Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2138

Experiment: MoYLS4 media with N2 no edta

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2137 and DvMF_2138 are separated by 54 nucleotidesDvMF_2138 and DvMF_2139 are separated by 190 nucleotidesDvMF_2139 and DvMF_2140 are separated by 303 nucleotides DvMF_2137: DvMF_2137 - TRAP dicarboxylate transporter, DctM subunit (RefSeq), at 2,661,228 to 2,662,511 _2137 DvMF_2138: DvMF_2138 - transcriptional regulator, LysR family (RefSeq), at 2,662,566 to 2,663,579 _2138 DvMF_2139: DvMF_2139 - hypothetical protein (RefSeq), at 2,663,770 to 2,663,901 _2139 DvMF_2140: DvMF_2140 - NAD(P)H dehydrogenase (quinone) (RefSeq), at 2,664,205 to 2,664,789 _2140 Position (kb) 2662 2663 2664Strain fitness (log2 ratio) -1 0 1at 2661.713 kb on - strand, within DvMF_2137at 2661.913 kb on + strand, within DvMF_2137at 2662.588 kb on + strandat 2662.714 kb on + strand, within DvMF_2138at 2663.388 kb on - strand, within DvMF_2138at 2663.409 kb on + strand, within DvMF_2138at 2663.417 kb on - strand, within DvMF_2138at 2663.714 kb on + strandat 2663.731 kb on - strandat 2663.828 kb on + strand, within DvMF_2139at 2663.877 kb on - strand, within DvMF_2139at 2663.900 kb on - strandat 2664.228 kb on + strandat 2664.300 kb on - strand, within DvMF_2140at 2664.347 kb on - strand, within DvMF_2140at 2664.386 kb on + strand, within DvMF_2140at 2664.491 kb on - strand, within DvMF_2140

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 media with N2 no edta
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2,661,713 - DvMF_2137 0.38 -0.8
2,661,913 + DvMF_2137 0.53 +0.0
2,662,588 + -0.1
2,662,714 + DvMF_2138 0.15 +0.8
2,663,388 - DvMF_2138 0.81 -0.2
2,663,409 + DvMF_2138 0.83 +0.1
2,663,417 - DvMF_2138 0.84 -0.1
2,663,714 + -0.1
2,663,731 - -0.2
2,663,828 + DvMF_2139 0.44 +1.5
2,663,877 - DvMF_2139 0.81 +0.6
2,663,900 - -0.1
2,664,228 + -0.5
2,664,300 - DvMF_2140 0.16 +0.2
2,664,347 - DvMF_2140 0.24 -0.3
2,664,386 + DvMF_2140 0.31 +0.2
2,664,491 - DvMF_2140 0.49 +0.0

Or see this region's nucleotide sequence