Experiment: MoYLS4 media with N2 no edta
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0231 and DvMF_0232 are separated by 254 nucleotides DvMF_0232 and DvMF_0233 are separated by 31 nucleotides DvMF_0233 and DvMF_0234 are separated by 115 nucleotides DvMF_0234 and DvMF_0235 are separated by 309 nucleotides
DvMF_0231: DvMF_0231 - ATPase associated with various cellular activities AAA_5 (RefSeq), at 258,427 to 259,959
_0231
DvMF_0232: DvMF_0232 - no description, at 260,214 to 260,414
_0232
DvMF_0233: DvMF_0233 - no description, at 260,446 to 260,712
_0233
DvMF_0234: DvMF_0234 - GTP-dependent nucleic acid-binding protein EngD (RefSeq), at 260,828 to 261,928
_0234
DvMF_0235: DvMF_0235 - Lysine exporter protein (LYSE/YGGA) (RefSeq), at 262,238 to 262,888
_0235
Position (kb) 260
261
262 Strain fitness (log2 ratio) -1
0
1 at 260.482 kb on - strand, within DvMF_0233 at 260.534 kb on + strand, within DvMF_0233 at 260.564 kb on - strand, within DvMF_0233 at 260.564 kb on - strand, within DvMF_0233 at 260.564 kb on - strand, within DvMF_0233 at 260.647 kb on + strand, within DvMF_0233 at 260.794 kb on - strand at 261.067 kb on + strand, within DvMF_0234 at 261.298 kb on - strand, within DvMF_0234 at 261.311 kb on + strand, within DvMF_0234 at 261.819 kb on - strand at 261.877 kb on + strand at 262.017 kb on - strand at 262.308 kb on + strand, within DvMF_0235 at 262.527 kb on + strand, within DvMF_0235 at 262.670 kb on + strand, within DvMF_0235
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 media with N2 no edta remove 260,482 - DvMF_0233 0.13 -0.5 260,534 + DvMF_0233 0.33 -0.8 260,564 - DvMF_0233 0.44 -0.3 260,564 - DvMF_0233 0.44 -0.2 260,564 - DvMF_0233 0.44 -0.3 260,647 + DvMF_0233 0.75 -0.1 260,794 - -0.4 261,067 + DvMF_0234 0.22 -1.7 261,298 - DvMF_0234 0.43 -0.9 261,311 + DvMF_0234 0.44 +1.2 261,819 - -1.7 261,877 + -0.8 262,017 - +0.5 262,308 + DvMF_0235 0.11 -0.9 262,527 + DvMF_0235 0.44 -0.1 262,670 + DvMF_0235 0.66 -0.0
Or see this region's nucleotide sequence