Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0867

Experiment: MoYLS4 media with N2 no edta

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_0866 and DvMF_0867 are separated by 429 nucleotidesDvMF_0867 and DvMF_0868 are separated by 530 nucleotides DvMF_0866: DvMF_0866 - ammonium transporter (RefSeq), at 1,043,694 to 1,044,902 _0866 DvMF_0867: DvMF_0867 - Redoxin domain protein (RefSeq), at 1,045,332 to 1,045,844 _0867 DvMF_0868: DvMF_0868 - hypothetical protein (RefSeq), at 1,046,375 to 1,046,848 _0868 Position (kb) 1045 1046Strain fitness (log2 ratio) -1 0 1at 1044.350 kb on - strand, within DvMF_0866at 1044.397 kb on + strand, within DvMF_0866at 1044.582 kb on - strand, within DvMF_0866at 1044.784 kb on + strandat 1044.818 kb on - strandat 1044.828 kb on - strandat 1044.926 kb on + strandat 1044.943 kb on - strandat 1044.991 kb on - strandat 1045.274 kb on - strandat 1045.501 kb on + strand, within DvMF_0867at 1045.558 kb on + strand, within DvMF_0867at 1045.621 kb on - strand, within DvMF_0867at 1045.810 kb on + strandat 1045.823 kb on - strandat 1046.022 kb on - strandat 1046.046 kb on + strandat 1046.054 kb on - strandat 1046.064 kb on - strandat 1046.064 kb on - strandat 1046.064 kb on - strandat 1046.066 kb on + strandat 1046.074 kb on - strandat 1046.074 kb on - strandat 1046.074 kb on - strandat 1046.076 kb on + strandat 1046.224 kb on + strandat 1046.273 kb on + strandat 1046.281 kb on - strandat 1046.791 kb on + strand, within DvMF_0868

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 media with N2 no edta
remove
1,044,350 - DvMF_0866 0.54 -1.2
1,044,397 + DvMF_0866 0.58 -0.8
1,044,582 - DvMF_0866 0.73 -0.8
1,044,784 + -0.7
1,044,818 - -0.3
1,044,828 - -0.6
1,044,926 + -0.3
1,044,943 - -0.5
1,044,991 - +0.6
1,045,274 - -0.8
1,045,501 + DvMF_0867 0.33 -0.2
1,045,558 + DvMF_0867 0.44 +0.0
1,045,621 - DvMF_0867 0.56 -0.5
1,045,810 + -0.2
1,045,823 - -0.3
1,046,022 - -0.8
1,046,046 + -1.0
1,046,054 - -0.1
1,046,064 - -0.5
1,046,064 - -0.6
1,046,064 - -0.5
1,046,066 + -0.1
1,046,074 - -0.2
1,046,074 - -0.4
1,046,074 - -1.0
1,046,076 + -0.3
1,046,224 + -1.1
1,046,273 + -0.2
1,046,281 - +1.7
1,046,791 + DvMF_0868 0.88 -0.5

Or see this region's nucleotide sequence