Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1852

Experiment: MoYLS4 media with N2 no edta

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1850 and DvMF_1851 overlap by 4 nucleotidesDvMF_1851 and DvMF_1852 are separated by 274 nucleotidesDvMF_1852 and DvMF_1853 are separated by 191 nucleotides DvMF_1850: DvMF_1850 - Capsule polysaccharide biosynthesis protein (RefSeq), at 2,262,005 to 2,263,510 _1850 DvMF_1851: DvMF_1851 - Methyltransferase type 11 (RefSeq), at 2,263,507 to 2,264,217 _1851 DvMF_1852: DvMF_1852 - glycosyl transferase family 2 (RefSeq), at 2,264,492 to 2,266,969 _1852 DvMF_1853: DvMF_1853 - glycosyl transferase group 1 (RefSeq), at 2,267,161 to 2,268,318 _1853 Position (kb) 2264 2265 2266 2267Strain fitness (log2 ratio) -1 0 1at 2263.843 kb on + strand, within DvMF_1851at 2263.921 kb on + strand, within DvMF_1851at 2264.091 kb on + strand, within DvMF_1851at 2264.158 kb on + strandat 2264.163 kb on + strandat 2264.428 kb on + strandat 2264.448 kb on + strandat 2264.477 kb on - strandat 2264.511 kb on - strandat 2264.570 kb on + strandat 2264.743 kb on + strand, within DvMF_1852at 2264.743 kb on + strand, within DvMF_1852at 2264.743 kb on + strand, within DvMF_1852at 2264.826 kb on - strand, within DvMF_1852at 2264.994 kb on - strand, within DvMF_1852at 2265.123 kb on - strand, within DvMF_1852at 2265.228 kb on + strand, within DvMF_1852at 2265.236 kb on - strand, within DvMF_1852at 2265.236 kb on - strand, within DvMF_1852at 2265.309 kb on + strand, within DvMF_1852at 2265.710 kb on + strand, within DvMF_1852at 2265.715 kb on + strand, within DvMF_1852at 2265.718 kb on - strand, within DvMF_1852at 2265.856 kb on + strand, within DvMF_1852at 2265.888 kb on - strand, within DvMF_1852at 2265.962 kb on - strand, within DvMF_1852at 2265.962 kb on - strand, within DvMF_1852at 2266.189 kb on + strand, within DvMF_1852at 2266.311 kb on + strand, within DvMF_1852at 2266.316 kb on + strand, within DvMF_1852at 2266.424 kb on - strand, within DvMF_1852at 2266.574 kb on + strand, within DvMF_1852at 2266.598 kb on + strand, within DvMF_1852at 2266.627 kb on + strand, within DvMF_1852at 2266.689 kb on - strand, within DvMF_1852at 2266.854 kb on - strandat 2266.928 kb on + strandat 2266.972 kb on + strandat 2267.082 kb on - strandat 2267.128 kb on - strandat 2267.317 kb on + strand, within DvMF_1853at 2267.446 kb on - strand, within DvMF_1853at 2267.679 kb on - strand, within DvMF_1853at 2267.842 kb on - strand, within DvMF_1853at 2267.916 kb on + strand, within DvMF_1853at 2267.937 kb on - strand, within DvMF_1853

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 media with N2 no edta
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2,263,843 + DvMF_1851 0.47 -0.2
2,263,921 + DvMF_1851 0.58 +0.1
2,264,091 + DvMF_1851 0.82 -0.6
2,264,158 + -0.6
2,264,163 + +0.0
2,264,428 + -1.0
2,264,448 + -0.2
2,264,477 - -0.6
2,264,511 - -0.5
2,264,570 + -1.2
2,264,743 + DvMF_1852 0.10 +0.1
2,264,743 + DvMF_1852 0.10 -0.6
2,264,743 + DvMF_1852 0.10 -0.2
2,264,826 - DvMF_1852 0.13 -0.6
2,264,994 - DvMF_1852 0.20 -0.2
2,265,123 - DvMF_1852 0.25 -0.2
2,265,228 + DvMF_1852 0.30 -0.8
2,265,236 - DvMF_1852 0.30 -0.4
2,265,236 - DvMF_1852 0.30 -0.2
2,265,309 + DvMF_1852 0.33 +0.6
2,265,710 + DvMF_1852 0.49 -0.3
2,265,715 + DvMF_1852 0.49 +0.5
2,265,718 - DvMF_1852 0.49 -0.7
2,265,856 + DvMF_1852 0.55 -0.1
2,265,888 - DvMF_1852 0.56 -0.6
2,265,962 - DvMF_1852 0.59 -0.5
2,265,962 - DvMF_1852 0.59 -0.3
2,266,189 + DvMF_1852 0.68 +1.2
2,266,311 + DvMF_1852 0.73 -0.2
2,266,316 + DvMF_1852 0.74 -0.5
2,266,424 - DvMF_1852 0.78 +0.2
2,266,574 + DvMF_1852 0.84 -0.4
2,266,598 + DvMF_1852 0.85 -0.4
2,266,627 + DvMF_1852 0.86 -0.5
2,266,689 - DvMF_1852 0.89 -0.4
2,266,854 - -1.2
2,266,928 + -0.9
2,266,972 + +0.1
2,267,082 - -0.5
2,267,128 - -0.9
2,267,317 + DvMF_1853 0.13 -0.1
2,267,446 - DvMF_1853 0.25 -0.4
2,267,679 - DvMF_1853 0.45 -0.2
2,267,842 - DvMF_1853 0.59 -0.3
2,267,916 + DvMF_1853 0.65 -0.3
2,267,937 - DvMF_1853 0.67 -0.3

Or see this region's nucleotide sequence