Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS10805

Experiment: diet=HighFatHighSugar; sample=FecalPellet; mouse12; day1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	diet=HighFatHighSugar; sample=FecalPellet; mouse12; day1
152,105	-		BBR_RS10800	0.33	+0.1
152,110	-		BBR_RS10800	0.33	-1.6
152,110	-		BBR_RS10800	0.33	+0.2
152,117	+		BBR_RS10800	0.34	+0.3
152,131	-		BBR_RS10800	0.35	+0.1
152,135	+		BBR_RS10800	0.36	-3.0
152,145	+		BBR_RS10800	0.37	+0.1
152,154	+		BBR_RS10800	0.38	-0.7
152,163	-		BBR_RS10800	0.38	-1.2
152,175	+		BBR_RS10800	0.40	+0.1
152,177	+		BBR_RS10800	0.40	-1.5
152,180	+		BBR_RS10800	0.40	-1.4
152,191	+		BBR_RS10800	0.41	+0.5
152,191	+		BBR_RS10800	0.41	-0.3
152,198	-		BBR_RS10800	0.42	-0.0
152,198	-		BBR_RS10800	0.42	-0.6
152,217	+		BBR_RS10800	0.44	-2.7
152,225	-		BBR_RS10800	0.44	+0.4
152,226	+		BBR_RS10800	0.44	-3.8
152,234	+		BBR_RS10800	0.45	+1.3
152,235	+		BBR_RS10800	0.45	-2.3
152,235	+		BBR_RS10800	0.45	+1.4
152,240	+		BBR_RS10800	0.46	+1.1
152,240	+		BBR_RS10800	0.46	-0.0
152,242	-		BBR_RS10800	0.46	-0.1
152,242	-		BBR_RS10800	0.46	+1.5
152,242	-		BBR_RS10800	0.46	-0.2
152,248	-		BBR_RS10800	0.47	+0.7
152,248	-		BBR_RS10800	0.47	+0.3
152,248	-		BBR_RS10800	0.47	+0.5
152,248	-		BBR_RS10800	0.47	-2.3
152,252	+		BBR_RS10800	0.47	-1.1
152,252	+		BBR_RS10800	0.47	+0.0
152,260	-		BBR_RS10800	0.48	+1.1
152,264	+		BBR_RS10800	0.48	-0.6
152,264	+		BBR_RS10800	0.48	+1.3
152,264	+		BBR_RS10800	0.48	+0.8
152,264	+		BBR_RS10800	0.48	+1.1
152,264	+		BBR_RS10800	0.48	-0.4
152,264	+		BBR_RS10800	0.48	+0.2
152,271	+		BBR_RS10800	0.49	+0.4
152,271	+		BBR_RS10800	0.49	-0.3
152,271	+		BBR_RS10800	0.49	+0.3
152,271	+		BBR_RS10800	0.49	-2.2
152,279	-		BBR_RS10800	0.49	-2.6
152,280	-		BBR_RS10800	0.50	+0.3
152,300	+		BBR_RS10800	0.51	+0.1
152,308	+		BBR_RS10800	0.52	-3.0
152,308	+		BBR_RS10800	0.52	+0.2
152,308	+		BBR_RS10800	0.52	-1.9
152,311	+		BBR_RS10800	0.53	+0.6
152,314	-		BBR_RS10800	0.53	-0.4
152,316	+		BBR_RS10800	0.53	+0.7
152,316	-		BBR_RS10800	0.53	-2.7
152,319	-		BBR_RS10800	0.53	-1.7
152,319	-		BBR_RS10800	0.53	+0.1
152,321	+		BBR_RS10800	0.53	+0.8
152,326	+		BBR_RS10800	0.54	-2.6
152,329	-		BBR_RS10800	0.54	-1.3
152,331	+		BBR_RS10800	0.54	+1.7
152,331	+		BBR_RS10800	0.54	-0.3
152,334	-		BBR_RS10800	0.55	+0.4
152,352	+		BBR_RS10800	0.56	-2.7
152,359	-		BBR_RS10800	0.57	-0.7
152,363	-		BBR_RS10800	0.57	-2.1
152,376	-		BBR_RS10800	0.59	+1.6
152,388	+		BBR_RS10800	0.60	+0.9
152,388	+		BBR_RS10800	0.60	-2.9
152,402	+		BBR_RS10800	0.61	-0.5
152,418	-		BBR_RS10800	0.63	+0.6
152,434	+		BBR_RS10800	0.64	+0.3
152,443	-		BBR_RS10800	0.65	+0.7
152,478	+		BBR_RS10800	0.68	+0.9
152,487	+		BBR_RS10800	0.69	+0.3
152,492	+		BBR_RS10800	0.70	+0.8
152,495	-		BBR_RS10800	0.70	+1.6
152,499	+		BBR_RS10800	0.70	-0.6
152,502	+		BBR_RS10800	0.71	+0.7
152,502	+		BBR_RS10800	0.71	+0.7
152,510	-		BBR_RS10800	0.71	-1.5
152,510	-		BBR_RS10800	0.71	+0.6
152,512	+		BBR_RS10800	0.72	+1.9
152,512	+		BBR_RS10800	0.72	-0.4
152,512	+		BBR_RS10800	0.72	+0.5
152,512	+		BBR_RS10800	0.72	+0.9
152,512	+		BBR_RS10800	0.72	-1.2
152,512	+		BBR_RS10800	0.72	-1.9
152,512	+		BBR_RS10800	0.72	+0.2
152,512	+		BBR_RS10800	0.72	-0.7
152,515	-		BBR_RS10800	0.72	+0.9
152,520	-		BBR_RS10800	0.72	+0.9
152,520	-		BBR_RS10800	0.72	-0.6
152,523	+		BBR_RS10800	0.73	-1.2
152,523	+		BBR_RS10800	0.73	-0.5
152,523	+		BBR_RS10800	0.73	+1.0
152,523	+		BBR_RS10800	0.73	+0.1
152,523	+		BBR_RS10800	0.73	+0.3
152,531	-		BBR_RS10800	0.73	-1.9
152,531	-		BBR_RS10800	0.73	+0.7
152,534	-		BBR_RS10800	0.74	+0.7
152,535	+		BBR_RS10800	0.74	+0.2
152,535	+		BBR_RS10800	0.74	-0.7
152,535	+		BBR_RS10800	0.74	-0.8
152,536	-		BBR_RS10800	0.74	-1.2
152,540	-		BBR_RS10800	0.74	-1.1
152,542	+		BBR_RS10800	0.74	+0.1
152,542	+		BBR_RS10800	0.74	+1.3
152,543	-		BBR_RS10800	0.75	+0.7
152,543	-		BBR_RS10800	0.75	+0.1
152,550	-		BBR_RS10800	0.75	-2.9
152,552	+		BBR_RS10800	0.75	+2.2
152,562	-		BBR_RS10800	0.76	-0.1
152,567	-		BBR_RS10800	0.77	-2.3
152,578	+		BBR_RS10800	0.78	+0.5
152,582	+		BBR_RS10800	0.78	+1.7
152,582	+		BBR_RS10800	0.78	+0.2
152,582	+		BBR_RS10800	0.78	-1.2
152,582	+		BBR_RS10800	0.78	-1.4
152,582	+		BBR_RS10800	0.78	-1.2
152,586	+		BBR_RS10800	0.79	+0.3
152,588	+		BBR_RS10800	0.79	+1.3
152,590	-		BBR_RS10800	0.79	+0.3
152,605	-		BBR_RS10800	0.80	-2.0
152,611	-		BBR_RS10800	0.81	-2.8
152,624	+		BBR_RS10800	0.82	-0.2
152,624	+		BBR_RS10800	0.82	-2.3
152,624	+		BBR_RS10800	0.82	-0.9
152,624	+		BBR_RS10800	0.82	+0.1
152,624	+		BBR_RS10800	0.82	+1.4
152,629	+		BBR_RS10800	0.83	-0.4
152,632	-		BBR_RS10800	0.83	+0.8
152,632	-		BBR_RS10800	0.83	-2.3
152,693	+		BBR_RS10800	0.89	-2.5
152,693	+		BBR_RS10800	0.89	+1.0
152,693	+		BBR_RS10800	0.89	-0.4
152,693	+		BBR_RS10800	0.89	+0.6
152,693	+		BBR_RS10800	0.89	+1.1
152,693	+		BBR_RS10800	0.89	+0.5
152,693	+		BBR_RS10800	0.89	-1.5
152,693	-		BBR_RS10800	0.89	+0.9
152,699	-		BBR_RS10800	0.89	+0.8
152,701	-		BBR_RS10800	0.90	-2.5
152,701	-		BBR_RS10800	0.90	+1.1
152,707	+				-1.8
152,707	+				+1.0
152,724	+				-2.8
152,724	+				-2.6
152,743	-				-2.8
152,743	-				-0.5
152,748	+				+0.3
152,753	+				+0.8
152,753	+				+0.9
152,761	-				+1.2
152,761	-				-2.1
152,761	-				+0.6
152,766	+				+1.0
152,773	-				-0.8
152,773	-				+1.0
152,776	+				+0.8
152,790	-				-0.7
152,791	+				-1.4
152,791	+				+2.5
152,795	+				+0.9
152,797	-				+0.2
152,799	-				-1.1
152,801	+				+0.4
152,809	-				+0.3
152,809	-				+0.0
152,843	+				-0.5
152,848	+				+0.8
152,848	-				-0.4
152,902	-				+0.4
152,918	+				-0.8
152,918	+				-0.0
152,923	-				+1.1
152,943	+				+0.7
152,957	+				+0.5
153,013	+				-2.5
153,013	+				-1.6
153,031	+				-0.8
153,032	-				-2.0
153,039	-				-1.0
153,043	+				-1.1
153,056	-				+2.0
153,072	+				+1.2
153,123	-				+4.2
153,124	-				+3.9
153,128	+				+3.7
153,129	+				+3.0
153,137	-				+3.4
153,156	+				+3.9
153,161	+				+4.3
153,162	+				+3.1
153,163	-				+4.2
153,207	+		BBR_RS10805	0.13	+3.7
153,207	+		BBR_RS10805	0.13	+3.8
153,215	-		BBR_RS10805	0.13	+3.4
153,240	-		BBR_RS10805	0.16	+3.8
153,250	+		BBR_RS10805	0.17	+3.9
153,250	+		BBR_RS10805	0.17	+3.2
153,310	-		BBR_RS10805	0.23	+3.6
153,325	-		BBR_RS10805	0.24	+3.0
153,336	+		BBR_RS10805	0.25	+4.2
153,346	+		BBR_RS10805	0.26	+3.8
153,366	+		BBR_RS10805	0.28	+3.4
153,368	+		BBR_RS10805	0.29	+4.1
153,368	+		BBR_RS10805	0.29	+3.9
153,368	+		BBR_RS10805	0.29	+3.4
153,368	+		BBR_RS10805	0.29	+3.5
153,376	-		BBR_RS10805	0.29	+3.5
153,376	-		BBR_RS10805	0.29	+3.1
153,406	+		BBR_RS10805	0.32	+3.6
153,411	-		BBR_RS10805	0.33	+3.4
153,424	-		BBR_RS10805	0.34	+3.1
153,425	-		BBR_RS10805	0.34	+3.5
153,447	-		BBR_RS10805	0.37	+2.3
153,453	+		BBR_RS10805	0.37	+4.7
153,461	+		BBR_RS10805	0.38	+3.6
153,463	+		BBR_RS10805	0.38	+3.9
153,464	-		BBR_RS10805	0.38	+3.4
153,480	-		BBR_RS10805	0.40	+2.3
153,491	+		BBR_RS10805	0.41	+3.9
153,517	+		BBR_RS10805	0.43	+4.2
153,517	+		BBR_RS10805	0.43	+3.4
153,524	-		BBR_RS10805	0.44	+3.5
153,524	-		BBR_RS10805	0.44	+3.4
153,525	-		BBR_RS10805	0.44	+4.3
153,527	+		BBR_RS10805	0.44	+2.6
153,585	+		BBR_RS10805	0.50	+3.7
153,597	+		BBR_RS10805	0.51	+3.8
153,600	-		BBR_RS10805	0.52	+3.3
153,605	-		BBR_RS10805	0.52	+3.4
153,631	-		BBR_RS10805	0.55	+4.3
153,631	-		BBR_RS10805	0.55	+3.2
153,669	+		BBR_RS10805	0.59	+3.4
153,669	+		BBR_RS10805	0.59	+3.2
153,677	-		BBR_RS10805	0.59	+4.0
153,677	-		BBR_RS10805	0.59	+4.0
153,683	+		BBR_RS10805	0.60	+3.5
153,683	+		BBR_RS10805	0.60	+3.1
153,683	+		BBR_RS10805	0.60	+3.4
153,684	+		BBR_RS10805	0.60	+3.2
153,684	+		BBR_RS10805	0.60	+3.3
153,684	+		BBR_RS10805	0.60	+4.0
153,684	+		BBR_RS10805	0.60	+3.1
153,691	-		BBR_RS10805	0.61	+2.3
153,701	-		BBR_RS10805	0.62	+3.6
153,702	+		BBR_RS10805	0.62	+2.9
153,702	+		BBR_RS10805	0.62	+3.2
153,710	-		BBR_RS10805	0.63	+3.6
153,736	+		BBR_RS10805	0.65	+3.6
153,744	-		BBR_RS10805	0.66	+3.9
153,750	+		BBR_RS10805	0.67	+3.7
153,750	+		BBR_RS10805	0.67	+3.3
153,753	-		BBR_RS10805	0.67	+3.8
153,760	+		BBR_RS10805	0.68	+3.7
153,765	+		BBR_RS10805	0.68	+2.9
153,765	+		BBR_RS10805	0.68	+3.7
153,765	+		BBR_RS10805	0.68	+4.3
153,765	+		BBR_RS10805	0.68	+3.6
153,765	+		BBR_RS10805	0.68	+3.7
153,773	-		BBR_RS10805	0.69	+2.7
153,776	+		BBR_RS10805	0.69	+3.7
153,798	+		BBR_RS10805	0.71	+3.6
153,806	-		BBR_RS10805	0.72	+3.9
153,816	-		BBR_RS10805	0.73	+3.3
153,862	+		BBR_RS10805	0.78	+3.8
153,876	-		BBR_RS10805	0.79	+2.2
153,883	+		BBR_RS10805	0.80	+3.9
153,899	-		BBR_RS10805	0.81	+3.1
153,923	-		BBR_RS10805	0.84	+2.8
153,954	+		BBR_RS10805	0.87	+2.9
153,964	+		BBR_RS10805	0.88	+4.0
153,975	+		BBR_RS10805	0.89	+4.0
153,975	+		BBR_RS10805	0.89	+3.3
153,978	-		BBR_RS10805	0.89	+2.9
153,983	-		BBR_RS10805	0.90	+3.5
153,993	-				+3.2
153,998	+				+2.9
154,003	+				+3.8
154,027	+				+3.9
154,027	+				+3.5
154,027	+				+3.9
154,045	+				+3.6
154,045	+				+4.1
154,045	+				+2.7
154,053	-				+3.1
154,053	-				+4.0
154,063	+				+3.8
154,079	+				+1.1
154,092	+				-0.2
154,094	-				+0.6
154,100	-				+1.1
154,272	+				+1.3
154,272	+				+1.2
154,280	-				-2.7
154,280	-				-0.3
154,285	+				-2.5
154,315	+				+1.1
154,316	-				-0.5
154,318	-				+1.2
154,320	+				+0.3
154,328	+				+1.0
154,328	+				+1.6
154,340	+				+0.2
154,399	-		BBR_RS10810	0.10	-2.3
154,406	-		BBR_RS10810	0.11	+0.7
154,416	+		BBR_RS10810	0.12	+0.2
154,419	-		BBR_RS10810	0.12	-1.2
154,435	-		BBR_RS10810	0.13	+0.9
154,443	+		BBR_RS10810	0.14	-1.6
154,443	+		BBR_RS10810	0.14	-0.5
154,443	+		BBR_RS10810	0.14	+0.4
154,508	-		BBR_RS10810	0.19	-2.9
154,519	-		BBR_RS10810	0.19	-0.5
154,525	-		BBR_RS10810	0.20	+2.2
154,540	-		BBR_RS10810	0.21	+1.2
154,566	+		BBR_RS10810	0.23	-2.6
154,591	-		BBR_RS10810	0.25	-0.2
154,597	+		BBR_RS10810	0.25	+1.0
154,597	+		BBR_RS10810	0.25	+0.9
154,600	-		BBR_RS10810	0.26	-1.6
154,634	+		BBR_RS10810	0.28	+0.3
154,634	+		BBR_RS10810	0.28	-0.5
154,634	+		BBR_RS10810	0.28	-0.2
154,634	+		BBR_RS10810	0.28	-0.2
154,634	+		BBR_RS10810	0.28	+0.0
154,634	+		BBR_RS10810	0.28	+1.3
154,634	-		BBR_RS10810	0.28	+1.2
154,639	+		BBR_RS10810	0.29	-1.1
154,642	-		BBR_RS10810	0.29	+2.3
154,642	-		BBR_RS10810	0.29	+1.1
154,642	-		BBR_RS10810	0.29	+1.5
154,642	-		BBR_RS10810	0.29	+0.6
154,642	-		BBR_RS10810	0.29	+0.2
154,642	-		BBR_RS10810	0.29	-1.4
154,660	+		BBR_RS10810	0.30	+1.8
154,660	+		BBR_RS10810	0.30	+0.3
154,693	+		BBR_RS10810	0.33	-1.2
154,696	-		BBR_RS10810	0.33	-2.6
154,701	-		BBR_RS10810	0.33	-1.4
154,718	+		BBR_RS10810	0.35	-0.5
154,718	+		BBR_RS10810	0.35	-0.7
154,718	+		BBR_RS10810	0.35	+0.9
154,726	-		BBR_RS10810	0.35	+0.6
154,726	-		BBR_RS10810	0.35	-0.3
154,726	-		BBR_RS10810	0.35	-0.7
154,726	-		BBR_RS10810	0.35	+1.1
154,734	+		BBR_RS10810	0.36	+0.2
154,744	+		BBR_RS10810	0.37	+0.0
154,752	+		BBR_RS10810	0.37	+0.0
154,775	+		BBR_RS10810	0.39	+0.0
154,775	+		BBR_RS10810	0.39	+0.7
154,782	+		BBR_RS10810	0.40	+1.8
154,783	-		BBR_RS10810	0.40	-0.5
154,783	-		BBR_RS10810	0.40	+0.2
154,810	+		BBR_RS10810	0.42	+0.2
154,843	+		BBR_RS10810	0.44	-0.1
154,843	+		BBR_RS10810	0.44	+0.7
154,843	-		BBR_RS10810	0.44	+0.5
154,851	-		BBR_RS10810	0.45	+0.7
154,851	-		BBR_RS10810	0.45	+0.6
154,851	-		BBR_RS10810	0.45	+1.4
154,851	-		BBR_RS10810	0.45	-1.2
154,851	-		BBR_RS10810	0.45	+1.1
154,854	+		BBR_RS10810	0.45	-2.2
154,860	+		BBR_RS10810	0.45	+0.1
154,867	-		BBR_RS10810	0.46	+1.4
154,877	+		BBR_RS10810	0.47	+1.0
154,887	+		BBR_RS10810	0.48	-0.6
154,887	+		BBR_RS10810	0.48	-1.2
154,895	+		BBR_RS10810	0.48	-1.2
154,913	-		BBR_RS10810	0.50	-2.3
154,938	+		BBR_RS10810	0.51	-1.9
154,959	+		BBR_RS10810	0.53	-2.4
154,959	+		BBR_RS10810	0.53	+0.9
154,959	+		BBR_RS10810	0.53	+0.0
154,967	-		BBR_RS10810	0.54	+0.3
154,972	-		BBR_RS10810	0.54	+2.6
155,018	+		BBR_RS10810	0.58	-1.1
155,018	+		BBR_RS10810	0.58	+1.1
155,028	+		BBR_RS10810	0.58	-0.1
155,028	+		BBR_RS10810	0.58	+1.2
155,034	+		BBR_RS10810	0.59	-2.8
155,034	+		BBR_RS10810	0.59	+0.8
155,042	+		BBR_RS10810	0.59	-0.5
155,044	+		BBR_RS10810	0.60	-1.9
155,047	-		BBR_RS10810	0.60	-1.0
155,052	-		BBR_RS10810	0.60	+1.1
155,052	-		BBR_RS10810	0.60	-0.5
155,073	+		BBR_RS10810	0.62	-0.3
155,078	+		BBR_RS10810	0.62	+0.8
155,078	+		BBR_RS10810	0.62	+0.2
155,084	+		BBR_RS10810	0.63	+1.8