Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2622

Experiment: MoYLS4 media with N2 no edta

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2621 and DvMF_2622 are separated by 17 nucleotidesDvMF_2622 and DvMF_2623 are separated by 256 nucleotides DvMF_2621: DvMF_2621 - Nitrogenase (RefSeq), at 3,310,801 to 3,312,417 _2621 DvMF_2622: DvMF_2622 - nitrogenase cofactor biosynthesis protein NifB (RefSeq), at 3,312,435 to 3,313,718 _2622 DvMF_2623: DvMF_2623 - Rhodanese domain protein (RefSeq), at 3,313,975 to 3,314,430 _2623 Position (kb) 3312 3313 3314Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3311.467 kb on + strand, within DvMF_2621at 3311.477 kb on + strand, within DvMF_2621at 3311.485 kb on - strand, within DvMF_2621at 3311.585 kb on + strand, within DvMF_2621at 3311.585 kb on + strand, within DvMF_2621at 3311.594 kb on + strand, within DvMF_2621at 3311.627 kb on + strand, within DvMF_2621at 3311.842 kb on - strand, within DvMF_2621at 3311.864 kb on - strand, within DvMF_2621at 3311.926 kb on - strand, within DvMF_2621at 3312.283 kb on + strandat 3312.400 kb on + strandat 3312.591 kb on + strand, within DvMF_2622at 3312.591 kb on + strand, within DvMF_2622at 3312.892 kb on - strand, within DvMF_2622at 3312.976 kb on + strand, within DvMF_2622at 3312.976 kb on + strand, within DvMF_2622at 3312.976 kb on + strand, within DvMF_2622at 3312.976 kb on + strand, within DvMF_2622at 3312.984 kb on - strand, within DvMF_2622at 3313.004 kb on + strand, within DvMF_2622at 3313.082 kb on - strand, within DvMF_2622at 3313.415 kb on - strand, within DvMF_2622at 3313.439 kb on - strand, within DvMF_2622at 3313.486 kb on + strand, within DvMF_2622at 3313.486 kb on + strand, within DvMF_2622at 3313.494 kb on - strand, within DvMF_2622at 3314.042 kb on - strand, within DvMF_2623at 3314.335 kb on + strand, within DvMF_2623at 3314.478 kb on - strandat 3314.547 kb on - strandat 3314.547 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 media with N2 no edta
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3,311,467 + DvMF_2621 0.41 -2.0
3,311,477 + DvMF_2621 0.42 -2.7
3,311,485 - DvMF_2621 0.42 -2.6
3,311,585 + DvMF_2621 0.48 -1.9
3,311,585 + DvMF_2621 0.48 -2.3
3,311,594 + DvMF_2621 0.49 -2.3
3,311,627 + DvMF_2621 0.51 -2.5
3,311,842 - DvMF_2621 0.64 -2.2
3,311,864 - DvMF_2621 0.66 -2.7
3,311,926 - DvMF_2621 0.70 -2.6
3,312,283 + -3.7
3,312,400 + -2.4
3,312,591 + DvMF_2622 0.12 -2.2
3,312,591 + DvMF_2622 0.12 -2.1
3,312,892 - DvMF_2622 0.36 -2.0
3,312,976 + DvMF_2622 0.42 -2.3
3,312,976 + DvMF_2622 0.42 -3.3
3,312,976 + DvMF_2622 0.42 -2.4
3,312,976 + DvMF_2622 0.42 -1.7
3,312,984 - DvMF_2622 0.43 -2.9
3,313,004 + DvMF_2622 0.44 -2.8
3,313,082 - DvMF_2622 0.50 -2.3
3,313,415 - DvMF_2622 0.76 -2.7
3,313,439 - DvMF_2622 0.78 -2.9
3,313,486 + DvMF_2622 0.82 -3.9
3,313,486 + DvMF_2622 0.82 -3.0
3,313,494 - DvMF_2622 0.82 -2.9
3,314,042 - DvMF_2623 0.15 -0.5
3,314,335 + DvMF_2623 0.79 -0.4
3,314,478 - -0.5
3,314,547 - -0.1
3,314,547 - -0.1

Or see this region's nucleotide sequence