Experiment: MoYLS4 media with N2 no edta
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1929 and DvMF_1930 are separated by 120 nucleotides DvMF_1930 and DvMF_1931 are separated by 11 nucleotides DvMF_1931 and DvMF_1932 are separated by 84 nucleotides
DvMF_1929: DvMF_1929 - peptidase M24 (RefSeq), at 2,379,495 to 2,380,565
_1929
DvMF_1930: DvMF_1930 - protein of unknown function DUF336 (RefSeq), at 2,380,686 to 2,381,120
_1930
DvMF_1931: DvMF_1931 - TRAP dicarboxylate transporter, DctM subunit (RefSeq), at 2,381,132 to 2,383,054
_1931
DvMF_1932: DvMF_1932 - TRAP dicarboxylate transporter, DctP subunit (RefSeq), at 2,383,139 to 2,384,146
_1932
Position (kb)
2381
2382
2383
2384 Strain fitness (log2 ratio)
-1
0
1 at 2380.156 kb on - strand, within DvMF_1929 at 2380.187 kb on + strand, within DvMF_1929 at 2380.210 kb on + strand, within DvMF_1929 at 2380.210 kb on + strand, within DvMF_1929 at 2380.252 kb on + strand, within DvMF_1929 at 2380.260 kb on - strand, within DvMF_1929 at 2380.490 kb on + strand at 2380.661 kb on + strand at 2380.871 kb on + strand, within DvMF_1930 at 2380.906 kb on - strand, within DvMF_1930 at 2381.069 kb on - strand, within DvMF_1930 at 2381.130 kb on + strand at 2381.162 kb on - strand at 2381.190 kb on - strand at 2381.266 kb on + strand at 2381.266 kb on + strand at 2381.539 kb on + strand, within DvMF_1931 at 2381.901 kb on + strand, within DvMF_1931 at 2381.909 kb on - strand, within DvMF_1931 at 2381.945 kb on - strand, within DvMF_1931 at 2382.067 kb on + strand, within DvMF_1931 at 2382.276 kb on - strand, within DvMF_1931 at 2382.652 kb on + strand, within DvMF_1931 at 2382.668 kb on - strand, within DvMF_1931 at 2383.161 kb on + strand at 2383.201 kb on - strand at 2383.324 kb on + strand, within DvMF_1932 at 2383.494 kb on - strand, within DvMF_1932 at 2383.572 kb on - strand, within DvMF_1932 at 2383.644 kb on + strand, within DvMF_1932 at 2383.652 kb on - strand, within DvMF_1932 at 2383.786 kb on - strand, within DvMF_1932 at 2383.816 kb on - strand, within DvMF_1932 at 2383.838 kb on - strand, within DvMF_1932 at 2384.019 kb on - strand, within DvMF_1932
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 media with N2 no edta remove 2,380,156 - DvMF_1929 0.62 -1.1 2,380,187 + DvMF_1929 0.65 -1.1 2,380,210 + DvMF_1929 0.67 -0.7 2,380,210 + DvMF_1929 0.67 -1.0 2,380,252 + DvMF_1929 0.71 -0.9 2,380,260 - DvMF_1929 0.71 -1.1 2,380,490 + -0.9 2,380,661 + -0.2 2,380,871 + DvMF_1930 0.43 +0.3 2,380,906 - DvMF_1930 0.51 -0.4 2,381,069 - DvMF_1930 0.88 +0.4 2,381,130 + -0.3 2,381,162 - -0.6 2,381,190 - -0.5 2,381,266 + -0.8 2,381,266 + -0.5 2,381,539 + DvMF_1931 0.21 -0.7 2,381,901 + DvMF_1931 0.40 -1.1 2,381,909 - DvMF_1931 0.40 -0.3 2,381,945 - DvMF_1931 0.42 -0.4 2,382,067 + DvMF_1931 0.49 +0.4 2,382,276 - DvMF_1931 0.59 -0.4 2,382,652 + DvMF_1931 0.79 -0.5 2,382,668 - DvMF_1931 0.80 -0.6 2,383,161 + -0.6 2,383,201 - -0.5 2,383,324 + DvMF_1932 0.18 -0.5 2,383,494 - DvMF_1932 0.35 -0.4 2,383,572 - DvMF_1932 0.43 -0.5 2,383,644 + DvMF_1932 0.50 +0.1 2,383,652 - DvMF_1932 0.51 -0.6 2,383,786 - DvMF_1932 0.64 +0.0 2,383,816 - DvMF_1932 0.67 -0.1 2,383,838 - DvMF_1932 0.69 +0.8 2,384,019 - DvMF_1932 0.87 -0.6
Or see this region's nucleotide sequence