.102 kb on + strandat 802.102 kb on + strandat 802.102 kb on + strandat 802.102 kb on + strandat 802.102 kb on + strandat 802.103 kb on - strandat 802.103 kb on - strandat 802.357 kb on - strand, within PFLU_RS03475at 802.357 kb on - strand, within PFLU_RS03475at 802.377 kb on - strand, within PFLU_RS03475at 802.377 kb on - strand, within PFLU_RS03475at 802.377 kb on - strand, within PFLU_RS03475at 802.377 kb on - strand, within PFLU_RS03475at 802.652 kb on - strand, within PFLU_RS03475at 802.674 kb on + strand, within PFLU_RS03475at 802.674 kb on + strand, within PFLU_RS03475at 802.674 kb on + strand, within PFLU_RS03475at 802.674 kb on + strand, within PFLU_RS03475at 802.674 kb on + strand, within PFLU_RS03475at 802.674 kb on + strand, within PFLU_RS03475at 802.674 kb on + strand, within PFLU_RS03475at 802.674 kb on + strand, within PFLU_RS03475at 802.674 kb on + strand, within PFLU_RS03475at 802.675 kb on - strand, within PFLU_RS03475at 802.675 kb on - strand, within PFLU_RS03475at 802.675 kb on - strand, within PFLU_RS03475at 802.675 kb on - strand, within PFLU_RS03475at 802.675 kb on - strand, within PFLU_RS03475at 802.675 kb on - strand, within PFLU_RS03475at 802.675 kb on - strand, within PFLU_RS03475at 802.675 kb on - strand, within PFLU_RS03475at 802.675 kb on - strand, within PFLU_RS03475at 802.675 kb on - strand, within PFLU_RS03475at 802.675 kb on - strand, within PFLU_RS03475at 802.675 kb on - strand, within PFLU_RS03475at 802.675 kb on - strand, within PFLU_RS03475at 803.016 kb on + strand, within PFLU_RS03475at 803.016 kb on + strand, within PFLU_RS03475at 803.016 kb on + strand, within PFLU_RS03475at 803.016 kb on + strand, within PFLU_RS03475at 803.017 kb on - strand, within PFLU_RS03475at 803.017 kb on - strand, within PFLU_RS03475at 803.149 kb on - strand, within PFLU_RS03475at 803.149 kb on - strand, within PFLU_RS03475

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Per-strain Table

Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs
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798,033 + PFLU_RS03465 0.14 -1.9
798,033 + PFLU_RS03465 0.14 +0.8
798,033 + PFLU_RS03465 0.14 -2.4
798,033 + PFLU_RS03465 0.14 -0.7
798,034 - PFLU_RS03465 0.14 +0.0
798,085 - PFLU_RS03465 0.18 +0.6
798,085 - PFLU_RS03465 0.18 +1.0
798,085 - PFLU_RS03465 0.18 +1.7
798,307 + PFLU_RS03465 0.38 -3.0
798,307 + PFLU_RS03465 0.38 +1.2
798,307 + PFLU_RS03465 0.38 -1.8
798,308 - PFLU_RS03465 0.39 +1.5
798,308 - PFLU_RS03465 0.39 -1.9
798,308 - PFLU_RS03465 0.39 +0.3
798,308 - PFLU_RS03465 0.39 -0.6
798,308 - PFLU_RS03465 0.39 +0.6
798,380 + PFLU_RS03465 0.45 +0.5
798,381 - PFLU_RS03465 0.45 +2.5
798,381 - PFLU_RS03465 0.45 +1.4
798,381 - PFLU_RS03465 0.45 +1.1
798,381 - PFLU_RS03465 0.45 +0.4
798,542 + PFLU_RS03465 0.60 +1.0
798,542 + PFLU_RS03465 0.60 -1.8
798,542 + PFLU_RS03465 0.60 -3.6
798,543 - PFLU_RS03465 0.60 -2.6
798,543 - PFLU_RS03465 0.60 +2.2
798,567 - PFLU_RS03465 0.62 -1.6
798,567 - PFLU_RS03465 0.62 -0.3
798,567 - PFLU_RS03465 0.62 +1.4
798,567 - PFLU_RS03465 0.62 -0.3
798,567 - PFLU_RS03465 0.62 +1.0
798,567 - PFLU_RS03465 0.62 -1.9
798,567 - PFLU_RS03465 0.62 +1.4
798,567 - PFLU_RS03465 0.62 +1.4
798,634 + PFLU_RS03465 0.68 -1.9
798,635 - PFLU_RS03465 0.68 -1.8
798,635 - PFLU_RS03465 0.68 +0.2
798,635 - PFLU_RS03465 0.68 -2.1
798,635 - PFLU_RS03465 0.68 -1.8
798,722 + PFLU_RS03465 0.76 +2.1
798,723 - PFLU_RS03465 0.76 +0.4
799,020 + -0.3
799,096 + +0.2
799,096 + +0.4
799,097 - +0.6
799,477 + PFLU_RS03470 0.15 -1.2
799,477 + PFLU_RS03470 0.15 +1.6
799,477 + PFLU_RS03470 0.15 +1.6
799,477 + PFLU_RS03470 0.15 +0.5
799,478 - PFLU_RS03470 0.15 -2.8
799,622 - PFLU_RS03470 0.20 -3.6
799,662 + PFLU_RS03470 0.21 -0.5
799,663 - PFLU_RS03470 0.21 -2.1
799,687 + PFLU_RS03470 0.22 +1.0
799,688 - PFLU_RS03470 0.22 -0.1
799,688 - PFLU_RS03470 0.22 -2.2
799,712 + PFLU_RS03470 0.22 -0.7
799,713 - PFLU_RS03470 0.22 +0.8
799,713 - PFLU_RS03470 0.22 -2.8
799,713 - PFLU_RS03470 0.22 -1.6
799,713 - PFLU_RS03470 0.22 +0.9
799,882 - PFLU_RS03470 0.28 +0.7
799,993 + PFLU_RS03470 0.31 -3.5
799,994 - PFLU_RS03470 0.31 -1.2
800,220 + PFLU_RS03470 0.39 +1.5
800,392 + PFLU_RS03470 0.44 -1.2
800,392 + PFLU_RS03470 0.44 -1.3
800,392 + PFLU_RS03470 0.44 +1.5
800,392 + PFLU_RS03470 0.44 -0.2
800,392 + PFLU_RS03470 0.44 +1.5
800,392 + PFLU_RS03470 0.44 -1.6
800,392 + PFLU_RS03470 0.44 -0.4
800,393 - PFLU_RS03470 0.44 +1.2
800,393 - PFLU_RS03470 0.44 +1.1
800,393 - PFLU_RS03470 0.44 +1.8
800,393 - PFLU_RS03470 0.44 +1.1
800,393 - PFLU_RS03470 0.44 +1.4
800,462 + PFLU_RS03470 0.46 -2.8
800,463 - PFLU_RS03470 0.46 -3.1
800,463 - PFLU_RS03470 0.46 +0.8
800,581 + PFLU_RS03470 0.50 +1.2
800,582 - PFLU_RS03470 0.50 -0.0
800,582 - PFLU_RS03470 0.50 -0.6
800,835 + PFLU_RS03470 0.58 +1.9
800,890 + PFLU_RS03470 0.60 -3.6
800,890 + PFLU_RS03470 0.60 -0.5
800,890 + PFLU_RS03470 0.60 +0.2
800,890 + PFLU_RS03470 0.60 +0.5
800,890 + PFLU_RS03470 0.60 +1.1
800,890 + PFLU_RS03470 0.60 +0.5
800,890 + PFLU_RS03470 0.60 +1.9
800,890 + PFLU_RS03470 0.60 +0.8
800,890 + PFLU_RS03470 0.60 -3.3
800,890 + PFLU_RS03470 0.60 -2.4
800,891 - PFLU_RS03470 0.60 -3.6
800,891 - PFLU_RS03470 0.60 -0.6
800,891 - PFLU_RS03470 0.60 -3.0
800,891 - PFLU_RS03470 0.60 +1.8
800,891 - PFLU_RS03470 0.60 +1.9
800,891 - PFLU_RS03470 0.60 -1.9
800,891 - PFLU_RS03470 0.60 -1.6
800,891 - PFLU_RS03470 0.60 -0.1
800,891 - PFLU_RS03470 0.60 +0.8
800,891 - PFLU_RS03470 0.60 -1.1
800,891 - PFLU_RS03470 0.60 +0.9
800,995 + PFLU_RS03470 0.63 -0.4
800,996 - PFLU_RS03470 0.63 +0.1
801,288 + PFLU_RS03470 0.73 +1.5
801,295 + PFLU_RS03470 0.73 -2.0
801,295 + PFLU_RS03470 0.73 -0.5
801,295 + PFLU_RS03470 0.73 +1.5
801,295 + PFLU_RS03470 0.73 +2.7
801,296 - PFLU_RS03470 0.73 +0.0
801,296 - PFLU_RS03470 0.73 -0.1
801,418 - PFLU_RS03470 0.77 +1.1
801,822 + PFLU_RS03470 0.89 -2.6
801,823 - PFLU_RS03470 0.90 +0.6
802,059 + +0.7
802,059 + +2.4
802,060 - -4.4
802,068 + +1.9
802,068 + +0.4
802,069 - -1.0
802,069 - +1.1
802,069 - -3.2
802,102 + -0.2
802,102 + -0.4
802,102 + -2.5
802,102 + +0.9
802,102 + +1.5
802,102 + +0.0
802,102 + -0.7
802,102 + +1.5
802,103 - +2.7
802,103 - +0.1
802,357 - PFLU_RS03475 0.20 -0.1
802,357 - PFLU_RS03475 0.20 -3.2
802,377 - PFLU_RS03475 0.22 +0.9
802,377 - PFLU_RS03475 0.22 -0.8
802,377 - PFLU_RS03475 0.22 -0.1
802,377 - PFLU_RS03475 0.22 +0.1
802,652 - PFLU_RS03475 0.41 -0.4
802,674 + PFLU_RS03475 0.42 +0.5
802,674 + PFLU_RS03475 0.42 -1.1
802,674 + PFLU_RS03475 0.42 +2.1
802,674 + PFLU_RS03475 0.42 -1.0
802,674 + PFLU_RS03475 0.42 +0.6
802,674 + PFLU_RS03475 0.42 +0.1
802,674 + PFLU_RS03475 0.42 -0.8
802,674 + PFLU_RS03475 0.42 -0.2
802,674 + PFLU_RS03475 0.42 +0.9
802,675 - PFLU_RS03475 0.42 -1.2
802,675 - PFLU_RS03475 0.42 +0.6
802,675 - PFLU_RS03475 0.42 -3.3
802,675 - PFLU_RS03475 0.42 +1.2
802,675 - PFLU_RS03475 0.42 -1.5
802,675 - PFLU_RS03475 0.42 +2.2
802,675 - PFLU_RS03475 0.42 -2.6
802,675 - PFLU_RS03475 0.42 +0.2
802,675 - PFLU_RS03475 0.42 -2.0
802,675 - PFLU_RS03475 0.42 -0.7
802,675 - PFLU_RS03475 0.42 -1.8
802,675 - PFLU_RS03475 0.42 -3.0
802,675 - PFLU_RS03475 0.42 -2.1
803,016 + PFLU_RS03475 0.66 -3.1
803,016 + PFLU_RS03475 0.66 -0.2
803,016 + PFLU_RS03475 0.66 +0.0
803,016 + PFLU_RS03475 0.66 -0.0
803,017 - PFLU_RS03475 0.66 -0.0
803,017 - PFLU_RS03475 0.66 +0.7
803,149 - PFLU_RS03475 0.75 -2.3
803,149 - PFLU_RS03475 0.75 +1.9

Or see this region's nucleotide sequence