Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2149

Experiment: MoYLS4 media with N2 no edta

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2148 and DvMF_2149 overlap by 4 nucleotidesDvMF_2149 and DvMF_2150 are separated by 175 nucleotides DvMF_2148: DvMF_2148 - multi-sensor signal transduction histidine kinase (RefSeq), at 2,675,567 to 2,677,756 _2148 DvMF_2149: DvMF_2149 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 2,677,753 to 2,679,186 _2149 DvMF_2150: DvMF_2150 - glycosyl transferase family 2 (RefSeq), at 2,679,362 to 2,680,270 _2150 Position (kb) 2677 2678 2679 2680Strain fitness (log2 ratio) -1 0 1 2 3 4at 2676.754 kb on - strand, within DvMF_2148at 2676.840 kb on + strand, within DvMF_2148at 2676.957 kb on - strand, within DvMF_2148at 2677.334 kb on - strand, within DvMF_2148at 2677.467 kb on + strand, within DvMF_2148at 2677.594 kb on - strandat 2677.669 kb on + strandat 2677.712 kb on + strandat 2677.712 kb on + strandat 2677.804 kb on + strandat 2677.832 kb on - strandat 2678.023 kb on + strand, within DvMF_2149at 2678.088 kb on - strand, within DvMF_2149at 2678.101 kb on - strand, within DvMF_2149at 2678.218 kb on + strand, within DvMF_2149at 2678.554 kb on - strand, within DvMF_2149at 2678.821 kb on - strand, within DvMF_2149at 2679.020 kb on + strand, within DvMF_2149at 2679.463 kb on - strand, within DvMF_2150at 2679.495 kb on + strand, within DvMF_2150at 2679.503 kb on - strand, within DvMF_2150at 2679.847 kb on + strand, within DvMF_2150at 2679.984 kb on + strand, within DvMF_2150

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 media with N2 no edta
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2,676,754 - DvMF_2148 0.54 +0.6
2,676,840 + DvMF_2148 0.58 +1.2
2,676,957 - DvMF_2148 0.63 +1.5
2,677,334 - DvMF_2148 0.81 +0.8
2,677,467 + DvMF_2148 0.87 +1.3
2,677,594 - +4.2
2,677,669 + +1.5
2,677,712 + +1.0
2,677,712 + +3.8
2,677,804 + -0.4
2,677,832 - +0.5
2,678,023 + DvMF_2149 0.19 +0.9
2,678,088 - DvMF_2149 0.23 +1.2
2,678,101 - DvMF_2149 0.24 +0.7
2,678,218 + DvMF_2149 0.32 +0.5
2,678,554 - DvMF_2149 0.56 +0.4
2,678,821 - DvMF_2149 0.74 +0.2
2,679,020 + DvMF_2149 0.88 +0.5
2,679,463 - DvMF_2150 0.11 -0.6
2,679,495 + DvMF_2150 0.15 -1.0
2,679,503 - DvMF_2150 0.16 -0.5
2,679,847 + DvMF_2150 0.53 -0.6
2,679,984 + DvMF_2150 0.68 -0.2

Or see this region's nucleotide sequence