Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS13895

Experiment: diet=HighFatHighSugar; sample=FecalPellet; mouse12; day1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBBR_RS13890 and BBR_RS13895 are separated by 228 nucleotidesBBR_RS13895 and BBR_RS13900 overlap by 11 nucleotides BBR_RS13890: BBR_RS13890 - bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ, at 895,996 to 897,171 _RS13890 BBR_RS13895: BBR_RS13895 - acetylglutamate kinase, at 897,400 to 898,356 _RS13895 BBR_RS13900: BBR_RS13900 - acetylornithine transaminase, at 898,346 to 899,641 _RS13900 Position (kb) 897 898 899Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 896.409 kb on + strand, within BBR_RS13890at 896.414 kb on + strand, within BBR_RS13890at 896.425 kb on + strand, within BBR_RS13890at 896.462 kb on + strand, within BBR_RS13890at 896.462 kb on + strand, within BBR_RS13890at 896.464 kb on + strand, within BBR_RS13890at 896.472 kb on + strand, within BBR_RS13890at 896.506 kb on + strand, within BBR_RS13890at 896.513 kb on - strand, within BBR_RS13890at 896.540 kb on + strand, within BBR_RS13890at 896.550 kb on - strand, within BBR_RS13890at 896.569 kb on + strand, within BBR_RS13890at 896.574 kb on + strand, within BBR_RS13890at 896.574 kb on + strand, within BBR_RS13890at 896.579 kb on + strand, within BBR_RS13890at 896.584 kb on + strand, within BBR_RS13890at 896.589 kb on + strand, within BBR_RS13890at 896.600 kb on + strand, within BBR_RS13890at 896.604 kb on + strand, within BBR_RS13890at 896.661 kb on + strand, within BBR_RS13890at 896.720 kb on + strand, within BBR_RS13890at 896.839 kb on + strand, within BBR_RS13890at 896.845 kb on + strand, within BBR_RS13890at 896.902 kb on + strand, within BBR_RS13890at 896.920 kb on + strand, within BBR_RS13890at 896.930 kb on + strand, within BBR_RS13890at 896.976 kb on + strand, within BBR_RS13890at 897.025 kb on + strand, within BBR_RS13890at 897.033 kb on - strand, within BBR_RS13890at 897.044 kb on - strand, within BBR_RS13890at 897.047 kb on + strand, within BBR_RS13890at 897.055 kb on - strandat 897.073 kb on + strandat 897.124 kb on + strandat 897.147 kb on + strandat 897.155 kb on - strandat 897.185 kb on + strandat 897.185 kb on + strandat 897.218 kb on - strandat 897.299 kb on + strandat 897.336 kb on - strandat 897.344 kb on + strandat 897.352 kb on + strandat 897.360 kb on - strandat 897.409 kb on + strandat 897.475 kb on - strandat 897.492 kb on + strandat 897.514 kb on + strand, within BBR_RS13895at 897.585 kb on + strand, within BBR_RS13895at 897.667 kb on + strand, within BBR_RS13895at 897.668 kb on - strand, within BBR_RS13895at 897.697 kb on + strand, within BBR_RS13895at 897.742 kb on + strand, within BBR_RS13895at 897.775 kb on + strand, within BBR_RS13895at 897.834 kb on + strand, within BBR_RS13895at 897.880 kb on + strand, within BBR_RS13895at 897.918 kb on - strand, within BBR_RS13895at 897.984 kb on + strand, within BBR_RS13895at 898.000 kb on - strand, within BBR_RS13895at 898.130 kb on + strand, within BBR_RS13895at 898.225 kb on - strand, within BBR_RS13895at 898.250 kb on + strand, within BBR_RS13895at 898.278 kb on + strandat 898.330 kb on + strandat 898.340 kb on + strandat 898.350 kb on + strandat 898.407 kb on + strandat 898.407 kb on + strandat 898.534 kb on + strand, within BBR_RS13900at 898.555 kb on + strand, within BBR_RS13900at 898.589 kb on + strand, within BBR_RS13900at 898.671 kb on + strand, within BBR_RS13900at 898.735 kb on + strand, within BBR_RS13900at 898.758 kb on + strand, within BBR_RS13900at 898.758 kb on + strand, within BBR_RS13900at 898.763 kb on + strand, within BBR_RS13900at 898.788 kb on + strand, within BBR_RS13900at 898.871 kb on + strand, within BBR_RS13900at 898.871 kb on + strand, within BBR_RS13900at 898.925 kb on + strand, within BBR_RS13900at 898.938 kb on - strand, within BBR_RS13900at 898.938 kb on - strand, within BBR_RS13900at 899.010 kb on - strand, within BBR_RS13900at 899.044 kb on + strand, within BBR_RS13900at 899.102 kb on + strand, within BBR_RS13900at 899.102 kb on + strand, within BBR_RS13900at 899.178 kb on + strand, within BBR_RS13900at 899.180 kb on + strand, within BBR_RS13900at 899.180 kb on + strand, within BBR_RS13900at 899.255 kb on + strand, within BBR_RS13900at 899.255 kb on + strand, within BBR_RS13900at 899.279 kb on + strand, within BBR_RS13900at 899.287 kb on - strand, within BBR_RS13900

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction diet=HighFatHighSugar; sample=FecalPellet; mouse12; day1
remove
896,409 + BBR_RS13890 0.35 +1.5
896,414 + BBR_RS13890 0.36 -2.2
896,425 + BBR_RS13890 0.36 -1.9
896,462 + BBR_RS13890 0.40 -3.6
896,462 + BBR_RS13890 0.40 -3.0
896,464 + BBR_RS13890 0.40 -1.2
896,472 + BBR_RS13890 0.40 +0.5
896,506 + BBR_RS13890 0.43 +0.3
896,513 - BBR_RS13890 0.44 +0.7
896,540 + BBR_RS13890 0.46 -0.3
896,550 - BBR_RS13890 0.47 -1.2
896,569 + BBR_RS13890 0.49 -1.1
896,574 + BBR_RS13890 0.49 -0.2
896,574 + BBR_RS13890 0.49 +1.5
896,579 + BBR_RS13890 0.50 -0.7
896,584 + BBR_RS13890 0.50 -2.4
896,589 + BBR_RS13890 0.50 -1.0
896,600 + BBR_RS13890 0.51 +0.4
896,604 + BBR_RS13890 0.52 -0.2
896,661 + BBR_RS13890 0.57 +0.7
896,720 + BBR_RS13890 0.62 -2.6
896,839 + BBR_RS13890 0.72 -0.2
896,845 + BBR_RS13890 0.72 -1.5
896,902 + BBR_RS13890 0.77 +0.3
896,920 + BBR_RS13890 0.79 -1.2
896,930 + BBR_RS13890 0.79 +0.6
896,976 + BBR_RS13890 0.83 -3.1
897,025 + BBR_RS13890 0.88 +1.0
897,033 - BBR_RS13890 0.88 -4.0
897,044 - BBR_RS13890 0.89 +0.5
897,047 + BBR_RS13890 0.89 +1.4
897,055 - +0.7
897,073 + -0.4
897,124 + -1.0
897,147 + -0.3
897,155 - +0.7
897,185 + -2.2
897,185 + -1.1
897,218 - -0.5
897,299 + +0.9
897,336 - -0.0
897,344 + -0.7
897,352 + -0.5
897,360 - -0.1
897,409 + +0.7
897,475 - -0.8
897,492 + -2.5
897,514 + BBR_RS13895 0.12 +1.6
897,585 + BBR_RS13895 0.19 +1.6
897,667 + BBR_RS13895 0.28 -0.8
897,668 - BBR_RS13895 0.28 +0.4
897,697 + BBR_RS13895 0.31 -0.5
897,742 + BBR_RS13895 0.36 +0.2
897,775 + BBR_RS13895 0.39 -1.9
897,834 + BBR_RS13895 0.45 +0.5
897,880 + BBR_RS13895 0.50 +1.6
897,918 - BBR_RS13895 0.54 -1.5
897,984 + BBR_RS13895 0.61 +2.3
898,000 - BBR_RS13895 0.63 -1.0
898,130 + BBR_RS13895 0.76 -1.7
898,225 - BBR_RS13895 0.86 +1.3
898,250 + BBR_RS13895 0.89 +0.7
898,278 + +0.9
898,330 + +1.6
898,340 + -0.8
898,350 + +0.6
898,407 + +0.3
898,407 + +0.9
898,534 + BBR_RS13900 0.15 +2.5
898,555 + BBR_RS13900 0.16 +1.3
898,589 + BBR_RS13900 0.19 +1.1
898,671 + BBR_RS13900 0.25 -2.9
898,735 + BBR_RS13900 0.30 -0.4
898,758 + BBR_RS13900 0.32 +2.2
898,758 + BBR_RS13900 0.32 +0.6
898,763 + BBR_RS13900 0.32 -2.5
898,788 + BBR_RS13900 0.34 +0.4
898,871 + BBR_RS13900 0.41 -0.5
898,871 + BBR_RS13900 0.41 +2.4
898,925 + BBR_RS13900 0.45 +0.1
898,938 - BBR_RS13900 0.46 +1.6
898,938 - BBR_RS13900 0.46 +1.1
899,010 - BBR_RS13900 0.51 -2.1
899,044 + BBR_RS13900 0.54 -1.9
899,102 + BBR_RS13900 0.58 -1.5
899,102 + BBR_RS13900 0.58 -1.5
899,178 + BBR_RS13900 0.64 -0.8
899,180 + BBR_RS13900 0.64 +0.6
899,180 + BBR_RS13900 0.64 -2.3
899,255 + BBR_RS13900 0.70 +0.8
899,255 + BBR_RS13900 0.70 +1.0
899,279 + BBR_RS13900 0.72 -1.5
899,287 - BBR_RS13900 0.73 +2.0

Or see this region's nucleotide sequence