Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2682

Experiment: MoLS4 with L-Homoserine as nutrient 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfld and DVU2682 are separated by 736 nucleotidesDVU2682 and DORF43224 are separated by 466 nucleotidesDORF43224 and DVU2683 are separated by 144 nucleotides DVU2680: fld - flavodoxin, iron-repressed (Dmitry Rodionov), at 2,794,035 to 2,794,481 fld DVU2682: DVU2682 - DedA family protein (TIGR), at 2,795,218 to 2,795,859 DVU2682 DORF43224: DORF43224 - no description, at 2,796,326 to 2,796,499 DORF43224 DVU2683: DVU2683 - L-lactate permease family protein (TIGR), at 2,796,644 to 2,798,194 DVU2683 Position (kb) 2795 2796Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2794.253 kb on + strand, within fldat 2794.264 kb on + strand, within fldat 2794.272 kb on - strand, within fldat 2794.288 kb on + strand, within fldat 2794.329 kb on - strand, within fldat 2794.436 kb on + strand, within fldat 2794.466 kb on + strandat 2794.544 kb on - strandat 2794.653 kb on + strandat 2794.661 kb on - strandat 2794.661 kb on - strandat 2794.755 kb on + strandat 2794.841 kb on + strandat 2794.855 kb on - strandat 2794.858 kb on + strandat 2794.889 kb on + strandat 2794.916 kb on - strandat 2794.969 kb on - strandat 2795.011 kb on - strandat 2795.022 kb on - strandat 2795.024 kb on + strandat 2795.025 kb on - strandat 2795.073 kb on + strandat 2795.114 kb on - strandat 2795.190 kb on + strandat 2795.258 kb on + strandat 2795.293 kb on + strand, within DVU2682at 2795.303 kb on + strand, within DVU2682at 2795.364 kb on - strand, within DVU2682at 2795.389 kb on - strand, within DVU2682at 2795.637 kb on - strand, within DVU2682at 2795.768 kb on + strand, within DVU2682at 2795.911 kb on - strandat 2795.922 kb on + strandat 2795.990 kb on + strandat 2796.030 kb on + strandat 2796.188 kb on + strandat 2796.196 kb on - strandat 2796.260 kb on - strandat 2796.312 kb on + strandat 2796.316 kb on + strandat 2796.335 kb on + strandat 2796.419 kb on - strand, within DORF43224at 2796.421 kb on + strand, within DORF43224at 2796.519 kb on - strandat 2796.536 kb on + strandat 2796.544 kb on - strandat 2796.544 kb on - strandat 2796.643 kb on + strandat 2796.643 kb on + strandat 2796.651 kb on - strandat 2796.661 kb on - strandat 2796.691 kb on - strandat 2796.758 kb on - strandat 2796.781 kb on + strandat 2796.788 kb on + strandat 2796.850 kb on + strand, within DVU2683at 2796.850 kb on + strand, within DVU2683at 2796.858 kb on - strand, within DVU2683at 2796.858 kb on - strand, within DVU2683

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Homoserine as nutrient 10mM
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2,794,253 + fld DVU2680 0.49 -0.4
2,794,264 + fld DVU2680 0.51 +1.0
2,794,272 - fld DVU2680 0.53 -0.6
2,794,288 + fld DVU2680 0.57 -1.3
2,794,329 - fld DVU2680 0.66 +1.4
2,794,436 + fld DVU2680 0.90 +0.5
2,794,466 + -0.1
2,794,544 - -0.1
2,794,653 + -1.7
2,794,661 - -0.0
2,794,661 - -0.7
2,794,755 + -0.1
2,794,841 + -0.1
2,794,855 - -1.3
2,794,858 + -0.3
2,794,889 + -0.1
2,794,916 - +0.1
2,794,969 - -1.1
2,795,011 - +0.2
2,795,022 - +0.3
2,795,024 + +0.0
2,795,025 - +0.2
2,795,073 + -1.4
2,795,114 - -0.9
2,795,190 + -0.4
2,795,258 + -0.2
2,795,293 + DVU2682 0.12 +0.3
2,795,303 + DVU2682 0.13 -3.4
2,795,364 - DVU2682 0.23 +2.3
2,795,389 - DVU2682 0.27 -0.8
2,795,637 - DVU2682 0.65 -0.6
2,795,768 + DVU2682 0.86 -1.7
2,795,911 - -0.3
2,795,922 + +0.1
2,795,990 + -0.2
2,796,030 + +0.6
2,796,188 + +0.6
2,796,196 - -0.5
2,796,260 - -0.5
2,796,312 + +0.7
2,796,316 + -1.3
2,796,335 + -0.0
2,796,419 - DORF43224 0.53 -0.3
2,796,421 + DORF43224 0.55 -1.4
2,796,519 - -0.6
2,796,536 + -1.3
2,796,544 - -0.3
2,796,544 - -0.3
2,796,643 + -0.4
2,796,643 + +0.3
2,796,651 - +0.5
2,796,661 - +0.1
2,796,691 - -0.0
2,796,758 - -0.2
2,796,781 + -0.7
2,796,788 + -1.1
2,796,850 + DVU2683 0.13 +0.2
2,796,850 + DVU2683 0.13 -0.5
2,796,858 - DVU2683 0.14 +0.9
2,796,858 - DVU2683 0.14 +0.3

Or see this region's nucleotide sequence