Experiment: MoYLS4 media with N2 no edta
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2877 and DvMF_2878 are separated by 3 nucleotides DvMF_2878 and DvMF_2879 are separated by 54 nucleotides DvMF_2879 and DvMF_2880 are separated by 97 nucleotides DvMF_2880 and DvMF_2881 overlap by 59 nucleotides
DvMF_2877: DvMF_2877 - phosphoenolpyruvate-protein phosphotransferase (RefSeq), at 3,634,888 to 3,636,663
_2877
DvMF_2878: DvMF_2878 - Phosphotransferase system, phosphocarrier protein HPr (RefSeq), at 3,636,667 to 3,636,963
_2878
DvMF_2879: DvMF_2879 - PTS system mannose/fructose/sorbose family IID component (RefSeq), at 3,637,018 to 3,637,797
_2879
DvMF_2880: DvMF_2880 - Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase (RefSeq), at 3,637,895 to 3,638,734
_2880
DvMF_2881: DvMF_2881 - protein of unknown function UPF0102 (RefSeq), at 3,638,676 to 3,639,116
_2881
Position (kb)
3637
3638 Strain fitness (log2 ratio)
-1
0
1
2 at 3636.061 kb on - strand, within DvMF_2877 at 3636.144 kb on + strand, within DvMF_2877 at 3636.152 kb on - strand, within DvMF_2877 at 3636.177 kb on - strand, within DvMF_2877 at 3636.195 kb on + strand, within DvMF_2877 at 3636.203 kb on - strand, within DvMF_2877 at 3636.212 kb on + strand, within DvMF_2877 at 3636.467 kb on - strand, within DvMF_2877 at 3636.527 kb on - strand at 3636.664 kb on + strand at 3636.664 kb on + strand at 3636.918 kb on + strand, within DvMF_2878 at 3636.926 kb on - strand, within DvMF_2878 at 3637.052 kb on + strand at 3637.321 kb on + strand, within DvMF_2879 at 3637.421 kb on + strand, within DvMF_2879 at 3637.444 kb on + strand, within DvMF_2879 at 3637.479 kb on + strand, within DvMF_2879 at 3637.900 kb on - strand at 3638.184 kb on + strand, within DvMF_2880 at 3638.188 kb on + strand, within DvMF_2880 at 3638.217 kb on + strand, within DvMF_2880 at 3638.274 kb on - strand, within DvMF_2880 at 3638.368 kb on - strand, within DvMF_2880 at 3638.378 kb on - strand, within DvMF_2880 at 3638.413 kb on + strand, within DvMF_2880 at 3638.546 kb on - strand, within DvMF_2880 at 3638.707 kb on + strand at 3638.740 kb on - strand, within DvMF_2881 at 3638.766 kb on + strand, within DvMF_2881
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 media with N2 no edta remove 3,636,061 - DvMF_2877 0.66 +0.6 3,636,144 + DvMF_2877 0.71 +1.0 3,636,152 - DvMF_2877 0.71 +0.6 3,636,177 - DvMF_2877 0.73 +0.7 3,636,195 + DvMF_2877 0.74 +0.8 3,636,203 - DvMF_2877 0.74 +0.7 3,636,212 + DvMF_2877 0.75 +1.4 3,636,467 - DvMF_2877 0.89 +0.7 3,636,527 - +0.6 3,636,664 + +0.6 3,636,664 + +0.7 3,636,918 + DvMF_2878 0.85 +1.8 3,636,926 - DvMF_2878 0.87 +1.7 3,637,052 + -1.1 3,637,321 + DvMF_2879 0.39 -0.6 3,637,421 + DvMF_2879 0.52 -0.7 3,637,444 + DvMF_2879 0.55 -0.0 3,637,479 + DvMF_2879 0.59 +0.0 3,637,900 - -1.3 3,638,184 + DvMF_2880 0.34 -0.4 3,638,188 + DvMF_2880 0.35 -0.3 3,638,217 + DvMF_2880 0.38 -0.3 3,638,274 - DvMF_2880 0.45 -0.7 3,638,368 - DvMF_2880 0.56 -0.5 3,638,378 - DvMF_2880 0.57 -0.1 3,638,413 + DvMF_2880 0.62 -0.4 3,638,546 - DvMF_2880 0.78 -0.1 3,638,707 + -0.6 3,638,740 - DvMF_2881 0.15 -0.3 3,638,766 + DvMF_2881 0.20 -0.5
Or see this region's nucleotide sequence