Experiment: diet=HighFatHighSugar; sample=FecalPellet; mouse11; day1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS11660 and BBR_RS11665 are separated by 109 nucleotides BBR_RS11665 and BBR_RS11670 are separated by 126 nucleotides
BBR_RS11660: BBR_RS11660 - YHS domain-containing protein, at 369,674 to 372,310
_RS11660
BBR_RS11665: BBR_RS11665 - hypothetical protein, at 372,420 to 372,701
_RS11665
BBR_RS11670: BBR_RS11670 - DNA recombination protein RmuC, at 372,828 to 374,255
_RS11670
Position (kb) 372
373 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 371.450 kb on - strand, within BBR_RS11660 at 371.450 kb on - strand, within BBR_RS11660 at 371.464 kb on + strand, within BBR_RS11660 at 371.464 kb on + strand, within BBR_RS11660 at 371.464 kb on + strand, within BBR_RS11660 at 371.464 kb on + strand, within BBR_RS11660 at 371.472 kb on + strand, within BBR_RS11660 at 371.472 kb on - strand, within BBR_RS11660 at 371.472 kb on - strand, within BBR_RS11660 at 371.488 kb on - strand, within BBR_RS11660 at 371.506 kb on + strand, within BBR_RS11660 at 371.506 kb on + strand, within BBR_RS11660 at 371.507 kb on + strand, within BBR_RS11660 at 371.514 kb on - strand, within BBR_RS11660 at 371.525 kb on + strand, within BBR_RS11660 at 371.533 kb on + strand, within BBR_RS11660 at 371.533 kb on + strand, within BBR_RS11660 at 371.533 kb on + strand, within BBR_RS11660 at 371.533 kb on + strand, within BBR_RS11660 at 371.541 kb on - strand, within BBR_RS11660 at 371.541 kb on - strand, within BBR_RS11660 at 371.541 kb on - strand, within BBR_RS11660 at 371.543 kb on + strand, within BBR_RS11660 at 371.546 kb on - strand, within BBR_RS11660 at 371.548 kb on + strand, within BBR_RS11660 at 371.619 kb on + strand, within BBR_RS11660 at 371.635 kb on - strand, within BBR_RS11660 at 371.635 kb on - strand, within BBR_RS11660 at 371.642 kb on + strand, within BBR_RS11660 at 371.652 kb on + strand, within BBR_RS11660 at 371.655 kb on + strand, within BBR_RS11660 at 371.660 kb on + strand, within BBR_RS11660 at 371.668 kb on - strand, within BBR_RS11660 at 371.668 kb on - strand, within BBR_RS11660 at 371.673 kb on + strand, within BBR_RS11660 at 371.683 kb on - strand, within BBR_RS11660 at 371.692 kb on + strand, within BBR_RS11660 at 371.692 kb on + strand, within BBR_RS11660 at 371.692 kb on + strand, within BBR_RS11660 at 371.719 kb on - strand, within BBR_RS11660 at 371.736 kb on + strand, within BBR_RS11660 at 371.738 kb on + strand, within BBR_RS11660 at 371.743 kb on + strand, within BBR_RS11660 at 371.743 kb on + strand, within BBR_RS11660 at 371.746 kb on - strand, within BBR_RS11660 at 371.746 kb on - strand, within BBR_RS11660 at 371.756 kb on - strand, within BBR_RS11660 at 371.763 kb on + strand, within BBR_RS11660 at 371.767 kb on + strand, within BBR_RS11660 at 371.768 kb on + strand, within BBR_RS11660 at 371.768 kb on + strand, within BBR_RS11660 at 371.771 kb on - strand, within BBR_RS11660 at 371.773 kb on + strand, within BBR_RS11660 at 371.776 kb on - strand, within BBR_RS11660 at 371.776 kb on - strand, within BBR_RS11660 at 371.778 kb on + strand, within BBR_RS11660 at 371.786 kb on - strand, within BBR_RS11660 at 371.818 kb on - strand, within BBR_RS11660 at 371.827 kb on + strand, within BBR_RS11660 at 371.838 kb on + strand, within BBR_RS11660 at 371.850 kb on - strand, within BBR_RS11660 at 371.858 kb on + strand, within BBR_RS11660 at 371.858 kb on + strand, within BBR_RS11660 at 371.858 kb on + strand, within BBR_RS11660 at 371.866 kb on - strand, within BBR_RS11660 at 371.866 kb on - strand, within BBR_RS11660 at 371.888 kb on - strand, within BBR_RS11660 at 371.893 kb on + strand, within BBR_RS11660 at 371.897 kb on - strand, within BBR_RS11660 at 371.901 kb on - strand, within BBR_RS11660 at 371.939 kb on - strand, within BBR_RS11660 at 371.939 kb on - strand, within BBR_RS11660 at 371.950 kb on - strand, within BBR_RS11660 at 371.955 kb on - strand, within BBR_RS11660 at 372.001 kb on + strand, within BBR_RS11660 at 372.053 kb on + strand at 372.059 kb on + strand at 372.069 kb on - strand at 372.086 kb on + strand at 372.088 kb on + strand at 372.128 kb on + strand at 372.134 kb on + strand at 372.136 kb on + strand at 372.136 kb on + strand at 372.136 kb on - strand at 372.136 kb on - strand at 372.139 kb on + strand at 372.139 kb on + strand at 372.147 kb on - strand at 372.177 kb on + strand at 372.187 kb on + strand at 372.195 kb on - strand at 372.245 kb on + strand at 372.261 kb on - strand at 372.267 kb on + strand at 372.324 kb on + strand at 372.329 kb on + strand at 372.329 kb on + strand at 372.329 kb on + strand at 372.329 kb on + strand at 372.329 kb on + strand at 372.329 kb on + strand at 372.337 kb on - strand at 372.337 kb on - strand at 372.337 kb on - strand at 372.337 kb on - strand at 372.390 kb on - strand at 372.392 kb on + strand at 372.482 kb on + strand, within BBR_RS11665 at 372.490 kb on + strand, within BBR_RS11665 at 372.526 kb on - strand, within BBR_RS11665 at 372.602 kb on + strand, within BBR_RS11665 at 372.618 kb on - strand, within BBR_RS11665 at 372.622 kb on + strand, within BBR_RS11665 at 372.624 kb on + strand, within BBR_RS11665 at 372.692 kb on - strand at 372.692 kb on - strand at 372.693 kb on + strand at 372.702 kb on - strand at 372.705 kb on + strand at 372.737 kb on + strand at 372.759 kb on + strand at 372.764 kb on + strand at 372.772 kb on - strand at 372.811 kb on + strand at 372.819 kb on - strand at 372.826 kb on - strand at 372.847 kb on + strand at 372.847 kb on - strand at 372.847 kb on - strand at 372.857 kb on + strand at 372.862 kb on + strand at 372.880 kb on + strand at 372.880 kb on + strand at 372.886 kb on + strand at 372.888 kb on - strand at 372.927 kb on + strand at 372.927 kb on + strand at 372.927 kb on + strand at 372.927 kb on + strand at 372.927 kb on + strand at 372.928 kb on - strand at 372.935 kb on - strand at 372.980 kb on - strand, within BBR_RS11670 at 373.004 kb on - strand, within BBR_RS11670 at 373.046 kb on + strand, within BBR_RS11670 at 373.053 kb on + strand, within BBR_RS11670 at 373.054 kb on - strand, within BBR_RS11670 at 373.097 kb on + strand, within BBR_RS11670 at 373.105 kb on - strand, within BBR_RS11670 at 373.153 kb on + strand, within BBR_RS11670 at 373.156 kb on - strand, within BBR_RS11670 at 373.158 kb on + strand, within BBR_RS11670 at 373.166 kb on + strand, within BBR_RS11670 at 373.166 kb on + strand, within BBR_RS11670 at 373.166 kb on + strand, within BBR_RS11670 at 373.166 kb on + strand, within BBR_RS11670 at 373.166 kb on + strand, within BBR_RS11670 at 373.166 kb on + strand, within BBR_RS11670 at 373.196 kb on - strand, within BBR_RS11670 at 373.201 kb on + strand, within BBR_RS11670 at 373.201 kb on - strand, within BBR_RS11670 at 373.209 kb on + strand, within BBR_RS11670 at 373.221 kb on - strand, within BBR_RS11670 at 373.240 kb on - strand, within BBR_RS11670 at 373.242 kb on - strand, within BBR_RS11670 at 373.258 kb on - strand, within BBR_RS11670 at 373.286 kb on + strand, within BBR_RS11670 at 373.286 kb on + strand, within BBR_RS11670 at 373.293 kb on - strand, within BBR_RS11670 at 373.332 kb on - strand, within BBR_RS11670 at 373.344 kb on + strand, within BBR_RS11670 at 373.344 kb on + strand, within BBR_RS11670 at 373.354 kb on - strand, within BBR_RS11670 at 373.402 kb on + strand, within BBR_RS11670 at 373.408 kb on + strand, within BBR_RS11670 at 373.408 kb on - strand, within BBR_RS11670 at 373.417 kb on + strand, within BBR_RS11670 at 373.417 kb on + strand, within BBR_RS11670 at 373.417 kb on + strand, within BBR_RS11670 at 373.417 kb on + strand, within BBR_RS11670 at 373.424 kb on + strand, within BBR_RS11670 at 373.425 kb on - strand, within BBR_RS11670 at 373.465 kb on - strand, within BBR_RS11670 at 373.469 kb on + strand, within BBR_RS11670 at 373.484 kb on - strand, within BBR_RS11670 at 373.510 kb on - strand, within BBR_RS11670 at 373.512 kb on + strand, within BBR_RS11670 at 373.516 kb on + strand, within BBR_RS11670 at 373.532 kb on - strand, within BBR_RS11670 at 373.539 kb on - strand, within BBR_RS11670 at 373.543 kb on + strand, within BBR_RS11670 at 373.555 kb on - strand, within BBR_RS11670 at 373.560 kb on + strand, within BBR_RS11670 at 373.568 kb on - strand, within BBR_RS11670 at 373.570 kb on + strand, within BBR_RS11670 at 373.580 kb on - strand, within BBR_RS11670 at 373.599 kb on - strand, within BBR_RS11670 at 373.601 kb on + strand, within BBR_RS11670 at 373.615 kb on + strand, within BBR_RS11670 at 373.648 kb on + strand, within BBR_RS11670 at 373.666 kb on + strand, within BBR_RS11670 at 373.700 kb on - strand, within BBR_RS11670
Per-strain Table
Position Strand Gene LocusTag Fraction diet=HighFatHighSugar; sample=FecalPellet; mouse11; day1 remove 371,450 - BBR_RS11660 0.67 -1.5 371,450 - BBR_RS11660 0.67 -0.1 371,464 + BBR_RS11660 0.68 -1.1 371,464 + BBR_RS11660 0.68 -1.7 371,464 + BBR_RS11660 0.68 -3.9 371,464 + BBR_RS11660 0.68 -1.9 371,472 + BBR_RS11660 0.68 -3.1 371,472 - BBR_RS11660 0.68 +0.6 371,472 - BBR_RS11660 0.68 -2.7 371,488 - BBR_RS11660 0.69 -0.4 371,506 + BBR_RS11660 0.69 -1.2 371,506 + BBR_RS11660 0.69 -2.1 371,507 + BBR_RS11660 0.70 -2.1 371,514 - BBR_RS11660 0.70 -3.1 371,525 + BBR_RS11660 0.70 -0.7 371,533 + BBR_RS11660 0.70 -2.2 371,533 + BBR_RS11660 0.70 -1.5 371,533 + BBR_RS11660 0.70 -2.0 371,533 + BBR_RS11660 0.70 +0.2 371,541 - BBR_RS11660 0.71 -0.9 371,541 - BBR_RS11660 0.71 +1.8 371,541 - BBR_RS11660 0.71 +0.6 371,543 + BBR_RS11660 0.71 -0.6 371,546 - BBR_RS11660 0.71 +0.6 371,548 + BBR_RS11660 0.71 -1.7 371,619 + BBR_RS11660 0.74 -0.7 371,635 - BBR_RS11660 0.74 -3.3 371,635 - BBR_RS11660 0.74 -1.7 371,642 + BBR_RS11660 0.75 -2.9 371,652 + BBR_RS11660 0.75 -0.5 371,655 + BBR_RS11660 0.75 -1.9 371,660 + BBR_RS11660 0.75 -2.9 371,668 - BBR_RS11660 0.76 -2.6 371,668 - BBR_RS11660 0.76 -2.8 371,673 + BBR_RS11660 0.76 -1.3 371,683 - BBR_RS11660 0.76 +0.8 371,692 + BBR_RS11660 0.77 -2.2 371,692 + BBR_RS11660 0.77 +0.2 371,692 + BBR_RS11660 0.77 -1.8 371,719 - BBR_RS11660 0.78 -2.5 371,736 + BBR_RS11660 0.78 -1.9 371,738 + BBR_RS11660 0.78 +0.6 371,743 + BBR_RS11660 0.78 -0.1 371,743 + BBR_RS11660 0.78 -3.2 371,746 - BBR_RS11660 0.79 +0.1 371,746 - BBR_RS11660 0.79 -1.8 371,756 - BBR_RS11660 0.79 -3.5 371,763 + BBR_RS11660 0.79 -0.1 371,767 + BBR_RS11660 0.79 -1.7 371,768 + BBR_RS11660 0.79 -3.9 371,768 + BBR_RS11660 0.79 -0.1 371,771 - BBR_RS11660 0.80 -1.1 371,773 + BBR_RS11660 0.80 -1.6 371,776 - BBR_RS11660 0.80 -2.7 371,776 - BBR_RS11660 0.80 -2.8 371,778 + BBR_RS11660 0.80 -2.2 371,786 - BBR_RS11660 0.80 +0.2 371,818 - BBR_RS11660 0.81 -1.6 371,827 + BBR_RS11660 0.82 -1.7 371,838 + BBR_RS11660 0.82 -0.4 371,850 - BBR_RS11660 0.83 -0.7 371,858 + BBR_RS11660 0.83 -1.5 371,858 + BBR_RS11660 0.83 +1.5 371,858 + BBR_RS11660 0.83 -0.2 371,866 - BBR_RS11660 0.83 -3.4 371,866 - BBR_RS11660 0.83 -1.9 371,888 - BBR_RS11660 0.84 +0.5 371,893 + BBR_RS11660 0.84 -2.5 371,897 - BBR_RS11660 0.84 -0.7 371,901 - BBR_RS11660 0.84 -0.0 371,939 - BBR_RS11660 0.86 +0.4 371,939 - BBR_RS11660 0.86 -1.3 371,950 - BBR_RS11660 0.86 -1.7 371,955 - BBR_RS11660 0.86 +0.2 372,001 + BBR_RS11660 0.88 -0.2 372,053 + -0.2 372,059 + -1.3 372,069 - -1.8 372,086 + +1.3 372,088 + -1.2 372,128 + -2.5 372,134 + +1.4 372,136 + -1.1 372,136 + -0.5 372,136 - -0.8 372,136 - -0.0 372,139 + -1.8 372,139 + -3.8 372,147 - +0.5 372,177 + +1.3 372,187 + +1.3 372,195 - -0.6 372,245 + -0.0 372,261 - +0.6 372,267 + -3.2 372,324 + +0.6 372,329 + +3.2 372,329 + +2.9 372,329 + +2.9 372,329 + +2.3 372,329 + +2.9 372,329 + +2.4 372,337 - +2.6 372,337 - +2.7 372,337 - +2.4 372,337 - +2.4 372,390 - +2.2 372,392 + +0.3 372,482 + BBR_RS11665 0.22 +2.9 372,490 + BBR_RS11665 0.25 +3.2 372,526 - BBR_RS11665 0.38 +2.2 372,602 + BBR_RS11665 0.65 +2.8 372,618 - BBR_RS11665 0.70 +3.0 372,622 + BBR_RS11665 0.72 +2.8 372,624 + BBR_RS11665 0.72 +3.0 372,692 - +1.9 372,692 - +3.5 372,693 + -2.0 372,702 - +0.4 372,705 + +1.9 372,737 + -1.2 372,759 + -0.1 372,764 + +0.1 372,772 - +0.6 372,811 + +0.7 372,819 - +0.3 372,826 - -0.6 372,847 + +0.8 372,847 - -2.6 372,847 - +0.2 372,857 + -0.3 372,862 + +1.0 372,880 + -2.1 372,880 + +0.5 372,886 + +0.6 372,888 - -0.2 372,927 + -0.1 372,927 + -3.1 372,927 + -1.4 372,927 + +0.0 372,927 + +0.2 372,928 - -0.2 372,935 - -1.8 372,980 - BBR_RS11670 0.11 +0.3 373,004 - BBR_RS11670 0.12 -0.6 373,046 + BBR_RS11670 0.15 -1.1 373,053 + BBR_RS11670 0.16 -0.5 373,054 - BBR_RS11670 0.16 -0.4 373,097 + BBR_RS11670 0.19 -1.9 373,105 - BBR_RS11670 0.19 -1.6 373,153 + BBR_RS11670 0.23 -2.6 373,156 - BBR_RS11670 0.23 -2.8 373,158 + BBR_RS11670 0.23 -1.3 373,166 + BBR_RS11670 0.24 +0.5 373,166 + BBR_RS11670 0.24 -1.2 373,166 + BBR_RS11670 0.24 -0.1 373,166 + BBR_RS11670 0.24 -0.7 373,166 + BBR_RS11670 0.24 +0.1 373,166 + BBR_RS11670 0.24 +1.4 373,196 - BBR_RS11670 0.26 -1.6 373,201 + BBR_RS11670 0.26 +0.3 373,201 - BBR_RS11670 0.26 -0.4 373,209 + BBR_RS11670 0.27 -1.3 373,221 - BBR_RS11670 0.28 +0.3 373,240 - BBR_RS11670 0.29 +0.0 373,242 - BBR_RS11670 0.29 +0.3 373,258 - BBR_RS11670 0.30 -0.1 373,286 + BBR_RS11670 0.32 +0.5 373,286 + BBR_RS11670 0.32 -0.2 373,293 - BBR_RS11670 0.33 +0.3 373,332 - BBR_RS11670 0.35 +1.1 373,344 + BBR_RS11670 0.36 -1.5 373,344 + BBR_RS11670 0.36 +0.8 373,354 - BBR_RS11670 0.37 +1.4 373,402 + BBR_RS11670 0.40 -1.0 373,408 + BBR_RS11670 0.41 -0.5 373,408 - BBR_RS11670 0.41 -0.7 373,417 + BBR_RS11670 0.41 -1.1 373,417 + BBR_RS11670 0.41 +0.9 373,417 + BBR_RS11670 0.41 -0.8 373,417 + BBR_RS11670 0.41 -0.2 373,424 + BBR_RS11670 0.42 -0.5 373,425 - BBR_RS11670 0.42 -0.5 373,465 - BBR_RS11670 0.45 +0.9 373,469 + BBR_RS11670 0.45 +0.2 373,484 - BBR_RS11670 0.46 +1.0 373,510 - BBR_RS11670 0.48 -0.5 373,512 + BBR_RS11670 0.48 +1.3 373,516 + BBR_RS11670 0.48 +1.0 373,532 - BBR_RS11670 0.49 -2.9 373,539 - BBR_RS11670 0.50 -2.6 373,543 + BBR_RS11670 0.50 +0.5 373,555 - BBR_RS11670 0.51 -1.7 373,560 + BBR_RS11670 0.51 +0.8 373,568 - BBR_RS11670 0.52 -0.2 373,570 + BBR_RS11670 0.52 +0.0 373,580 - BBR_RS11670 0.53 +1.3 373,599 - BBR_RS11670 0.54 +0.4 373,601 + BBR_RS11670 0.54 -1.3 373,615 + BBR_RS11670 0.55 -1.7 373,648 + BBR_RS11670 0.57 -2.2 373,666 + BBR_RS11670 0.59 -0.4 373,700 - BBR_RS11670 0.61 +0.8
Or see this region's nucleotide sequence