Experiment: MoYLS4 media with N2 no edta
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1850 and DvMF_1851 overlap by 4 nucleotides DvMF_1851 and DvMF_1852 are separated by 274 nucleotides DvMF_1852 and DvMF_1853 are separated by 191 nucleotides
DvMF_1850: DvMF_1850 - Capsule polysaccharide biosynthesis protein (RefSeq), at 2,262,005 to 2,263,510
_1850
DvMF_1851: DvMF_1851 - Methyltransferase type 11 (RefSeq), at 2,263,507 to 2,264,217
_1851
DvMF_1852: DvMF_1852 - glycosyl transferase family 2 (RefSeq), at 2,264,492 to 2,266,969
_1852
DvMF_1853: DvMF_1853 - glycosyl transferase group 1 (RefSeq), at 2,267,161 to 2,268,318
_1853
Position (kb)
2264
2265
2266
2267 Strain fitness (log2 ratio)
-1
0
1 at 2263.843 kb on + strand, within DvMF_1851 at 2263.921 kb on + strand, within DvMF_1851 at 2264.091 kb on + strand, within DvMF_1851 at 2264.158 kb on + strand at 2264.163 kb on + strand at 2264.428 kb on + strand at 2264.448 kb on + strand at 2264.477 kb on - strand at 2264.511 kb on - strand at 2264.570 kb on + strand at 2264.743 kb on + strand, within DvMF_1852 at 2264.743 kb on + strand, within DvMF_1852 at 2264.743 kb on + strand, within DvMF_1852 at 2264.826 kb on - strand, within DvMF_1852 at 2264.994 kb on - strand, within DvMF_1852 at 2265.123 kb on - strand, within DvMF_1852 at 2265.228 kb on + strand, within DvMF_1852 at 2265.236 kb on - strand, within DvMF_1852 at 2265.236 kb on - strand, within DvMF_1852 at 2265.309 kb on + strand, within DvMF_1852 at 2265.710 kb on + strand, within DvMF_1852 at 2265.715 kb on + strand, within DvMF_1852 at 2265.718 kb on - strand, within DvMF_1852 at 2265.856 kb on + strand, within DvMF_1852 at 2265.888 kb on - strand, within DvMF_1852 at 2265.962 kb on - strand, within DvMF_1852 at 2265.962 kb on - strand, within DvMF_1852 at 2266.189 kb on + strand, within DvMF_1852 at 2266.311 kb on + strand, within DvMF_1852 at 2266.316 kb on + strand, within DvMF_1852 at 2266.424 kb on - strand, within DvMF_1852 at 2266.574 kb on + strand, within DvMF_1852 at 2266.598 kb on + strand, within DvMF_1852 at 2266.627 kb on + strand, within DvMF_1852 at 2266.689 kb on - strand, within DvMF_1852 at 2266.854 kb on - strand at 2266.928 kb on + strand at 2266.972 kb on + strand at 2267.082 kb on - strand at 2267.128 kb on - strand at 2267.317 kb on + strand, within DvMF_1853 at 2267.446 kb on - strand, within DvMF_1853 at 2267.679 kb on - strand, within DvMF_1853 at 2267.842 kb on - strand, within DvMF_1853 at 2267.916 kb on + strand, within DvMF_1853 at 2267.937 kb on - strand, within DvMF_1853
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 media with N2 no edta remove 2,263,843 + DvMF_1851 0.47 -0.2 2,263,921 + DvMF_1851 0.58 +0.1 2,264,091 + DvMF_1851 0.82 -0.6 2,264,158 + -0.6 2,264,163 + +0.0 2,264,428 + -1.0 2,264,448 + -0.2 2,264,477 - -0.6 2,264,511 - -0.5 2,264,570 + -1.2 2,264,743 + DvMF_1852 0.10 +0.1 2,264,743 + DvMF_1852 0.10 -0.6 2,264,743 + DvMF_1852 0.10 -0.2 2,264,826 - DvMF_1852 0.13 -0.6 2,264,994 - DvMF_1852 0.20 -0.2 2,265,123 - DvMF_1852 0.25 -0.2 2,265,228 + DvMF_1852 0.30 -0.8 2,265,236 - DvMF_1852 0.30 -0.4 2,265,236 - DvMF_1852 0.30 -0.2 2,265,309 + DvMF_1852 0.33 +0.6 2,265,710 + DvMF_1852 0.49 -0.3 2,265,715 + DvMF_1852 0.49 +0.5 2,265,718 - DvMF_1852 0.49 -0.7 2,265,856 + DvMF_1852 0.55 -0.1 2,265,888 - DvMF_1852 0.56 -0.6 2,265,962 - DvMF_1852 0.59 -0.5 2,265,962 - DvMF_1852 0.59 -0.3 2,266,189 + DvMF_1852 0.68 +1.2 2,266,311 + DvMF_1852 0.73 -0.2 2,266,316 + DvMF_1852 0.74 -0.5 2,266,424 - DvMF_1852 0.78 +0.2 2,266,574 + DvMF_1852 0.84 -0.4 2,266,598 + DvMF_1852 0.85 -0.4 2,266,627 + DvMF_1852 0.86 -0.5 2,266,689 - DvMF_1852 0.89 -0.4 2,266,854 - -1.2 2,266,928 + -0.9 2,266,972 + +0.1 2,267,082 - -0.5 2,267,128 - -0.9 2,267,317 + DvMF_1853 0.13 -0.1 2,267,446 - DvMF_1853 0.25 -0.4 2,267,679 - DvMF_1853 0.45 -0.2 2,267,842 - DvMF_1853 0.59 -0.3 2,267,916 + DvMF_1853 0.65 -0.3 2,267,937 - DvMF_1853 0.67 -0.3
Or see this region's nucleotide sequence