Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1895

Experiment: MoYLS4 media with N2 no edta

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_1894 and DvMF_1895 are separated by 156 nucleotidesDvMF_1895 and DvMF_1896 are separated by 144 nucleotides DvMF_1894: DvMF_1894 - N-acylneuraminate-9-phosphate synthase (RefSeq), at 2,331,689 to 2,332,753 _1894 DvMF_1895: DvMF_1895 - hypothetical protein (RefSeq), at 2,332,910 to 2,334,592 _1895 DvMF_1896: DvMF_1896 - transferase hexapeptide repeat containing protein (RefSeq), at 2,334,737 to 2,335,408 _1896 Position (kb) 2332 2333 2334 2335Strain fitness (log2 ratio) -1 0 1 2at 2332.027 kb on - strand, within DvMF_1894at 2332.458 kb on - strand, within DvMF_1894at 2332.667 kb on - strandat 2332.844 kb on - strandat 2333.054 kb on - strandat 2333.109 kb on - strand, within DvMF_1895at 2333.129 kb on - strand, within DvMF_1895at 2333.204 kb on - strand, within DvMF_1895at 2333.487 kb on + strand, within DvMF_1895at 2333.490 kb on - strand, within DvMF_1895at 2333.690 kb on - strand, within DvMF_1895at 2333.707 kb on + strand, within DvMF_1895at 2333.715 kb on - strand, within DvMF_1895at 2333.800 kb on - strand, within DvMF_1895at 2333.922 kb on - strand, within DvMF_1895at 2334.084 kb on + strand, within DvMF_1895at 2334.127 kb on + strand, within DvMF_1895at 2334.162 kb on - strand, within DvMF_1895at 2334.203 kb on - strand, within DvMF_1895at 2334.243 kb on + strand, within DvMF_1895at 2334.335 kb on - strand, within DvMF_1895at 2334.343 kb on - strand, within DvMF_1895at 2334.448 kb on + strandat 2334.470 kb on + strandat 2334.585 kb on + strandat 2334.783 kb on + strandat 2334.783 kb on + strandat 2335.049 kb on - strand, within DvMF_1896at 2335.341 kb on + strandat 2335.360 kb on - strandat 2335.572 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 media with N2 no edta
remove
2,332,027 - DvMF_1894 0.32 +0.1
2,332,458 - DvMF_1894 0.72 -0.1
2,332,667 - -0.2
2,332,844 - -0.3
2,333,054 - +0.7
2,333,109 - DvMF_1895 0.12 +0.1
2,333,129 - DvMF_1895 0.13 +0.4
2,333,204 - DvMF_1895 0.17 +0.5
2,333,487 + DvMF_1895 0.34 +0.1
2,333,490 - DvMF_1895 0.34 +0.6
2,333,690 - DvMF_1895 0.46 +0.7
2,333,707 + DvMF_1895 0.47 +0.3
2,333,715 - DvMF_1895 0.48 +0.5
2,333,800 - DvMF_1895 0.53 +0.6
2,333,922 - DvMF_1895 0.60 +0.5
2,334,084 + DvMF_1895 0.70 +1.8
2,334,127 + DvMF_1895 0.72 +0.3
2,334,162 - DvMF_1895 0.74 +0.3
2,334,203 - DvMF_1895 0.77 +0.3
2,334,243 + DvMF_1895 0.79 +0.3
2,334,335 - DvMF_1895 0.85 +0.1
2,334,343 - DvMF_1895 0.85 +0.4
2,334,448 + +0.2
2,334,470 + +0.4
2,334,585 + -0.3
2,334,783 + -1.1
2,334,783 + -0.6
2,335,049 - DvMF_1896 0.46 -0.2
2,335,341 + -0.7
2,335,360 - -0.2
2,335,572 - +0.3

Or see this region's nucleotide sequence