Experiment: MoYLS4 media with N2 no edta
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0344 and DvMF_0345 are separated by 124 nucleotides DvMF_0345 and DvMF_0346 are separated by 74 nucleotides DvMF_0346 and DvMF_0347 are separated by 163 nucleotides
DvMF_0344: DvMF_0344 - rod shape-determining protein MreB (RefSeq), at 403,148 to 404,170
_0344
DvMF_0345: DvMF_0345 - Inositol-phosphate phosphatase (RefSeq), at 404,295 to 405,161
_0345
DvMF_0346: DvMF_0346 - NUDIX hydrolase (RefSeq), at 405,236 to 405,784
_0346
DvMF_0347: DvMF_0347 - ribosomal-protein-alanine acetyltransferase (RefSeq), at 405,948 to 406,526
_0347
Position (kb) 404
405
406 Strain fitness (log2 ratio) -1
0
1 at 403.649 kb on - strand, within DvMF_0344 at 404.120 kb on + strand at 404.151 kb on + strand at 404.206 kb on + strand at 404.861 kb on - strand, within DvMF_0345 at 405.204 kb on + strand at 405.234 kb on + strand at 405.242 kb on - strand at 405.315 kb on + strand, within DvMF_0346 at 405.336 kb on + strand, within DvMF_0346 at 405.618 kb on + strand, within DvMF_0346 at 405.618 kb on + strand, within DvMF_0346 at 405.683 kb on + strand, within DvMF_0346 at 405.691 kb on - strand, within DvMF_0346 at 405.809 kb on - strand at 405.809 kb on - strand at 405.953 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 media with N2 no edta remove 403,649 - DvMF_0344 0.49 +0.3 404,120 + -0.6 404,151 + -1.6 404,206 + -0.3 404,861 - DvMF_0345 0.65 +0.4 405,204 + -0.2 405,234 + -0.6 405,242 - +0.3 405,315 + DvMF_0346 0.14 -0.3 405,336 + DvMF_0346 0.18 +0.3 405,618 + DvMF_0346 0.70 +0.7 405,618 + DvMF_0346 0.70 -0.4 405,683 + DvMF_0346 0.81 +1.1 405,691 - DvMF_0346 0.83 -0.0 405,809 - -0.6 405,809 - -0.1 405,953 + -0.0
Or see this region's nucleotide sequence