Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1087

Experiment: MoLS4 with L-Homoserine as nutrient 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntphoU and DVU1086 are separated by 427 nucleotidesDVU1086 and DVU1087 are separated by 3 nucleotidesDVU1087 and DVU1088 are separated by 46 nucleotidesDVU1088 and alaS are separated by 379 nucleotides DVU1085: phoU - phosphate transport system protein PhoU (TIGR), at 1,188,620 to 1,189,285 phoU DVU1086: DVU1086 - hypothetical protein (TIGR), at 1,189,713 to 1,190,192 DVU1086 DVU1087: DVU1087 - conserved hypothetical protein (TIGR), at 1,190,196 to 1,191,176 DVU1087 DVU1088: DVU1088 - hypothetical protein (TIGR), at 1,191,223 to 1,191,399 DVU1088 DVU1089: alaS - alanyl-tRNA synthetase (TIGR), at 1,191,779 to 1,194,418 alaS Position (kb) 1190 1191 1192Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1189.280 kb on + strandat 1189.336 kb on - strandat 1189.390 kb on - strandat 1189.514 kb on - strandat 1189.627 kb on + strandat 1189.627 kb on + strandat 1189.653 kb on + strandat 1189.789 kb on + strand, within DVU1086at 1189.848 kb on + strand, within DVU1086at 1189.911 kb on + strand, within DVU1086at 1189.963 kb on + strand, within DVU1086at 1189.966 kb on - strand, within DVU1086at 1190.011 kb on - strand, within DVU1086at 1190.063 kb on - strand, within DVU1086at 1190.084 kb on + strand, within DVU1086at 1190.084 kb on + strand, within DVU1086at 1190.106 kb on + strand, within DVU1086at 1190.186 kb on + strandat 1190.215 kb on - strandat 1190.537 kb on - strand, within DVU1087at 1190.640 kb on + strand, within DVU1087at 1190.768 kb on - strand, within DVU1087at 1190.773 kb on - strand, within DVU1087at 1190.915 kb on + strand, within DVU1087at 1190.938 kb on - strand, within DVU1087at 1190.985 kb on - strand, within DVU1087at 1191.028 kb on - strand, within DVU1087at 1191.083 kb on + strandat 1191.083 kb on + strandat 1191.109 kb on + strandat 1191.112 kb on - strandat 1191.117 kb on - strandat 1191.117 kb on - strandat 1191.284 kb on + strand, within DVU1088at 1191.402 kb on - strandat 1191.402 kb on - strandat 1191.402 kb on - strandat 1191.427 kb on + strandat 1191.435 kb on - strandat 1191.446 kb on - strandat 1191.472 kb on + strandat 1191.480 kb on - strandat 1191.514 kb on - strandat 1191.665 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Homoserine as nutrient 10mM
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1,189,280 + +2.8
1,189,336 - +0.9
1,189,390 - -0.0
1,189,514 - -0.2
1,189,627 + +0.5
1,189,627 + -0.4
1,189,653 + +0.2
1,189,789 + DVU1086 0.16 -0.2
1,189,848 + DVU1086 0.28 +0.0
1,189,911 + DVU1086 0.41 -0.3
1,189,963 + DVU1086 0.52 -0.1
1,189,966 - DVU1086 0.53 -1.2
1,190,011 - DVU1086 0.62 +1.0
1,190,063 - DVU1086 0.73 -1.0
1,190,084 + DVU1086 0.77 -0.1
1,190,084 + DVU1086 0.77 -1.5
1,190,106 + DVU1086 0.82 +0.3
1,190,186 + +0.5
1,190,215 - -0.4
1,190,537 - DVU1087 0.35 -1.1
1,190,640 + DVU1087 0.45 -1.1
1,190,768 - DVU1087 0.58 +0.3
1,190,773 - DVU1087 0.59 -1.4
1,190,915 + DVU1087 0.73 -1.4
1,190,938 - DVU1087 0.76 -1.5
1,190,985 - DVU1087 0.80 -1.5
1,191,028 - DVU1087 0.85 -1.6
1,191,083 + -2.1
1,191,083 + -1.6
1,191,109 + -1.5
1,191,112 - -1.6
1,191,117 - -0.3
1,191,117 - -1.5
1,191,284 + DVU1088 0.34 -1.6
1,191,402 - +0.8
1,191,402 - -0.0
1,191,402 - -0.8
1,191,427 + -0.2
1,191,435 - +0.2
1,191,446 - +0.1
1,191,472 + -0.2
1,191,480 - +0.3
1,191,514 - +0.4
1,191,665 + -1.5

Or see this region's nucleotide sequence