Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1606

Experiment: MoYLS4 media with N2 no edta

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1605 and DvMF_1606 are separated by 223 nucleotidesDvMF_1606 and DvMF_1607 are separated by 144 nucleotidesDvMF_1607 and DvMF_1608 overlap by 13 nucleotides DvMF_1605: DvMF_1605 - NADH dehydrogenase (quinone) (RefSeq), at 1,976,518 to 1,977,945 _1605 DvMF_1606: DvMF_1606 - hypothetical protein (RefSeq), at 1,978,169 to 1,979,344 _1606 DvMF_1607: DvMF_1607 - two component transcriptional regulator, LuxR family (RefSeq), at 1,979,489 to 1,980,199 _1607 DvMF_1608: DvMF_1608 - histidine kinase (RefSeq), at 1,980,187 to 1,981,884 _1608 Position (kb) 1978 1979 1980Strain fitness (log2 ratio) -2 -1 0 1at 1977.188 kb on + strand, within DvMF_1605at 1977.421 kb on + strand, within DvMF_1605at 1977.436 kb on + strand, within DvMF_1605at 1977.454 kb on + strand, within DvMF_1605at 1977.489 kb on + strand, within DvMF_1605at 1977.562 kb on - strand, within DvMF_1605at 1977.634 kb on - strand, within DvMF_1605at 1977.730 kb on + strand, within DvMF_1605at 1977.730 kb on + strand, within DvMF_1605at 1977.730 kb on + strand, within DvMF_1605at 1977.733 kb on - strand, within DvMF_1605at 1977.738 kb on - strand, within DvMF_1605at 1977.738 kb on - strand, within DvMF_1605at 1977.738 kb on - strand, within DvMF_1605at 1978.318 kb on - strand, within DvMF_1606at 1978.530 kb on + strand, within DvMF_1606at 1978.546 kb on - strand, within DvMF_1606at 1978.574 kb on - strand, within DvMF_1606at 1978.811 kb on - strand, within DvMF_1606at 1978.895 kb on + strand, within DvMF_1606at 1978.929 kb on - strand, within DvMF_1606at 1979.023 kb on + strand, within DvMF_1606at 1979.046 kb on + strand, within DvMF_1606at 1979.377 kb on - strandat 1979.789 kb on + strand, within DvMF_1607at 1979.876 kb on + strand, within DvMF_1607at 1980.336 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 media with N2 no edta
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1,977,188 + DvMF_1605 0.47 -0.8
1,977,421 + DvMF_1605 0.63 -0.3
1,977,436 + DvMF_1605 0.64 -0.4
1,977,454 + DvMF_1605 0.66 +0.6
1,977,489 + DvMF_1605 0.68 -1.5
1,977,562 - DvMF_1605 0.73 -1.1
1,977,634 - DvMF_1605 0.78 -0.6
1,977,730 + DvMF_1605 0.85 -0.5
1,977,730 + DvMF_1605 0.85 -2.6
1,977,730 + DvMF_1605 0.85 -0.0
1,977,733 - DvMF_1605 0.85 -1.3
1,977,738 - DvMF_1605 0.85 +1.0
1,977,738 - DvMF_1605 0.85 -0.7
1,977,738 - DvMF_1605 0.85 +0.1
1,978,318 - DvMF_1606 0.13 -0.8
1,978,530 + DvMF_1606 0.31 -0.3
1,978,546 - DvMF_1606 0.32 -0.4
1,978,574 - DvMF_1606 0.34 +1.6
1,978,811 - DvMF_1606 0.55 -0.5
1,978,895 + DvMF_1606 0.62 -0.2
1,978,929 - DvMF_1606 0.65 -0.1
1,979,023 + DvMF_1606 0.73 -0.0
1,979,046 + DvMF_1606 0.75 -0.2
1,979,377 - -0.6
1,979,789 + DvMF_1607 0.42 +0.2
1,979,876 + DvMF_1607 0.54 -0.5
1,980,336 - -0.1

Or see this region's nucleotide sequence