Experiment: MoLS4 with L-Homoserine as nutrient 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dvsB and dsrD are separated by 61 nucleotides dsrD and cobB-1 are separated by 115 nucleotides cobB-1 and DVU0406 are separated by 477 nucleotides
DVU0403: dvsB - dissimilatory sulfite reductase beta subunit (TIGR), at 451,220 to 452,365
dvsB
DVU0404: dsrD - dissimilatory sulfite reductase D (Shelley Haveman), at 452,427 to 452,663
dsrD
DVU0405: cobB-1 - cobyrinic acid a,c-diamide synthase (TIGR), at 452,779 to 454,185
cobB-1
DVU0406: DVU0406 - membrane protein, putative (TIGR), at 454,663 to 455,601
DVU0406
Position (kb) 452
453
454
455 Strain fitness (log2 ratio) -1
0
1 at 452.744 kb on - strand at 452.776 kb on + strand at 454.143 kb on + strand at 454.190 kb on + strand at 454.208 kb on - strand at 454.334 kb on - strand at 454.374 kb on + strand at 454.419 kb on - strand at 454.459 kb on + strand at 454.542 kb on - strand at 454.553 kb on + strand at 454.596 kb on - strand at 454.639 kb on - strand at 454.685 kb on - strand at 454.796 kb on + strand, within DVU0406 at 454.813 kb on - strand, within DVU0406 at 454.821 kb on - strand, within DVU0406 at 454.882 kb on + strand, within DVU0406 at 454.959 kb on + strand, within DVU0406 at 454.990 kb on - strand, within DVU0406 at 454.993 kb on + strand, within DVU0406 at 455.000 kb on + strand, within DVU0406 at 455.102 kb on - strand, within DVU0406 at 455.184 kb on - strand, within DVU0406 at 455.184 kb on - strand, within DVU0406
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Homoserine as nutrient 10mM remove 452,744 - -1.6 452,776 + +0.0 454,143 + +0.0 454,190 + +0.8 454,208 - +0.8 454,334 - -1.2 454,374 + +0.1 454,419 - -0.5 454,459 + +0.2 454,542 - +0.0 454,553 + -0.1 454,596 - -0.8 454,639 - +1.1 454,685 - -0.2 454,796 + DVU0406 0.14 -0.9 454,813 - DVU0406 0.16 -1.1 454,821 - DVU0406 0.17 +0.4 454,882 + DVU0406 0.23 -0.2 454,959 + DVU0406 0.32 -1.0 454,990 - DVU0406 0.35 -0.9 454,993 + DVU0406 0.35 -0.6 455,000 + DVU0406 0.36 -0.2 455,102 - DVU0406 0.47 +0.1 455,184 - DVU0406 0.55 +1.2 455,184 - DVU0406 0.55 +0.3
Or see this region's nucleotide sequence