Experiment: MoYLS4 media with N2 no edta
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2137 and DvMF_2138 are separated by 54 nucleotides DvMF_2138 and DvMF_2139 are separated by 190 nucleotides DvMF_2139 and DvMF_2140 are separated by 303 nucleotides
DvMF_2137: DvMF_2137 - TRAP dicarboxylate transporter, DctM subunit (RefSeq), at 2,661,228 to 2,662,511
_2137
DvMF_2138: DvMF_2138 - transcriptional regulator, LysR family (RefSeq), at 2,662,566 to 2,663,579
_2138
DvMF_2139: DvMF_2139 - hypothetical protein (RefSeq), at 2,663,770 to 2,663,901
_2139
DvMF_2140: DvMF_2140 - NAD(P)H dehydrogenase (quinone) (RefSeq), at 2,664,205 to 2,664,789
_2140
Position (kb)
2662
2663
2664 Strain fitness (log2 ratio)
-1
0
1 at 2661.713 kb on - strand, within DvMF_2137 at 2661.913 kb on + strand, within DvMF_2137 at 2662.588 kb on + strand at 2662.714 kb on + strand, within DvMF_2138 at 2663.388 kb on - strand, within DvMF_2138 at 2663.409 kb on + strand, within DvMF_2138 at 2663.417 kb on - strand, within DvMF_2138 at 2663.714 kb on + strand at 2663.731 kb on - strand at 2663.828 kb on + strand, within DvMF_2139 at 2663.877 kb on - strand, within DvMF_2139 at 2663.900 kb on - strand at 2664.228 kb on + strand at 2664.300 kb on - strand, within DvMF_2140 at 2664.347 kb on - strand, within DvMF_2140 at 2664.386 kb on + strand, within DvMF_2140 at 2664.491 kb on - strand, within DvMF_2140
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 media with N2 no edta remove 2,661,713 - DvMF_2137 0.38 -0.8 2,661,913 + DvMF_2137 0.53 +0.0 2,662,588 + -0.1 2,662,714 + DvMF_2138 0.15 +0.8 2,663,388 - DvMF_2138 0.81 -0.2 2,663,409 + DvMF_2138 0.83 +0.1 2,663,417 - DvMF_2138 0.84 -0.1 2,663,714 + -0.1 2,663,731 - -0.2 2,663,828 + DvMF_2139 0.44 +1.5 2,663,877 - DvMF_2139 0.81 +0.6 2,663,900 - -0.1 2,664,228 + -0.5 2,664,300 - DvMF_2140 0.16 +0.2 2,664,347 - DvMF_2140 0.24 -0.3 2,664,386 + DvMF_2140 0.31 +0.2 2,664,491 - DvMF_2140 0.49 +0.0
Or see this region's nucleotide sequence