Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1209

Experiment: MoYLS4 media with N2 no edta

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1208 and DvMF_1209 are separated by 287 nucleotidesDvMF_1209 and DvMF_1210 are separated by 292 nucleotidesDvMF_1210 and DvMF_1211 are separated by 283 nucleotides DvMF_1208: DvMF_1208 - CheW protein (RefSeq), at 1,486,679 to 1,487,218 _1208 DvMF_1209: DvMF_1209 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 1,487,506 to 1,489,485 _1209 DvMF_1210: DvMF_1210 - hypothetical protein (RefSeq), at 1,489,778 to 1,490,086 _1210 DvMF_1211: DvMF_1211 - response regulator receiver protein (RefSeq), at 1,490,370 to 1,490,801 _1211 Position (kb) 1487 1488 1489 1490Strain fitness (log2 ratio) -1 0 1at 1486.679 kb on - strandat 1487.629 kb on - strandat 1487.629 kb on - strandat 1487.899 kb on - strand, within DvMF_1209at 1487.901 kb on + strand, within DvMF_1209at 1488.268 kb on - strand, within DvMF_1209at 1488.526 kb on + strand, within DvMF_1209at 1488.759 kb on - strand, within DvMF_1209at 1488.904 kb on - strand, within DvMF_1209at 1488.914 kb on - strand, within DvMF_1209at 1489.041 kb on + strand, within DvMF_1209at 1489.149 kb on - strand, within DvMF_1209at 1489.215 kb on + strand, within DvMF_1209at 1489.219 kb on - strand, within DvMF_1209at 1489.494 kb on - strandat 1489.571 kb on - strandat 1489.640 kb on + strandat 1489.688 kb on - strandat 1489.698 kb on - strandat 1489.703 kb on - strandat 1489.741 kb on - strandat 1489.794 kb on - strandat 1489.813 kb on + strand, within DvMF_1210at 1489.908 kb on - strand, within DvMF_1210at 1490.015 kb on - strand, within DvMF_1210at 1490.080 kb on + strandat 1490.089 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 media with N2 no edta
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1,486,679 - -0.6
1,487,629 - -0.2
1,487,629 - -0.5
1,487,899 - DvMF_1209 0.20 -0.4
1,487,901 + DvMF_1209 0.20 -0.1
1,488,268 - DvMF_1209 0.38 -1.4
1,488,526 + DvMF_1209 0.52 -0.3
1,488,759 - DvMF_1209 0.63 -0.4
1,488,904 - DvMF_1209 0.71 -0.1
1,488,914 - DvMF_1209 0.71 -0.5
1,489,041 + DvMF_1209 0.78 +0.0
1,489,149 - DvMF_1209 0.83 -0.4
1,489,215 + DvMF_1209 0.86 -0.2
1,489,219 - DvMF_1209 0.87 -0.5
1,489,494 - -0.6
1,489,571 - -0.3
1,489,640 + +1.0
1,489,688 - +0.2
1,489,698 - -0.8
1,489,703 - -0.1
1,489,741 - -0.5
1,489,794 - -0.5
1,489,813 + DvMF_1210 0.11 +0.4
1,489,908 - DvMF_1210 0.42 +0.2
1,490,015 - DvMF_1210 0.77 +0.5
1,490,080 + +1.3
1,490,089 - -0.6

Or see this region's nucleotide sequence