Experiment: KB with 4-hydroxychalcone 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4282 and Psyr_4283 are separated by 474 nucleotides Psyr_4283 and Psyr_4284 overlap by 4 nucleotides Psyr_4284 and Psyr_4285 overlap by 4 nucleotides
Psyr_4282: Psyr_4282 - cytochrome bd quinol oxidase subunit 1 apoprotein, at 5,105,606 to 5,107,045
_4282
Psyr_4283: Psyr_4283 - xanthine dehydrogenase, molybdenum binding subunit apoprotein, at 5,107,520 to 5,109,721
_4283
Psyr_4284: Psyr_4284 - Molybdopterin dehydrogenase, FAD-binding:CO dehydrogenase flavoprotein, C-terminal, at 5,109,718 to 5,110,707
_4284
Psyr_4285: Psyr_4285 - Ferredoxin:[2Fe-2S]-binding protein, at 5,110,704 to 5,111,234
_4285
Position (kb) 5107
5108
5109
5110 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 5106.747 kb on + strand, within Psyr_4282 at 5106.747 kb on + strand, within Psyr_4282 at 5106.748 kb on - strand, within Psyr_4282 at 5106.748 kb on - strand, within Psyr_4282 at 5106.748 kb on - strand, within Psyr_4282 at 5106.748 kb on - strand, within Psyr_4282 at 5106.885 kb on + strand, within Psyr_4282 at 5106.885 kb on + strand, within Psyr_4282 at 5106.886 kb on - strand, within Psyr_4282 at 5106.897 kb on + strand, within Psyr_4282 at 5106.945 kb on + strand at 5106.945 kb on + strand at 5106.946 kb on - strand at 5107.025 kb on + strand at 5107.025 kb on + strand at 5107.025 kb on + strand at 5107.025 kb on + strand at 5107.025 kb on + strand at 5107.025 kb on + strand at 5107.025 kb on + strand at 5107.025 kb on + strand at 5107.025 kb on + strand at 5107.025 kb on + strand at 5107.025 kb on + strand at 5107.025 kb on + strand at 5107.025 kb on + strand at 5107.025 kb on + strand at 5107.025 kb on + strand at 5107.025 kb on + strand at 5107.025 kb on + strand at 5107.025 kb on + strand at 5107.025 kb on + strand at 5107.025 kb on + strand at 5107.026 kb on - strand at 5107.026 kb on - strand at 5107.026 kb on - strand at 5107.026 kb on - strand at 5107.026 kb on - strand at 5107.026 kb on - strand at 5107.026 kb on - strand at 5107.026 kb on - strand at 5107.026 kb on - strand at 5107.026 kb on - strand at 5107.026 kb on - strand at 5107.026 kb on - strand at 5107.028 kb on - strand at 5107.045 kb on + strand at 5107.045 kb on + strand at 5107.045 kb on + strand at 5107.045 kb on + strand at 5107.045 kb on + strand at 5107.045 kb on + strand at 5107.045 kb on + strand at 5107.045 kb on + strand at 5107.045 kb on + strand at 5107.045 kb on + strand at 5107.045 kb on + strand at 5107.045 kb on + strand at 5107.045 kb on + strand at 5107.045 kb on + strand at 5107.045 kb on + strand at 5107.045 kb on + strand at 5107.045 kb on + strand at 5107.046 kb on - strand at 5107.046 kb on - strand at 5107.046 kb on - strand at 5107.046 kb on - strand at 5107.046 kb on - strand at 5107.046 kb on - strand at 5107.046 kb on - strand at 5107.046 kb on - strand at 5107.046 kb on - strand at 5107.046 kb on - strand at 5107.046 kb on - strand at 5107.046 kb on - strand at 5107.121 kb on + strand at 5107.121 kb on + strand at 5107.121 kb on + strand at 5107.121 kb on + strand at 5107.121 kb on + strand at 5107.121 kb on + strand at 5107.122 kb on - strand at 5107.122 kb on - strand at 5107.122 kb on - strand at 5107.122 kb on - strand at 5107.122 kb on - strand at 5107.122 kb on - strand at 5107.122 kb on - strand at 5107.131 kb on + strand at 5107.195 kb on + strand at 5107.196 kb on - strand at 5107.196 kb on - strand at 5107.196 kb on - strand at 5107.237 kb on + strand at 5107.252 kb on + strand at 5107.298 kb on + strand at 5107.378 kb on + strand at 5107.531 kb on + strand at 5107.558 kb on + strand at 5107.578 kb on + strand at 5107.578 kb on + strand at 5107.578 kb on + strand at 5107.579 kb on - strand at 5107.579 kb on - strand at 5107.579 kb on - strand at 5107.579 kb on - strand at 5107.945 kb on + strand, within Psyr_4283 at 5107.945 kb on + strand, within Psyr_4283 at 5107.946 kb on - strand, within Psyr_4283 at 5107.956 kb on + strand, within Psyr_4283 at 5108.061 kb on + strand, within Psyr_4283 at 5108.061 kb on + strand, within Psyr_4283 at 5108.061 kb on + strand, within Psyr_4283 at 5108.061 kb on + strand, within Psyr_4283 at 5108.061 kb on + strand, within Psyr_4283 at 5108.061 kb on + strand, within Psyr_4283 at 5108.061 kb on + strand, within Psyr_4283 at 5108.061 kb on + strand, within Psyr_4283 at 5108.062 kb on - strand, within Psyr_4283 at 5108.062 kb on - strand, within Psyr_4283 at 5108.062 kb on - strand, within Psyr_4283 at 5108.062 kb on - strand, within Psyr_4283 at 5108.062 kb on - strand, within Psyr_4283 at 5108.062 kb on - strand, within Psyr_4283 at 5108.141 kb on + strand, within Psyr_4283 at 5108.142 kb on - strand, within Psyr_4283 at 5108.313 kb on + strand, within Psyr_4283 at 5108.313 kb on + strand, within Psyr_4283 at 5108.313 kb on + strand, within Psyr_4283 at 5108.314 kb on - strand, within Psyr_4283 at 5108.314 kb on - strand, within Psyr_4283 at 5108.314 kb on - strand, within Psyr_4283 at 5108.314 kb on - strand, within Psyr_4283 at 5108.314 kb on - strand, within Psyr_4283 at 5108.314 kb on - strand, within Psyr_4283 at 5108.517 kb on + strand at 5108.518 kb on - strand, within Psyr_4283 at 5108.561 kb on - strand, within Psyr_4283 at 5108.577 kb on + strand, within Psyr_4283 at 5108.577 kb on + strand, within Psyr_4283 at 5108.578 kb on - strand, within Psyr_4283 at 5108.578 kb on - strand, within Psyr_4283 at 5108.721 kb on + strand, within Psyr_4283 at 5108.721 kb on + strand, within Psyr_4283 at 5108.721 kb on + strand, within Psyr_4283 at 5108.721 kb on + strand, within Psyr_4283 at 5108.722 kb on - strand, within Psyr_4283 at 5108.722 kb on - strand, within Psyr_4283 at 5108.722 kb on - strand, within Psyr_4283 at 5108.748 kb on + strand, within Psyr_4283 at 5108.748 kb on + strand, within Psyr_4283 at 5108.748 kb on + strand, within Psyr_4283 at 5108.749 kb on - strand, within Psyr_4283 at 5108.749 kb on - strand, within Psyr_4283 at 5108.979 kb on + strand, within Psyr_4283 at 5109.072 kb on + strand, within Psyr_4283 at 5109.072 kb on + strand, within Psyr_4283 at 5109.073 kb on - strand, within Psyr_4283 at 5109.073 kb on - strand, within Psyr_4283 at 5109.073 kb on - strand, within Psyr_4283 at 5109.073 kb on - strand, within Psyr_4283 at 5109.135 kb on + strand, within Psyr_4283 at 5109.136 kb on - strand, within Psyr_4283 at 5109.175 kb on - strand, within Psyr_4283 at 5109.175 kb on - strand, within Psyr_4283 at 5109.175 kb on - strand, within Psyr_4283 at 5109.192 kb on + strand, within Psyr_4283 at 5109.192 kb on + strand, within Psyr_4283 at 5109.192 kb on + strand, within Psyr_4283 at 5109.192 kb on + strand, within Psyr_4283 at 5109.192 kb on + strand, within Psyr_4283 at 5109.192 kb on + strand, within Psyr_4283 at 5109.193 kb on - strand, within Psyr_4283 at 5109.193 kb on - strand, within Psyr_4283 at 5109.193 kb on - strand, within Psyr_4283 at 5109.276 kb on + strand, within Psyr_4283 at 5109.328 kb on - strand, within Psyr_4283 at 5109.408 kb on + strand, within Psyr_4283 at 5109.408 kb on + strand, within Psyr_4283 at 5109.408 kb on + strand, within Psyr_4283 at 5109.408 kb on + strand, within Psyr_4283 at 5109.409 kb on - strand, within Psyr_4283 at 5109.409 kb on - strand, within Psyr_4283 at 5109.409 kb on - strand, within Psyr_4283 at 5109.409 kb on - strand, within Psyr_4283 at 5109.409 kb on - strand, within Psyr_4283 at 5109.409 kb on - strand, within Psyr_4283 at 5109.409 kb on - strand, within Psyr_4283 at 5109.409 kb on - strand, within Psyr_4283 at 5109.409 kb on - strand, within Psyr_4283 at 5109.426 kb on + strand, within Psyr_4283 at 5109.427 kb on - strand, within Psyr_4283 at 5109.471 kb on + strand, within Psyr_4283 at 5109.471 kb on + strand, within Psyr_4283 at 5109.472 kb on - strand, within Psyr_4283 at 5109.472 kb on - strand, within Psyr_4283 at 5109.472 kb on - strand, within Psyr_4283 at 5109.472 kb on - strand, within Psyr_4283 at 5109.483 kb on + strand, within Psyr_4283 at 5109.483 kb on + strand, within Psyr_4283 at 5109.484 kb on - strand, within Psyr_4283 at 5109.484 kb on - strand, within Psyr_4283 at 5109.609 kb on + strand at 5109.609 kb on + strand at 5109.610 kb on - strand at 5109.610 kb on - strand at 5109.610 kb on - strand at 5109.631 kb on - strand at 5110.004 kb on + strand, within Psyr_4284 at 5110.004 kb on + strand, within Psyr_4284 at 5110.005 kb on - strand, within Psyr_4284 at 5110.031 kb on + strand, within Psyr_4284 at 5110.032 kb on - strand, within Psyr_4284 at 5110.032 kb on - strand, within Psyr_4284 at 5110.346 kb on + strand, within Psyr_4284 at 5110.346 kb on + strand, within Psyr_4284 at 5110.346 kb on + strand, within Psyr_4284 at 5110.347 kb on - strand, within Psyr_4284 at 5110.347 kb on - strand, within Psyr_4284 at 5110.347 kb on - strand, within Psyr_4284 at 5110.352 kb on + strand, within Psyr_4284 at 5110.352 kb on + strand, within Psyr_4284 at 5110.352 kb on + strand, within Psyr_4284 at 5110.352 kb on + strand, within Psyr_4284 at 5110.352 kb on + strand, within Psyr_4284 at 5110.353 kb on - strand, within Psyr_4284 at 5110.353 kb on - strand, within Psyr_4284 at 5110.353 kb on - strand, within Psyr_4284 at 5110.356 kb on - strand, within Psyr_4284 at 5110.356 kb on - strand, within Psyr_4284 at 5110.691 kb on + strand at 5110.691 kb on + strand at 5110.691 kb on + strand at 5110.691 kb on + strand at 5110.692 kb on - strand at 5110.692 kb on - strand at 5110.692 kb on - strand at 5110.696 kb on - strand at 5110.696 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with 4-hydroxychalcone 10 mM remove 5,106,747 + Psyr_4282 0.79 +0.9 5,106,747 + Psyr_4282 0.79 -0.3 5,106,748 - Psyr_4282 0.79 -0.6 5,106,748 - Psyr_4282 0.79 +2.7 5,106,748 - Psyr_4282 0.79 -0.9 5,106,748 - Psyr_4282 0.79 -1.5 5,106,885 + Psyr_4282 0.89 +0.0 5,106,885 + Psyr_4282 0.89 +0.6 5,106,886 - Psyr_4282 0.89 +1.4 5,106,897 + Psyr_4282 0.90 +0.5 5,106,945 + -1.4 5,106,945 + -1.3 5,106,946 - +0.1 5,107,025 + -2.1 5,107,025 + -1.6 5,107,025 + -0.6 5,107,025 + -1.9 5,107,025 + +0.8 5,107,025 + -0.1 5,107,025 + +3.9 5,107,025 + -0.1 5,107,025 + -2.4 5,107,025 + +0.7 5,107,025 + -1.7 5,107,025 + +0.8 5,107,025 + -1.1 5,107,025 + -0.3 5,107,025 + +0.1 5,107,025 + +1.0 5,107,025 + -1.1 5,107,025 + +0.6 5,107,025 + -0.3 5,107,025 + +0.8 5,107,026 - -0.2 5,107,026 - -1.5 5,107,026 - +3.7 5,107,026 - +0.4 5,107,026 - -2.1 5,107,026 - +0.3 5,107,026 - -0.4 5,107,026 - -0.9 5,107,026 - -0.5 5,107,026 - -0.1 5,107,026 - +2.3 5,107,026 - -0.4 5,107,028 - -2.4 5,107,045 + +1.0 5,107,045 + +0.5 5,107,045 + +3.1 5,107,045 + -0.5 5,107,045 + +0.6 5,107,045 + -0.2 5,107,045 + -1.1 5,107,045 + -0.6 5,107,045 + +0.0 5,107,045 + -0.2 5,107,045 + -0.1 5,107,045 + +1.4 5,107,045 + -0.5 5,107,045 + +0.6 5,107,045 + +1.8 5,107,045 + -0.8 5,107,045 + -0.9 5,107,046 - -1.0 5,107,046 - -0.1 5,107,046 - -1.7 5,107,046 - +0.1 5,107,046 - +1.3 5,107,046 - +0.7 5,107,046 - +1.7 5,107,046 - +0.5 5,107,046 - -0.3 5,107,046 - +0.2 5,107,046 - +0.4 5,107,046 - -0.1 5,107,121 + -0.7 5,107,121 + +0.2 5,107,121 + -1.5 5,107,121 + -1.5 5,107,121 + +0.1 5,107,121 + -0.1 5,107,122 - +0.1 5,107,122 - -0.3 5,107,122 - -1.1 5,107,122 - -0.8 5,107,122 - -0.1 5,107,122 - +0.8 5,107,122 - +0.1 5,107,131 + +0.6 5,107,195 + +1.1 5,107,196 - -0.4 5,107,196 - -1.2 5,107,196 - -1.2 5,107,237 + +0.5 5,107,252 + -0.3 5,107,298 + +1.0 5,107,378 + +0.8 5,107,531 + -0.9 5,107,558 + -0.4 5,107,578 + -0.0 5,107,578 + -1.9 5,107,578 + +0.4 5,107,579 - -1.9 5,107,579 - +0.7 5,107,579 - +0.0 5,107,579 - -0.1 5,107,945 + Psyr_4283 0.19 -1.0 5,107,945 + Psyr_4283 0.19 +2.5 5,107,946 - Psyr_4283 0.19 -1.9 5,107,956 + Psyr_4283 0.20 -0.2 5,108,061 + Psyr_4283 0.25 +0.3 5,108,061 + Psyr_4283 0.25 +2.1 5,108,061 + Psyr_4283 0.25 -1.4 5,108,061 + Psyr_4283 0.25 +1.4 5,108,061 + Psyr_4283 0.25 +0.1 5,108,061 + Psyr_4283 0.25 +0.0 5,108,061 + Psyr_4283 0.25 +0.9 5,108,061 + Psyr_4283 0.25 -1.0 5,108,062 - Psyr_4283 0.25 -0.0 5,108,062 - Psyr_4283 0.25 +0.4 5,108,062 - Psyr_4283 0.25 +0.9 5,108,062 - Psyr_4283 0.25 -0.6 5,108,062 - Psyr_4283 0.25 +0.6 5,108,062 - Psyr_4283 0.25 +0.9 5,108,141 + Psyr_4283 0.28 +0.2 5,108,142 - Psyr_4283 0.28 +0.4 5,108,313 + Psyr_4283 0.36 -1.4 5,108,313 + Psyr_4283 0.36 +1.9 5,108,313 + Psyr_4283 0.36 +0.1 5,108,314 - Psyr_4283 0.36 +0.3 5,108,314 - Psyr_4283 0.36 +1.1 5,108,314 - Psyr_4283 0.36 -0.2 5,108,314 - Psyr_4283 0.36 +0.3 5,108,314 - Psyr_4283 0.36 +0.5 5,108,314 - Psyr_4283 0.36 -0.1 5,108,517 + +0.1 5,108,518 - Psyr_4283 0.45 +0.4 5,108,561 - Psyr_4283 0.47 +1.1 5,108,577 + Psyr_4283 0.48 -1.8 5,108,577 + Psyr_4283 0.48 -0.7 5,108,578 - Psyr_4283 0.48 +0.4 5,108,578 - Psyr_4283 0.48 +0.0 5,108,721 + Psyr_4283 0.55 -0.6 5,108,721 + Psyr_4283 0.55 +0.1 5,108,721 + Psyr_4283 0.55 +1.4 5,108,721 + Psyr_4283 0.55 +0.1 5,108,722 - Psyr_4283 0.55 -0.1 5,108,722 - Psyr_4283 0.55 +0.5 5,108,722 - Psyr_4283 0.55 +0.4 5,108,748 + Psyr_4283 0.56 -0.4 5,108,748 + Psyr_4283 0.56 +0.3 5,108,748 + Psyr_4283 0.56 +0.4 5,108,749 - Psyr_4283 0.56 +0.5 5,108,749 - Psyr_4283 0.56 +1.2 5,108,979 + Psyr_4283 0.66 +0.6 5,109,072 + Psyr_4283 0.70 +0.4 5,109,072 + Psyr_4283 0.70 +0.7 5,109,073 - Psyr_4283 0.71 +0.2 5,109,073 - Psyr_4283 0.71 +0.7 5,109,073 - Psyr_4283 0.71 -0.1 5,109,073 - Psyr_4283 0.71 +0.8 5,109,135 + Psyr_4283 0.73 -0.3 5,109,136 - Psyr_4283 0.73 -1.0 5,109,175 - Psyr_4283 0.75 +0.6 5,109,175 - Psyr_4283 0.75 -1.0 5,109,175 - Psyr_4283 0.75 +0.7 5,109,192 + Psyr_4283 0.76 +0.4 5,109,192 + Psyr_4283 0.76 +1.4 5,109,192 + Psyr_4283 0.76 -0.2 5,109,192 + Psyr_4283 0.76 +0.3 5,109,192 + Psyr_4283 0.76 -0.1 5,109,192 + Psyr_4283 0.76 -0.1 5,109,193 - Psyr_4283 0.76 -0.4 5,109,193 - Psyr_4283 0.76 +1.3 5,109,193 - Psyr_4283 0.76 +0.1 5,109,276 + Psyr_4283 0.80 -0.6 5,109,328 - Psyr_4283 0.82 -0.8 5,109,408 + Psyr_4283 0.86 -2.4 5,109,408 + Psyr_4283 0.86 -0.1 5,109,408 + Psyr_4283 0.86 -0.1 5,109,408 + Psyr_4283 0.86 +0.3 5,109,409 - Psyr_4283 0.86 +0.1 5,109,409 - Psyr_4283 0.86 +3.1 5,109,409 - Psyr_4283 0.86 +0.6 5,109,409 - Psyr_4283 0.86 +1.5 5,109,409 - Psyr_4283 0.86 -1.9 5,109,409 - Psyr_4283 0.86 -0.1 5,109,409 - Psyr_4283 0.86 +0.5 5,109,409 - Psyr_4283 0.86 +0.2 5,109,409 - Psyr_4283 0.86 -0.4 5,109,426 + Psyr_4283 0.87 +1.3 5,109,427 - Psyr_4283 0.87 -0.7 5,109,471 + Psyr_4283 0.89 +2.4 5,109,471 + Psyr_4283 0.89 -0.9 5,109,472 - Psyr_4283 0.89 -0.2 5,109,472 - Psyr_4283 0.89 +1.4 5,109,472 - Psyr_4283 0.89 -1.4 5,109,472 - Psyr_4283 0.89 -0.8 5,109,483 + Psyr_4283 0.89 -0.3 5,109,483 + Psyr_4283 0.89 +2.2 5,109,484 - Psyr_4283 0.89 -0.0 5,109,484 - Psyr_4283 0.89 -1.8 5,109,609 + +1.3 5,109,609 + +1.2 5,109,610 - +0.8 5,109,610 - +1.4 5,109,610 - -1.7 5,109,631 - +0.3 5,110,004 + Psyr_4284 0.29 +0.6 5,110,004 + Psyr_4284 0.29 -0.1 5,110,005 - Psyr_4284 0.29 +0.3 5,110,031 + Psyr_4284 0.32 -0.9 5,110,032 - Psyr_4284 0.32 -0.6 5,110,032 - Psyr_4284 0.32 -0.2 5,110,346 + Psyr_4284 0.63 +1.1 5,110,346 + Psyr_4284 0.63 +1.5 5,110,346 + Psyr_4284 0.63 +0.9 5,110,347 - Psyr_4284 0.64 -0.1 5,110,347 - Psyr_4284 0.64 -0.3 5,110,347 - Psyr_4284 0.64 +0.6 5,110,352 + Psyr_4284 0.64 +0.4 5,110,352 + Psyr_4284 0.64 +1.5 5,110,352 + Psyr_4284 0.64 +2.1 5,110,352 + Psyr_4284 0.64 +0.2 5,110,352 + Psyr_4284 0.64 -0.6 5,110,353 - Psyr_4284 0.64 -0.7 5,110,353 - Psyr_4284 0.64 -0.3 5,110,353 - Psyr_4284 0.64 -1.4 5,110,356 - Psyr_4284 0.64 +0.1 5,110,356 - Psyr_4284 0.64 -0.2 5,110,691 + -0.1 5,110,691 + +0.0 5,110,691 + -2.2 5,110,691 + +0.5 5,110,692 - +0.0 5,110,692 - -2.4 5,110,692 - +0.1 5,110,696 - +2.0 5,110,696 - +0.2
Or see this region's nucleotide sequence