Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2728

Experiment: MoYLS4 media with N2 no edta

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_2727 and DvMF_2728 are separated by 45 nucleotidesDvMF_2728 and DvMF_2729 are separated by 79 nucleotidesDvMF_2729 and DvMF_2730 are separated by 91 nucleotides DvMF_2727: DvMF_2727 - Recombinase (RefSeq), at 3,450,826 to 3,452,598 _2727 DvMF_2728: DvMF_2728 - magnesium chelatase ChlI subunit (RefSeq), at 3,452,644 to 3,453,618 _2728 DvMF_2729: DvMF_2729 - hypothetical protein (RefSeq), at 3,453,698 to 3,454,342 _2729 DvMF_2730: DvMF_2730 - hypothetical protein (RefSeq), at 3,454,434 to 3,454,952 _2730 Position (kb) 3452 3453 3454Strain fitness (log2 ratio) -2 -1 0 1at 3451.685 kb on + strand, within DvMF_2727at 3451.806 kb on + strand, within DvMF_2727at 3451.813 kb on + strand, within DvMF_2727at 3452.003 kb on + strand, within DvMF_2727at 3452.003 kb on + strand, within DvMF_2727at 3452.003 kb on + strand, within DvMF_2727at 3452.011 kb on - strand, within DvMF_2727at 3452.328 kb on + strand, within DvMF_2727at 3452.455 kb on + strandat 3452.469 kb on - strandat 3452.497 kb on - strandat 3452.518 kb on - strandat 3452.534 kb on - strandat 3452.600 kb on + strandat 3452.814 kb on + strand, within DvMF_2728at 3452.814 kb on + strand, within DvMF_2728at 3453.289 kb on - strand, within DvMF_2728at 3453.388 kb on - strand, within DvMF_2728at 3453.558 kb on - strandat 3453.588 kb on - strandat 3453.625 kb on + strandat 3453.633 kb on - strandat 3453.759 kb on - strandat 3453.807 kb on - strand, within DvMF_2729at 3454.031 kb on + strand, within DvMF_2729at 3454.044 kb on - strand, within DvMF_2729at 3454.062 kb on + strand, within DvMF_2729at 3454.062 kb on + strand, within DvMF_2729at 3454.118 kb on + strand, within DvMF_2729at 3454.126 kb on - strand, within DvMF_2729at 3454.300 kb on + strandat 3454.319 kb on + strandat 3454.340 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 media with N2 no edta
remove
3,451,685 + DvMF_2727 0.48 -2.1
3,451,806 + DvMF_2727 0.55 -0.6
3,451,813 + DvMF_2727 0.56 -1.1
3,452,003 + DvMF_2727 0.66 -0.5
3,452,003 + DvMF_2727 0.66 -1.0
3,452,003 + DvMF_2727 0.66 -0.3
3,452,011 - DvMF_2727 0.67 -0.4
3,452,328 + DvMF_2727 0.85 -0.3
3,452,455 + -0.2
3,452,469 - -0.2
3,452,497 - -0.4
3,452,518 - +1.0
3,452,534 - -0.5
3,452,600 + -0.4
3,452,814 + DvMF_2728 0.17 +0.2
3,452,814 + DvMF_2728 0.17 +0.6
3,453,289 - DvMF_2728 0.66 +0.2
3,453,388 - DvMF_2728 0.76 -0.3
3,453,558 - -0.7
3,453,588 - -0.1
3,453,625 + -0.0
3,453,633 - -0.0
3,453,759 - -0.2
3,453,807 - DvMF_2729 0.17 -1.2
3,454,031 + DvMF_2729 0.52 -0.1
3,454,044 - DvMF_2729 0.54 -0.4
3,454,062 + DvMF_2729 0.56 +0.4
3,454,062 + DvMF_2729 0.56 -0.5
3,454,118 + DvMF_2729 0.65 -0.3
3,454,126 - DvMF_2729 0.66 -0.8
3,454,300 + -0.4
3,454,319 + -0.7
3,454,340 - -0.6

Or see this region's nucleotide sequence