Experiment: KB with 4-hydroxychalcone 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3676 and Psyr_3677 overlap by 4 nucleotides Psyr_3677 and Psyr_3678 overlap by 8 nucleotides Psyr_3678 and Psyr_3679 overlap by 4 nucleotides
Psyr_3676: Psyr_3676 - adenosylcobyric acid synthase (glutamine-hydrolysing), at 4,361,979 to 4,363,439
_3676
Psyr_3677: Psyr_3677 - Aminotransferase, class I and II, at 4,363,436 to 4,364,440
_3677
Psyr_3678: Psyr_3678 - adenosylcobinamide-phosphate synthase, at 4,364,433 to 4,365,341
_3678
Psyr_3679: Psyr_3679 - cob(II)yrinic acid a,c-diamide reductase, at 4,365,338 to 4,365,988
_3679
Position (kb) 4363
4364
4365 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4362.526 kb on + strand, within Psyr_3676 at 4362.527 kb on - strand, within Psyr_3676 at 4362.527 kb on - strand, within Psyr_3676 at 4362.660 kb on - strand, within Psyr_3676 at 4362.767 kb on - strand, within Psyr_3676 at 4363.067 kb on - strand, within Psyr_3676 at 4363.121 kb on + strand, within Psyr_3676 at 4363.122 kb on - strand, within Psyr_3676 at 4363.122 kb on - strand, within Psyr_3676 at 4363.422 kb on + strand at 4363.423 kb on - strand at 4363.423 kb on - strand at 4363.423 kb on - strand at 4363.423 kb on - strand at 4363.423 kb on - strand at 4363.443 kb on + strand at 4363.443 kb on + strand at 4364.082 kb on + strand, within Psyr_3677 at 4364.102 kb on + strand, within Psyr_3677 at 4364.102 kb on + strand, within Psyr_3677 at 4364.103 kb on - strand, within Psyr_3677 at 4364.259 kb on + strand, within Psyr_3677 at 4364.259 kb on + strand, within Psyr_3677 at 4364.260 kb on - strand, within Psyr_3677 at 4364.260 kb on - strand, within Psyr_3677 at 4364.260 kb on - strand, within Psyr_3677 at 4364.475 kb on + strand at 4364.578 kb on + strand, within Psyr_3678 at 4364.745 kb on - strand, within Psyr_3678 at 4364.746 kb on + strand, within Psyr_3678 at 4364.746 kb on + strand, within Psyr_3678 at 4364.746 kb on + strand, within Psyr_3678 at 4364.746 kb on + strand, within Psyr_3678 at 4364.746 kb on + strand, within Psyr_3678 at 4364.746 kb on + strand, within Psyr_3678 at 4364.746 kb on + strand, within Psyr_3678 at 4364.747 kb on - strand, within Psyr_3678 at 4364.747 kb on - strand, within Psyr_3678 at 4364.747 kb on - strand, within Psyr_3678 at 4364.747 kb on - strand, within Psyr_3678 at 4364.747 kb on - strand, within Psyr_3678 at 4364.747 kb on - strand, within Psyr_3678 at 4364.747 kb on - strand, within Psyr_3678 at 4364.747 kb on - strand, within Psyr_3678 at 4364.747 kb on - strand, within Psyr_3678 at 4364.747 kb on - strand, within Psyr_3678 at 4364.747 kb on - strand, within Psyr_3678 at 4364.831 kb on + strand, within Psyr_3678 at 4364.831 kb on + strand, within Psyr_3678 at 4365.366 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with 4-hydroxychalcone 10 mM remove 4,362,526 + Psyr_3676 0.37 -1.1 4,362,527 - Psyr_3676 0.38 -0.4 4,362,527 - Psyr_3676 0.38 +0.3 4,362,660 - Psyr_3676 0.47 -0.5 4,362,767 - Psyr_3676 0.54 -1.1 4,363,067 - Psyr_3676 0.74 +0.1 4,363,121 + Psyr_3676 0.78 -0.6 4,363,122 - Psyr_3676 0.78 -1.1 4,363,122 - Psyr_3676 0.78 +3.0 4,363,422 + -0.2 4,363,423 - -0.0 4,363,423 - +2.0 4,363,423 - +0.8 4,363,423 - -0.3 4,363,423 - +1.6 4,363,443 + +0.4 4,363,443 + +0.7 4,364,082 + Psyr_3677 0.64 -0.0 4,364,102 + Psyr_3677 0.66 -1.8 4,364,102 + Psyr_3677 0.66 -3.1 4,364,103 - Psyr_3677 0.66 -0.3 4,364,259 + Psyr_3677 0.82 -0.8 4,364,259 + Psyr_3677 0.82 -2.4 4,364,260 - Psyr_3677 0.82 -1.3 4,364,260 - Psyr_3677 0.82 +1.0 4,364,260 - Psyr_3677 0.82 -2.2 4,364,475 + -1.8 4,364,578 + Psyr_3678 0.16 -1.6 4,364,745 - Psyr_3678 0.34 -1.8 4,364,746 + Psyr_3678 0.34 +3.0 4,364,746 + Psyr_3678 0.34 -1.6 4,364,746 + Psyr_3678 0.34 -2.8 4,364,746 + Psyr_3678 0.34 -0.6 4,364,746 + Psyr_3678 0.34 -2.8 4,364,746 + Psyr_3678 0.34 -1.4 4,364,746 + Psyr_3678 0.34 -1.6 4,364,747 - Psyr_3678 0.35 -2.5 4,364,747 - Psyr_3678 0.35 +1.0 4,364,747 - Psyr_3678 0.35 +0.6 4,364,747 - Psyr_3678 0.35 +2.2 4,364,747 - Psyr_3678 0.35 -0.7 4,364,747 - Psyr_3678 0.35 -0.1 4,364,747 - Psyr_3678 0.35 +1.0 4,364,747 - Psyr_3678 0.35 +0.8 4,364,747 - Psyr_3678 0.35 -0.2 4,364,747 - Psyr_3678 0.35 -0.5 4,364,747 - Psyr_3678 0.35 -0.8 4,364,831 + Psyr_3678 0.44 -0.9 4,364,831 + Psyr_3678 0.44 +2.0 4,365,366 + -1.5
Or see this region's nucleotide sequence