Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2677

Experiment: MoYLS4 media with N2 no edta

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2676 and DvMF_2677 are separated by 321 nucleotidesDvMF_2677 and DvMF_2678 are separated by 342 nucleotides DvMF_2676: DvMF_2676 - putative phage repressor (RefSeq), at 3,379,339 to 3,380,034 _2676 DvMF_2677: DvMF_2677 - response regulator receiver sensor hybrid histidine kinase (RefSeq), at 3,380,356 to 3,382,266 _2677 DvMF_2678: DvMF_2678 - PAS/PAC sensor signal transduction histidine kinase (RefSeq), at 3,382,609 to 3,384,705 _2678 Position (kb) 3380 3381 3382 3383Strain fitness (log2 ratio) -2 -1 0 1at 3379.414 kb on + strand, within DvMF_2676at 3379.553 kb on + strand, within DvMF_2676at 3379.558 kb on + strand, within DvMF_2676at 3380.086 kb on - strandat 3380.341 kb on - strandat 3380.358 kb on - strandat 3380.447 kb on + strandat 3380.743 kb on + strand, within DvMF_2677at 3380.818 kb on + strand, within DvMF_2677at 3380.922 kb on + strand, within DvMF_2677at 3380.972 kb on - strand, within DvMF_2677at 3380.972 kb on - strand, within DvMF_2677at 3381.055 kb on - strand, within DvMF_2677at 3381.105 kb on - strand, within DvMF_2677at 3381.248 kb on + strand, within DvMF_2677at 3381.256 kb on - strand, within DvMF_2677at 3381.299 kb on + strand, within DvMF_2677at 3381.311 kb on - strand, within DvMF_2677at 3381.345 kb on - strand, within DvMF_2677at 3381.649 kb on - strand, within DvMF_2677at 3381.664 kb on + strand, within DvMF_2677at 3382.041 kb on + strand, within DvMF_2677at 3382.105 kb on - strandat 3382.115 kb on - strandat 3382.159 kb on - strandat 3382.263 kb on - strandat 3382.268 kb on - strandat 3382.706 kb on + strandat 3382.782 kb on - strandat 3382.943 kb on + strand, within DvMF_2678at 3382.943 kb on + strand, within DvMF_2678at 3383.029 kb on + strand, within DvMF_2678at 3383.099 kb on + strand, within DvMF_2678at 3383.156 kb on + strand, within DvMF_2678at 3383.266 kb on + strand, within DvMF_2678

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 media with N2 no edta
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3,379,414 + DvMF_2676 0.11 -1.7
3,379,553 + DvMF_2676 0.31 -1.9
3,379,558 + DvMF_2676 0.31 -1.5
3,380,086 - -0.7
3,380,341 - -0.3
3,380,358 - -0.3
3,380,447 + +0.3
3,380,743 + DvMF_2677 0.20 -0.2
3,380,818 + DvMF_2677 0.24 -0.4
3,380,922 + DvMF_2677 0.30 +0.8
3,380,972 - DvMF_2677 0.32 +0.1
3,380,972 - DvMF_2677 0.32 +1.0
3,381,055 - DvMF_2677 0.37 -1.1
3,381,105 - DvMF_2677 0.39 +0.0
3,381,248 + DvMF_2677 0.47 -0.1
3,381,256 - DvMF_2677 0.47 -0.1
3,381,299 + DvMF_2677 0.49 -0.2
3,381,311 - DvMF_2677 0.50 +0.6
3,381,345 - DvMF_2677 0.52 -0.2
3,381,649 - DvMF_2677 0.68 -0.3
3,381,664 + DvMF_2677 0.68 +0.1
3,382,041 + DvMF_2677 0.88 +1.5
3,382,105 - +0.3
3,382,115 - -0.6
3,382,159 - -0.0
3,382,263 - +0.2
3,382,268 - +0.0
3,382,706 + -0.3
3,382,782 - -0.3
3,382,943 + DvMF_2678 0.16 -0.3
3,382,943 + DvMF_2678 0.16 -0.4
3,383,029 + DvMF_2678 0.20 -0.4
3,383,099 + DvMF_2678 0.23 +0.0
3,383,156 + DvMF_2678 0.26 +0.0
3,383,266 + DvMF_2678 0.31 -0.0

Or see this region's nucleotide sequence