Experiment: MoYLS4 media with N2 no edta
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2741 and DvMF_2742 overlap by 4 nucleotides DvMF_2742 and DvMF_2743 are separated by 12 nucleotides DvMF_2743 and DvMF_2744 are separated by 190 nucleotides
DvMF_2741: DvMF_2741 - type II and III secretion system protein (RefSeq), at 3,467,373 to 3,468,854
_2741
DvMF_2742: DvMF_2742 - Flp pilus assembly protein CpaB (RefSeq), at 3,468,851 to 3,469,675
_2742
DvMF_2743: DvMF_2743 - peptidase A24A prepilin type IV (RefSeq), at 3,469,688 to 3,470,278
_2743
DvMF_2744: DvMF_2744 - Flp/Fap pilin component (RefSeq), at 3,470,469 to 3,470,645
_2744
Position (kb)
3468
3469
3470 Strain fitness (log2 ratio)
-1
0
1 at 3468.131 kb on + strand, within DvMF_2741 at 3468.161 kb on - strand, within DvMF_2741 at 3468.186 kb on + strand, within DvMF_2741 at 3468.246 kb on - strand, within DvMF_2741 at 3468.282 kb on - strand, within DvMF_2741 at 3468.380 kb on + strand, within DvMF_2741 at 3468.387 kb on + strand, within DvMF_2741 at 3468.450 kb on - strand, within DvMF_2741 at 3468.563 kb on - strand, within DvMF_2741 at 3468.687 kb on - strand, within DvMF_2741 at 3468.774 kb on + strand at 3468.839 kb on - strand at 3469.019 kb on - strand, within DvMF_2742 at 3469.195 kb on + strand, within DvMF_2742 at 3469.455 kb on - strand, within DvMF_2742 at 3469.677 kb on + strand at 3469.717 kb on + strand at 3469.725 kb on - strand at 3469.761 kb on + strand, within DvMF_2743 at 3469.761 kb on + strand, within DvMF_2743 at 3469.761 kb on + strand, within DvMF_2743 at 3469.786 kb on - strand, within DvMF_2743 at 3469.858 kb on - strand, within DvMF_2743 at 3469.888 kb on - strand, within DvMF_2743 at 3470.099 kb on + strand, within DvMF_2743
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 media with N2 no edta remove 3,468,131 + DvMF_2741 0.51 -0.3 3,468,161 - DvMF_2741 0.53 +0.0 3,468,186 + DvMF_2741 0.55 -0.3 3,468,246 - DvMF_2741 0.59 -0.5 3,468,282 - DvMF_2741 0.61 +0.0 3,468,380 + DvMF_2741 0.68 -1.0 3,468,387 + DvMF_2741 0.68 -0.5 3,468,450 - DvMF_2741 0.73 -0.6 3,468,563 - DvMF_2741 0.80 -0.6 3,468,687 - DvMF_2741 0.89 +0.6 3,468,774 + -0.4 3,468,839 - -0.6 3,469,019 - DvMF_2742 0.20 -0.6 3,469,195 + DvMF_2742 0.42 +1.3 3,469,455 - DvMF_2742 0.73 +0.8 3,469,677 + -0.2 3,469,717 + -0.2 3,469,725 - -0.6 3,469,761 + DvMF_2743 0.12 -0.6 3,469,761 + DvMF_2743 0.12 -0.3 3,469,761 + DvMF_2743 0.12 -0.4 3,469,786 - DvMF_2743 0.17 -0.7 3,469,858 - DvMF_2743 0.29 -1.6 3,469,888 - DvMF_2743 0.34 -0.6 3,470,099 + DvMF_2743 0.70 -0.4
Or see this region's nucleotide sequence