Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT1878

Experiment: BHIS with Dimethyl Sulfoxide 0.1 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Dimethyl Sulfoxide 0.1 vol%
2,361,831	-		BT1876	0.81	-0.0
2,361,841	+		BT1876	0.82	-1.6
2,361,842	-		BT1876	0.82	-0.6
2,361,902	-		BT1876	0.88	-1.4
2,361,902	-		BT1876	0.88	-2.8
2,361,939	+				-2.4
2,361,980	-				-1.6
2,362,002	-				-1.0
2,362,128	-				+1.0
2,362,157	-		BT1877	0.11	-1.0
2,362,180	-		BT1877	0.15	-1.5
2,362,191	+		BT1877	0.17	-2.0
2,362,296	-		BT1877	0.34	-1.8
2,362,297	+		BT1877	0.35	+1.0
2,362,329	+		BT1877	0.40	-3.2
2,362,403	-		BT1877	0.52	-1.0
2,362,469	+		BT1877	0.64	-1.4
2,362,508	-		BT1877	0.70	-2.4
2,362,530	+		BT1877	0.74	-0.4
2,362,586	+		BT1877	0.83	-0.5
2,362,613	+		BT1877	0.88	-1.0
2,362,614	-		BT1877	0.88	-1.5
2,362,614	-		BT1877	0.88	-0.0
2,362,614	-		BT1877	0.88	+1.0
2,362,615	+		BT1877	0.88	-1.6
2,362,616	-		BT1877	0.88	-0.0
2,362,619	+		BT1877	0.89	-1.4
2,362,619	+		BT1877	0.89	+1.0
2,362,663	+				-1.1
2,362,689	+				-2.8
2,362,689	+				-0.0
2,362,689	+				-1.3
2,362,690	-				-1.0
2,362,702	-				-0.7
2,362,724	-				-0.4
2,362,740	+				-0.0
2,362,741	-				+0.2
2,362,742	+				-0.0
2,362,792	+				-0.6
2,362,796	-				-2.0
2,362,802	+				-0.4
2,362,802	+				-1.8
2,362,803	-				-2.0
2,362,812	-				-2.0
2,362,812	-				-1.8
2,362,812	-				-1.0
2,362,822	-				-1.1
2,362,824	-				-1.1
2,362,825	+				-1.6
2,362,826	-				-2.0
2,362,834	-				-2.0
2,362,878	-				+1.0
2,362,902	+				-0.0
2,362,910	+				-0.7
2,362,910	+				-0.0
2,362,911	-				-0.8
2,362,911	-				-0.5
2,362,911	-				-1.6
2,362,914	+				-1.0
2,362,948	-				-0.5
2,362,972	+				-3.4
2,362,973	-				-0.6
2,362,973	-				-2.0
2,363,005	+				-1.0
2,363,009	+				+1.6
2,363,058	+		BT1878	0.11	-0.0
2,363,058	+		BT1878	0.11	-0.0
2,363,058	+		BT1878	0.11	-0.0
2,363,058	+		BT1878	0.11	-2.0
2,363,059	-		BT1878	0.11	-1.7
2,363,059	-		BT1878	0.11	-3.0
2,363,061	-		BT1878	0.11	-2.0
2,363,118	+		BT1878	0.14	-1.0
2,363,120	+		BT1878	0.14	-1.0
2,363,184	-		BT1878	0.17	+1.4
2,363,186	-		BT1878	0.17	-1.1
2,363,189	+		BT1878	0.17	-2.8
2,363,190	-		BT1878	0.17	-0.5
2,363,194	-		BT1878	0.17	-2.4
2,363,226	-		BT1878	0.19	-0.0
2,363,365	-		BT1878	0.25	-2.0
2,363,390	+		BT1878	0.26	-1.7
2,363,391	-		BT1878	0.26	-1.8
2,363,434	-		BT1878	0.28	-0.6
2,363,434	-		BT1878	0.28	-0.0
2,363,510	+				-0.0
2,363,556	+		BT1878	0.34	-1.8
2,363,583	-		BT1878	0.35	-3.8
2,363,591	+		BT1878	0.35	-2.1
2,363,591	+		BT1878	0.35	-1.6
2,363,591	+		BT1878	0.35	-1.0
2,363,591	+		BT1878	0.35	-0.5
2,363,661	+		BT1878	0.39	-1.6
2,363,662	-		BT1878	0.39	-1.6
2,363,664	-		BT1878	0.39	-2.4
2,363,696	-		BT1878	0.40	-2.0
2,363,852	-		BT1878	0.47	-1.0
2,363,913	+		BT1878	0.50	-2.6
2,363,914	-		BT1878	0.50	-0.0
2,363,915	+		BT1878	0.50	-1.1
2,363,915	+		BT1878	0.50	-2.0
2,363,940	+		BT1878	0.51	-1.2
2,363,964	-		BT1878	0.52	-2.4
2,364,007	-		BT1878	0.54	-1.1
2,364,015	+		BT1878	0.55	-1.0
2,364,016	-		BT1878	0.55	-0.0
2,364,069	+		BT1878	0.57	-1.0
2,364,329	-		BT1878	0.69	-1.6
2,364,362	+		BT1878	0.70	-0.5
2,364,362	+		BT1878	0.70	-0.0
2,364,363	-		BT1878	0.71	-1.2
2,364,438	-		BT1878	0.74	-0.6
2,364,455	+		BT1878	0.75	+0.6
2,364,456	-		BT1878	0.75	-1.0
2,364,456	-		BT1878	0.75	-2.4
2,364,524	+		BT1878	0.78	-2.4
2,364,528	+		BT1878	0.78	-3.0
2,364,528	-		BT1878	0.78	-2.0
2,364,529	-		BT1878	0.78	-0.0
2,364,529	-		BT1878	0.78	-1.6
2,364,529	-		BT1878	0.78	-0.5
2,364,600	+		BT1878	0.81	-0.9
2,364,603	-		BT1878	0.81	-0.0
2,364,603	-		BT1878	0.81	-1.0
2,364,775	-		BT1878	0.89	-1.5
2,364,799	+				-1.7
2,364,800	-				-3.2
2,364,827	-				-2.0
2,364,861	+				-3.2
2,364,862	-				-1.9
2,364,950	+				-0.0
2,365,011	+				-0.0
2,365,056	+				-1.8
2,365,113	+				-0.0
2,365,257	+				-2.8
2,365,259	+				-3.4
2,365,259	+				-0.7
2,365,322	+				-0.0
2,365,329	+				-1.6
2,365,361	+				-1.6
2,365,361	+				-1.3
2,365,430	+				-1.5
2,365,461	+		BT1879	0.11	-1.4
2,365,494	+		BT1879	0.13	+1.3
2,365,494	+		BT1879	0.13	-2.4
2,365,671	+		BT1879	0.23	-0.0
2,365,690	+		BT1879	0.24	-2.4
2,365,787	+		BT1879	0.30	-1.0
2,365,821	+		BT1879	0.31	+0.1
2,365,826	+		BT1879	0.32	-1.8
2,365,826	+		BT1879	0.32	-1.4
2,365,830	+		BT1879	0.32	-0.8
2,365,834	+		BT1879	0.32	-0.0
2,365,982	+		BT1879	0.41	-2.0
2,365,982	+		BT1879	0.41	-0.8