Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2800

Experiment: MoYLS4 media with N2 no edta

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2798 and DvMF_2799 are separated by 315 nucleotidesDvMF_2799 and DvMF_2800 are separated by 155 nucleotidesDvMF_2800 and DvMF_2801 overlap by 4 nucleotides DvMF_2798: DvMF_2798 - transcription activator effector binding (RefSeq), at 3,542,109 to 3,542,579 _2798 DvMF_2799: DvMF_2799 - histone family protein DNA-binding protein (RefSeq), at 3,542,895 to 3,543,170 _2799 DvMF_2800: DvMF_2800 - hypothetical protein (RefSeq), at 3,543,326 to 3,543,733 _2800 DvMF_2801: DvMF_2801 - Hydroxypyruvate reductase (RefSeq), at 3,543,730 to 3,545,088 _2801 Position (kb) 3543 3544Strain fitness (log2 ratio) -1 0 1at 3542.600 kb on - strandat 3542.788 kb on + strandat 3542.830 kb on - strandat 3543.043 kb on + strand, within DvMF_2799at 3543.361 kb on - strandat 3543.383 kb on + strand, within DvMF_2800at 3543.435 kb on + strand, within DvMF_2800at 3543.440 kb on + strand, within DvMF_2800at 3543.677 kb on - strand, within DvMF_2800at 3543.677 kb on - strand, within DvMF_2800at 3543.798 kb on - strandat 3543.803 kb on - strandat 3543.927 kb on - strand, within DvMF_2801at 3544.290 kb on - strand, within DvMF_2801at 3544.344 kb on + strand, within DvMF_2801at 3544.436 kb on - strand, within DvMF_2801at 3544.558 kb on + strand, within DvMF_2801at 3544.670 kb on - strand, within DvMF_2801

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 media with N2 no edta
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3,542,600 - -0.3
3,542,788 + +0.7
3,542,830 - +0.4
3,543,043 + DvMF_2799 0.54 +0.5
3,543,361 - -1.7
3,543,383 + DvMF_2800 0.14 +0.1
3,543,435 + DvMF_2800 0.27 +0.3
3,543,440 + DvMF_2800 0.28 -0.2
3,543,677 - DvMF_2800 0.86 -0.0
3,543,677 - DvMF_2800 0.86 -0.6
3,543,798 - -0.6
3,543,803 - -0.5
3,543,927 - DvMF_2801 0.14 -0.3
3,544,290 - DvMF_2801 0.41 -0.6
3,544,344 + DvMF_2801 0.45 -1.3
3,544,436 - DvMF_2801 0.52 -0.1
3,544,558 + DvMF_2801 0.61 -0.1
3,544,670 - DvMF_2801 0.69 -0.3

Or see this region's nucleotide sequence