Experiment: MoYLS4 media with N2 no edta
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2676 and DvMF_2677 are separated by 321 nucleotides DvMF_2677 and DvMF_2678 are separated by 342 nucleotides
DvMF_2676: DvMF_2676 - putative phage repressor (RefSeq), at 3,379,339 to 3,380,034
_2676
DvMF_2677: DvMF_2677 - response regulator receiver sensor hybrid histidine kinase (RefSeq), at 3,380,356 to 3,382,266
_2677
DvMF_2678: DvMF_2678 - PAS/PAC sensor signal transduction histidine kinase (RefSeq), at 3,382,609 to 3,384,705
_2678
Position (kb)
3380
3381
3382
3383 Strain fitness (log2 ratio)
-2
-1
0
1 at 3379.414 kb on + strand, within DvMF_2676 at 3379.553 kb on + strand, within DvMF_2676 at 3379.558 kb on + strand, within DvMF_2676 at 3380.086 kb on - strand at 3380.341 kb on - strand at 3380.358 kb on - strand at 3380.447 kb on + strand at 3380.743 kb on + strand, within DvMF_2677 at 3380.818 kb on + strand, within DvMF_2677 at 3380.922 kb on + strand, within DvMF_2677 at 3380.972 kb on - strand, within DvMF_2677 at 3380.972 kb on - strand, within DvMF_2677 at 3381.055 kb on - strand, within DvMF_2677 at 3381.105 kb on - strand, within DvMF_2677 at 3381.248 kb on + strand, within DvMF_2677 at 3381.256 kb on - strand, within DvMF_2677 at 3381.299 kb on + strand, within DvMF_2677 at 3381.311 kb on - strand, within DvMF_2677 at 3381.345 kb on - strand, within DvMF_2677 at 3381.649 kb on - strand, within DvMF_2677 at 3381.664 kb on + strand, within DvMF_2677 at 3382.041 kb on + strand, within DvMF_2677 at 3382.105 kb on - strand at 3382.115 kb on - strand at 3382.159 kb on - strand at 3382.263 kb on - strand at 3382.268 kb on - strand at 3382.706 kb on + strand at 3382.782 kb on - strand at 3382.943 kb on + strand, within DvMF_2678 at 3382.943 kb on + strand, within DvMF_2678 at 3383.029 kb on + strand, within DvMF_2678 at 3383.099 kb on + strand, within DvMF_2678 at 3383.156 kb on + strand, within DvMF_2678 at 3383.266 kb on + strand, within DvMF_2678
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 media with N2 no edta remove 3,379,414 + DvMF_2676 0.11 -1.7 3,379,553 + DvMF_2676 0.31 -1.9 3,379,558 + DvMF_2676 0.31 -1.5 3,380,086 - -0.7 3,380,341 - -0.3 3,380,358 - -0.3 3,380,447 + +0.3 3,380,743 + DvMF_2677 0.20 -0.2 3,380,818 + DvMF_2677 0.24 -0.4 3,380,922 + DvMF_2677 0.30 +0.8 3,380,972 - DvMF_2677 0.32 +0.1 3,380,972 - DvMF_2677 0.32 +1.0 3,381,055 - DvMF_2677 0.37 -1.1 3,381,105 - DvMF_2677 0.39 +0.0 3,381,248 + DvMF_2677 0.47 -0.1 3,381,256 - DvMF_2677 0.47 -0.1 3,381,299 + DvMF_2677 0.49 -0.2 3,381,311 - DvMF_2677 0.50 +0.6 3,381,345 - DvMF_2677 0.52 -0.2 3,381,649 - DvMF_2677 0.68 -0.3 3,381,664 + DvMF_2677 0.68 +0.1 3,382,041 + DvMF_2677 0.88 +1.5 3,382,105 - +0.3 3,382,115 - -0.6 3,382,159 - -0.0 3,382,263 - +0.2 3,382,268 - +0.0 3,382,706 + -0.3 3,382,782 - -0.3 3,382,943 + DvMF_2678 0.16 -0.3 3,382,943 + DvMF_2678 0.16 -0.4 3,383,029 + DvMF_2678 0.20 -0.4 3,383,099 + DvMF_2678 0.23 +0.0 3,383,156 + DvMF_2678 0.26 +0.0 3,383,266 + DvMF_2678 0.31 -0.0
Or see this region's nucleotide sequence