Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS10805

Experiment: diet=HighFatHighSugar; sample=FecalPellet; mouse11; day1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	diet=HighFatHighSugar; sample=FecalPellet; mouse11; day1
152,105	-		BBR_RS10800	0.33	-0.5
152,110	-		BBR_RS10800	0.33	+0.7
152,110	-		BBR_RS10800	0.33	+0.0
152,117	+		BBR_RS10800	0.34	+0.8
152,131	-		BBR_RS10800	0.35	+0.4
152,135	+		BBR_RS10800	0.36	-2.9
152,145	+		BBR_RS10800	0.37	+0.9
152,154	+		BBR_RS10800	0.38	-1.6
152,163	-		BBR_RS10800	0.38	+2.9
152,175	+		BBR_RS10800	0.40	+0.4
152,177	+		BBR_RS10800	0.40	+0.5
152,180	+		BBR_RS10800	0.40	+0.5
152,191	+		BBR_RS10800	0.41	+1.4
152,191	+		BBR_RS10800	0.41	-0.2
152,198	-		BBR_RS10800	0.42	-3.1
152,198	-		BBR_RS10800	0.42	+1.1
152,217	+		BBR_RS10800	0.44	+0.3
152,225	-		BBR_RS10800	0.44	+0.2
152,226	+		BBR_RS10800	0.44	+0.6
152,234	+		BBR_RS10800	0.45	+0.3
152,235	+		BBR_RS10800	0.45	+1.1
152,235	+		BBR_RS10800	0.45	-0.9
152,240	+		BBR_RS10800	0.46	+0.8
152,240	+		BBR_RS10800	0.46	+0.9
152,242	-		BBR_RS10800	0.46	-0.7
152,242	-		BBR_RS10800	0.46	+0.2
152,242	-		BBR_RS10800	0.46	+0.5
152,248	-		BBR_RS10800	0.47	-0.2
152,248	-		BBR_RS10800	0.47	-0.6
152,248	-		BBR_RS10800	0.47	+0.7
152,248	-		BBR_RS10800	0.47	-0.7
152,252	+		BBR_RS10800	0.47	+0.9
152,252	+		BBR_RS10800	0.47	-0.2
152,260	-		BBR_RS10800	0.48	-0.1
152,264	+		BBR_RS10800	0.48	+0.5
152,264	+		BBR_RS10800	0.48	+0.2
152,264	+		BBR_RS10800	0.48	+0.9
152,264	+		BBR_RS10800	0.48	-1.6
152,264	+		BBR_RS10800	0.48	-1.1
152,264	+		BBR_RS10800	0.48	+0.3
152,271	+		BBR_RS10800	0.49	+1.1
152,271	+		BBR_RS10800	0.49	-0.0
152,271	+		BBR_RS10800	0.49	+0.1
152,271	+		BBR_RS10800	0.49	+0.7
152,279	-		BBR_RS10800	0.49	+1.3
152,280	-		BBR_RS10800	0.50	+2.0
152,300	+		BBR_RS10800	0.51	+0.7
152,308	+		BBR_RS10800	0.52	-0.2
152,308	+		BBR_RS10800	0.52	-0.4
152,308	+		BBR_RS10800	0.52	-0.8
152,311	+		BBR_RS10800	0.53	+0.2
152,314	-		BBR_RS10800	0.53	-0.3
152,316	+		BBR_RS10800	0.53	-0.5
152,316	-		BBR_RS10800	0.53	+1.3
152,319	-		BBR_RS10800	0.53	-1.7
152,319	-		BBR_RS10800	0.53	-0.4
152,321	+		BBR_RS10800	0.53	+0.7
152,326	+		BBR_RS10800	0.54	-2.6
152,329	-		BBR_RS10800	0.54	+0.6
152,331	+		BBR_RS10800	0.54	-0.1
152,331	+		BBR_RS10800	0.54	-0.6
152,334	-		BBR_RS10800	0.55	+0.2
152,352	+		BBR_RS10800	0.56	+1.3
152,359	-		BBR_RS10800	0.57	-0.7
152,363	-		BBR_RS10800	0.57	+1.8
152,376	-		BBR_RS10800	0.59	+1.3
152,388	+		BBR_RS10800	0.60	+0.4
152,388	+		BBR_RS10800	0.60	-0.5
152,402	+		BBR_RS10800	0.61	+0.4
152,418	-		BBR_RS10800	0.63	-0.4
152,434	+		BBR_RS10800	0.64	-0.2
152,443	-		BBR_RS10800	0.65	-0.3
152,478	+		BBR_RS10800	0.68	-2.1
152,487	+		BBR_RS10800	0.69	+0.2
152,492	+		BBR_RS10800	0.70	-1.2
152,495	-		BBR_RS10800	0.70	-1.2
152,499	+		BBR_RS10800	0.70	-1.9
152,502	+		BBR_RS10800	0.71	-1.5
152,502	+		BBR_RS10800	0.71	+1.0
152,510	-		BBR_RS10800	0.71	-1.5
152,510	-		BBR_RS10800	0.71	-1.0
152,512	+		BBR_RS10800	0.72	-1.8
152,512	+		BBR_RS10800	0.72	+0.9
152,512	+		BBR_RS10800	0.72	+0.4
152,512	+		BBR_RS10800	0.72	+1.1
152,512	+		BBR_RS10800	0.72	-1.2
152,512	+		BBR_RS10800	0.72	-1.9
152,512	+		BBR_RS10800	0.72	-1.5
152,512	+		BBR_RS10800	0.72	+0.8
152,515	-		BBR_RS10800	0.72	+0.9
152,520	-		BBR_RS10800	0.72	-1.5
152,520	-		BBR_RS10800	0.72	-0.0
152,523	+		BBR_RS10800	0.73	+0.0
152,523	+		BBR_RS10800	0.73	-0.0
152,523	+		BBR_RS10800	0.73	+1.0
152,523	+		BBR_RS10800	0.73	-0.6
152,523	+		BBR_RS10800	0.73	+0.9
152,531	-		BBR_RS10800	0.73	-1.9
152,531	-		BBR_RS10800	0.73	+0.2
152,534	-		BBR_RS10800	0.74	-1.9
152,535	+		BBR_RS10800	0.74	-0.3
152,535	+		BBR_RS10800	0.74	-0.1
152,535	+		BBR_RS10800	0.74	+0.4
152,536	-		BBR_RS10800	0.74	-0.7
152,540	-		BBR_RS10800	0.74	+0.3
152,542	+		BBR_RS10800	0.74	-1.3
152,542	+		BBR_RS10800	0.74	+1.0
152,543	-		BBR_RS10800	0.75	-2.5
152,543	-		BBR_RS10800	0.75	-0.2
152,550	-		BBR_RS10800	0.75	+0.1
152,552	+		BBR_RS10800	0.75	+1.3
152,562	-		BBR_RS10800	0.76	-0.3
152,567	-		BBR_RS10800	0.77	+2.1
152,578	+		BBR_RS10800	0.78	-0.4
152,582	+		BBR_RS10800	0.78	-2.5
152,582	+		BBR_RS10800	0.78	-1.2
152,582	+		BBR_RS10800	0.78	-1.1
152,582	+		BBR_RS10800	0.78	-0.4
152,582	+		BBR_RS10800	0.78	+1.1
152,586	+		BBR_RS10800	0.79	-1.3
152,588	+		BBR_RS10800	0.79	-1.3
152,590	-		BBR_RS10800	0.79	+1.6
152,605	-		BBR_RS10800	0.80	-1.9
152,611	-		BBR_RS10800	0.81	-2.8
152,624	+		BBR_RS10800	0.82	+0.4
152,624	+		BBR_RS10800	0.82	+0.7
152,624	+		BBR_RS10800	0.82	+0.3
152,624	+		BBR_RS10800	0.82	+0.3
152,624	+		BBR_RS10800	0.82	-1.6
152,629	+		BBR_RS10800	0.83	-2.6
152,632	-		BBR_RS10800	0.83	+0.9
152,632	-		BBR_RS10800	0.83	+0.9
152,693	+		BBR_RS10800	0.89	+1.3
152,693	+		BBR_RS10800	0.89	-0.2
152,693	+		BBR_RS10800	0.89	+0.9
152,693	+		BBR_RS10800	0.89	+0.2
152,693	+		BBR_RS10800	0.89	-2.7
152,693	+		BBR_RS10800	0.89	-0.0
152,693	+		BBR_RS10800	0.89	+0.9
152,693	-		BBR_RS10800	0.89	+1.3
152,699	-		BBR_RS10800	0.89	+1.6
152,701	-		BBR_RS10800	0.90	-0.5
152,701	-		BBR_RS10800	0.90	+0.9
152,707	+				-0.7
152,707	+				-3.0
152,724	+				+0.5
152,724	+				+0.0
152,743	-				+0.8
152,743	-				-0.5
152,748	+				-0.2
152,753	+				-0.1
152,753	+				-0.1
152,761	-				+0.3
152,761	-				-2.0
152,761	-				-2.2
152,766	+				+0.7
152,773	-				-0.0
152,773	-				+1.0
152,776	+				-0.1
152,790	-				+1.1
152,791	+				-0.4
152,791	+				-1.8
152,795	+				-0.9
152,797	-				+0.3
152,799	-				-1.1
152,801	+				+1.4
152,809	-				+0.2
152,809	-				+0.4
152,843	+				-0.7
152,848	+				-0.6
152,848	-				+1.2
152,902	-				-0.6
152,918	+				+1.1
152,918	+				+0.3
152,923	-				+0.2
152,943	+				+1.7
152,957	+				-2.3
153,013	+				-0.5
153,013	+				-1.6
153,031	+				-2.8
153,032	-				+0.2
153,039	-				+2.1
153,043	+				-1.0
153,056	-				-0.7
153,072	+				-1.0
153,123	-				+2.8
153,124	-				+3.1
153,128	+				+2.3
153,129	+				+2.4
153,137	-				+1.8
153,156	+				+2.3
153,161	+				+1.6
153,162	+				+1.6
153,163	-				+2.6
153,207	+		BBR_RS10805	0.13	+1.4
153,207	+		BBR_RS10805	0.13	+1.7
153,215	-		BBR_RS10805	0.13	+2.0
153,240	-		BBR_RS10805	0.16	+2.2
153,250	+		BBR_RS10805	0.17	+3.2
153,250	+		BBR_RS10805	0.17	+2.3
153,310	-		BBR_RS10805	0.23	+2.4
153,325	-		BBR_RS10805	0.24	+1.9
153,336	+		BBR_RS10805	0.25	+1.4
153,346	+		BBR_RS10805	0.26	+3.1
153,366	+		BBR_RS10805	0.28	+2.0
153,368	+		BBR_RS10805	0.29	+1.0
153,368	+		BBR_RS10805	0.29	+1.6
153,368	+		BBR_RS10805	0.29	+1.5
153,368	+		BBR_RS10805	0.29	+1.2
153,376	-		BBR_RS10805	0.29	+1.6
153,376	-		BBR_RS10805	0.29	+2.1
153,406	+		BBR_RS10805	0.32	+1.1
153,411	-		BBR_RS10805	0.33	+0.3
153,424	-		BBR_RS10805	0.34	+1.3
153,425	-		BBR_RS10805	0.34	+2.3
153,447	-		BBR_RS10805	0.37	+1.7
153,453	+		BBR_RS10805	0.37	+2.2
153,461	+		BBR_RS10805	0.38	+2.7
153,463	+		BBR_RS10805	0.38	+2.1
153,464	-		BBR_RS10805	0.38	+2.1
153,480	-		BBR_RS10805	0.40	+2.1
153,491	+		BBR_RS10805	0.41	+1.8
153,517	+		BBR_RS10805	0.43	+2.1
153,517	+		BBR_RS10805	0.43	+1.3
153,524	-		BBR_RS10805	0.44	+2.1
153,524	-		BBR_RS10805	0.44	+3.5
153,525	-		BBR_RS10805	0.44	+2.2
153,527	+		BBR_RS10805	0.44	+1.9
153,585	+		BBR_RS10805	0.50	+1.4
153,597	+		BBR_RS10805	0.51	+1.7
153,600	-		BBR_RS10805	0.52	+2.0
153,605	-		BBR_RS10805	0.52	+3.0
153,631	-		BBR_RS10805	0.55	+2.2
153,631	-		BBR_RS10805	0.55	+2.9
153,669	+		BBR_RS10805	0.59	+2.1
153,669	+		BBR_RS10805	0.59	+1.6
153,677	-		BBR_RS10805	0.59	+1.9
153,677	-		BBR_RS10805	0.59	+2.5
153,683	+		BBR_RS10805	0.60	+1.9
153,683	+		BBR_RS10805	0.60	+1.4
153,683	+		BBR_RS10805	0.60	+1.2
153,684	+		BBR_RS10805	0.60	+1.6
153,684	+		BBR_RS10805	0.60	+1.7
153,684	+		BBR_RS10805	0.60	+1.9
153,684	+		BBR_RS10805	0.60	+0.8
153,691	-		BBR_RS10805	0.61	+1.4
153,701	-		BBR_RS10805	0.62	+2.0
153,702	+		BBR_RS10805	0.62	+2.7
153,702	+		BBR_RS10805	0.62	+1.6
153,710	-		BBR_RS10805	0.63	+2.3
153,736	+		BBR_RS10805	0.65	+2.9
153,744	-		BBR_RS10805	0.66	+2.1
153,750	+		BBR_RS10805	0.67	+1.1
153,750	+		BBR_RS10805	0.67	+2.2
153,753	-		BBR_RS10805	0.67	+2.6
153,760	+		BBR_RS10805	0.68	+2.8
153,765	+		BBR_RS10805	0.68	+1.6
153,765	+		BBR_RS10805	0.68	+2.2
153,765	+		BBR_RS10805	0.68	+2.2
153,765	+		BBR_RS10805	0.68	+1.6
153,765	+		BBR_RS10805	0.68	+1.6
153,773	-		BBR_RS10805	0.69	+1.9
153,776	+		BBR_RS10805	0.69	+1.3
153,798	+		BBR_RS10805	0.71	+1.4
153,806	-		BBR_RS10805	0.72	+1.3
153,816	-		BBR_RS10805	0.73	+1.0
153,862	+		BBR_RS10805	0.78	+2.6
153,876	-		BBR_RS10805	0.79	+2.7
153,883	+		BBR_RS10805	0.80	+0.5
153,899	-		BBR_RS10805	0.81	+1.6
153,923	-		BBR_RS10805	0.84	+0.9
153,954	+		BBR_RS10805	0.87	+1.3
153,964	+		BBR_RS10805	0.88	+2.0
153,975	+		BBR_RS10805	0.89	+2.9
153,975	+		BBR_RS10805	0.89	+3.0
153,978	-		BBR_RS10805	0.89	+2.7
153,983	-		BBR_RS10805	0.90	+1.7
153,993	-				+1.7
153,998	+				+2.7
154,003	+				+0.2
154,027	+				+1.9
154,027	+				+2.5
154,027	+				+2.9
154,045	+				+2.0
154,045	+				+0.3
154,045	+				+2.3
154,053	-				+2.0
154,053	-				+3.0
154,063	+				+0.7
154,079	+				-1.4
154,092	+				+1.5
154,094	-				-2.2
154,100	-				+0.9
154,272	+				-1.3
154,272	+				-0.2
154,280	-				-0.1
154,280	-				-1.1
154,285	+				-2.5
154,315	+				-0.8
154,316	-				+0.3
154,318	-				+0.1
154,320	+				+0.5
154,328	+				+0.5
154,328	+				-1.0
154,340	+				+1.5
154,399	-		BBR_RS10810	0.10	+0.5
154,406	-		BBR_RS10810	0.11	-2.1
154,416	+		BBR_RS10810	0.12	+0.2
154,419	-		BBR_RS10810	0.12	+1.6
154,435	-		BBR_RS10810	0.13	-3.0
154,443	+		BBR_RS10810	0.14	-0.0
154,443	+		BBR_RS10810	0.14	-0.4
154,443	+		BBR_RS10810	0.14	+0.5
154,508	-		BBR_RS10810	0.19	-0.0
154,519	-		BBR_RS10810	0.19	+1.4
154,525	-		BBR_RS10810	0.20	+0.9
154,540	-		BBR_RS10810	0.21	+1.2
154,566	+		BBR_RS10810	0.23	-2.6
154,591	-		BBR_RS10810	0.25	+0.5
154,597	+		BBR_RS10810	0.25	+0.1
154,597	+		BBR_RS10810	0.25	-0.6
154,600	-		BBR_RS10810	0.26	+2.6
154,634	+		BBR_RS10810	0.28	+1.0
154,634	+		BBR_RS10810	0.28	-0.4
154,634	+		BBR_RS10810	0.28	+0.1
154,634	+		BBR_RS10810	0.28	-0.0
154,634	+		BBR_RS10810	0.28	+1.4
154,634	+		BBR_RS10810	0.28	+0.4
154,634	-		BBR_RS10810	0.28	+0.6
154,639	+		BBR_RS10810	0.29	+0.6
154,642	-		BBR_RS10810	0.29	+1.1
154,642	-		BBR_RS10810	0.29	+0.7
154,642	-		BBR_RS10810	0.29	+0.5
154,642	-		BBR_RS10810	0.29	-1.2
154,642	-		BBR_RS10810	0.29	+0.3
154,642	-		BBR_RS10810	0.29	-0.4
154,660	+		BBR_RS10810	0.30	+0.0
154,660	+		BBR_RS10810	0.30	+0.6
154,693	+		BBR_RS10810	0.33	+0.5
154,696	-		BBR_RS10810	0.33	-1.5
154,701	-		BBR_RS10810	0.33	+1.3
154,718	+		BBR_RS10810	0.35	-1.3
154,718	+		BBR_RS10810	0.35	+0.5
154,718	+		BBR_RS10810	0.35	+1.2
154,726	-		BBR_RS10810	0.35	+1.7
154,726	-		BBR_RS10810	0.35	+0.4
154,726	-		BBR_RS10810	0.35	+0.5
154,726	-		BBR_RS10810	0.35	+0.8
154,734	+		BBR_RS10810	0.36	-0.1
154,744	+		BBR_RS10810	0.37	+1.3
154,752	+		BBR_RS10810	0.37	+0.9
154,775	+		BBR_RS10810	0.39	-2.5
154,775	+		BBR_RS10810	0.39	+0.7
154,782	+		BBR_RS10810	0.40	+0.6
154,783	-		BBR_RS10810	0.40	+0.2
154,783	-		BBR_RS10810	0.40	+0.3
154,810	+		BBR_RS10810	0.42	+0.7
154,843	+		BBR_RS10810	0.44	+1.1
154,843	+		BBR_RS10810	0.44	+1.0
154,843	-		BBR_RS10810	0.44	-0.4
154,851	-		BBR_RS10810	0.45	-0.7
154,851	-		BBR_RS10810	0.45	+0.2
154,851	-		BBR_RS10810	0.45	+0.4
154,851	-		BBR_RS10810	0.45	-0.4
154,851	-		BBR_RS10810	0.45	-0.2
154,854	+		BBR_RS10810	0.45	+1.2
154,860	+		BBR_RS10810	0.45	-1.6
154,867	-		BBR_RS10810	0.46	+1.6
154,877	+		BBR_RS10810	0.47	+0.3
154,887	+		BBR_RS10810	0.48	-0.3
154,887	+		BBR_RS10810	0.48	-1.2
154,895	+		BBR_RS10810	0.48	+0.8
154,913	-		BBR_RS10810	0.50	+0.1
154,938	+		BBR_RS10810	0.51	+0.7
154,959	+		BBR_RS10810	0.53	+0.4
154,959	+		BBR_RS10810	0.53	-0.7
154,959	+		BBR_RS10810	0.53	-2.9
154,967	-		BBR_RS10810	0.54	-1.2
154,972	-		BBR_RS10810	0.54	-0.2
155,018	+		BBR_RS10810	0.58	+1.3
155,018	+		BBR_RS10810	0.58	+0.8
155,028	+		BBR_RS10810	0.58	+0.5
155,028	+		BBR_RS10810	0.58	-0.6
155,034	+		BBR_RS10810	0.59	-0.8
155,034	+		BBR_RS10810	0.59	-0.9
155,042	+		BBR_RS10810	0.59	-2.8
155,044	+		BBR_RS10810	0.60	+0.7
155,047	-		BBR_RS10810	0.60	+0.5
155,052	-		BBR_RS10810	0.60	+0.3
155,052	-		BBR_RS10810	0.60	+0.3
155,073	+		BBR_RS10810	0.62	+1.3
155,078	+		BBR_RS10810	0.62	-2.9
155,078	+		BBR_RS10810	0.62	+1.6
155,084	+		BBR_RS10810	0.63	-0.1