Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1590

Experiment: KB with 4-hydroxychalcone 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_RNA26 and Psyr_RNA27 are separated by 21 nucleotidesPsyr_RNA27 and Psyr_1589 are separated by 360 nucleotidesPsyr_1589 and Psyr_1590 are separated by 125 nucleotidesPsyr_1590 and Psyr_1591 are separated by 55 nucleotidesPsyr_1591 and Psyr_1592 are separated by 32 nucleotides Psyr_RNA26: Psyr_RNA26 - tRNA-Val, at 1,788,216 to 1,788,291 _RNA26 Psyr_RNA27: Psyr_RNA27 - tRNA-Asp, at 1,788,313 to 1,788,389 _RNA27 Psyr_1589: Psyr_1589 - conserved hypothetical protein, at 1,788,750 to 1,789,145 _1589 Psyr_1590: Psyr_1590 - L-carnitine dehydratase/bile acid-inducible protein F, at 1,789,271 to 1,790,461 _1590 Psyr_1591: Psyr_1591 - Glyoxalase/bleomycin resistance protein/dioxygenase, at 1,790,517 to 1,790,909 _1591 Psyr_1592: Psyr_1592 - conserved hypothetical protein, at 1,790,942 to 1,791,460 _1592 Position (kb) 1789 1790 1791Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1788.549 kb on + strandat 1788.549 kb on + strandat 1788.586 kb on + strandat 1788.627 kb on + strandat 1788.630 kb on + strandat 1788.631 kb on - strandat 1788.631 kb on - strandat 1788.687 kb on - strandat 1788.765 kb on - strandat 1788.775 kb on + strandat 1788.775 kb on + strandat 1788.775 kb on + strandat 1788.776 kb on - strandat 1788.823 kb on + strand, within Psyr_1589at 1788.893 kb on - strand, within Psyr_1589at 1788.897 kb on + strand, within Psyr_1589at 1788.916 kb on - strand, within Psyr_1589at 1788.927 kb on + strand, within Psyr_1589at 1788.927 kb on + strand, within Psyr_1589at 1788.928 kb on - strand, within Psyr_1589at 1788.928 kb on - strand, within Psyr_1589at 1789.020 kb on + strand, within Psyr_1589at 1789.069 kb on + strand, within Psyr_1589at 1789.069 kb on + strand, within Psyr_1589at 1789.079 kb on + strand, within Psyr_1589at 1789.079 kb on + strand, within Psyr_1589at 1789.079 kb on + strand, within Psyr_1589at 1789.080 kb on - strand, within Psyr_1589at 1789.080 kb on - strand, within Psyr_1589at 1789.139 kb on + strandat 1789.139 kb on + strandat 1789.140 kb on - strandat 1789.542 kb on + strand, within Psyr_1590at 1789.542 kb on + strand, within Psyr_1590at 1789.542 kb on + strand, within Psyr_1590at 1789.542 kb on + strand, within Psyr_1590at 1789.542 kb on + strand, within Psyr_1590at 1789.542 kb on + strand, within Psyr_1590at 1789.542 kb on + strand, within Psyr_1590at 1789.542 kb on + strand, within Psyr_1590at 1789.543 kb on - strand, within Psyr_1590at 1789.543 kb on - strand, within Psyr_1590at 1789.857 kb on + strand, within Psyr_1590at 1789.857 kb on + strand, within Psyr_1590at 1789.857 kb on + strandat 1789.857 kb on + strand, within Psyr_1590at 1789.857 kb on + strand, within Psyr_1590at 1789.857 kb on + strand, within Psyr_1590at 1789.857 kb on + strand, within Psyr_1590at 1789.857 kb on + strand, within Psyr_1590at 1789.857 kb on + strand, within Psyr_1590at 1789.857 kb on + strand, within Psyr_1590at 1789.857 kb on + strand, within Psyr_1590at 1789.857 kb on + strand, within Psyr_1590at 1789.858 kb on - strand, within Psyr_1590at 1789.858 kb on - strand, within Psyr_1590at 1789.858 kb on - strand, within Psyr_1590at 1789.858 kb on - strand, within Psyr_1590at 1789.858 kb on - strand, within Psyr_1590at 1789.858 kb on - strand, within Psyr_1590at 1789.858 kb on - strand, within Psyr_1590at 1789.858 kb on - strand, within Psyr_1590at 1789.871 kb on + strand, within Psyr_1590at 1789.871 kb on + strand, within Psyr_1590at 1789.871 kb on + strand, within Psyr_1590at 1789.872 kb on - strand, within Psyr_1590at 1789.872 kb on - strand, within Psyr_1590at 1789.872 kb on - strand, within Psyr_1590at 1790.003 kb on + strand, within Psyr_1590at 1790.004 kb on - strand, within Psyr_1590at 1790.032 kb on + strand, within Psyr_1590at 1790.033 kb on - strand, within Psyr_1590at 1790.033 kb on - strand, within Psyr_1590at 1790.204 kb on - strand, within Psyr_1590at 1790.222 kb on + strand, within Psyr_1590at 1790.255 kb on + strand, within Psyr_1590at 1790.320 kb on + strand, within Psyr_1590at 1790.320 kb on + strand, within Psyr_1590at 1790.356 kb on - strandat 1790.356 kb on - strandat 1790.455 kb on + strandat 1790.496 kb on - strandat 1790.542 kb on + strandat 1790.542 kb on + strandat 1790.580 kb on + strand, within Psyr_1591at 1790.580 kb on + strand, within Psyr_1591at 1790.584 kb on + strand, within Psyr_1591at 1790.584 kb on + strand, within Psyr_1591at 1790.585 kb on - strand, within Psyr_1591at 1790.844 kb on + strand, within Psyr_1591at 1790.844 kb on + strand, within Psyr_1591at 1790.844 kb on + strand, within Psyr_1591at 1790.844 kb on + strand, within Psyr_1591at 1790.844 kb on + strand, within Psyr_1591at 1790.844 kb on + strand, within Psyr_1591at 1790.845 kb on - strand, within Psyr_1591at 1790.845 kb on - strand, within Psyr_1591at 1790.845 kb on - strand, within Psyr_1591at 1790.845 kb on - strand, within Psyr_1591at 1790.845 kb on - strand, within Psyr_1591at 1790.845 kb on - strand, within Psyr_1591at 1790.845 kb on - strand, within Psyr_1591at 1790.907 kb on + strandat 1790.908 kb on - strandat 1790.908 kb on - strandat 1791.012 kb on + strand, within Psyr_1592at 1791.012 kb on + strand, within Psyr_1592at 1791.012 kb on + strand, within Psyr_1592at 1791.012 kb on + strand, within Psyr_1592at 1791.012 kb on + strand, within Psyr_1592at 1791.012 kb on + strand, within Psyr_1592at 1791.012 kb on + strand, within Psyr_1592at 1791.012 kb on + strand, within Psyr_1592at 1791.012 kb on + strand, within Psyr_1592at 1791.012 kb on + strand, within Psyr_1592at 1791.012 kb on + strand, within Psyr_1592at 1791.012 kb on + strand, within Psyr_1592at 1791.012 kb on + strand, within Psyr_1592at 1791.012 kb on + strand, within Psyr_1592at 1791.013 kb on - strand, within Psyr_1592at 1791.013 kb on - strand, within Psyr_1592at 1791.013 kb on - strand, within Psyr_1592at 1791.013 kb on - strand, within Psyr_1592at 1791.013 kb on - strand, within Psyr_1592at 1791.013 kb on - strand, within Psyr_1592at 1791.013 kb on - strand, within Psyr_1592at 1791.013 kb on - strand, within Psyr_1592at 1791.013 kb on - strand, within Psyr_1592at 1791.013 kb on - strand, within Psyr_1592at 1791.013 kb on - strand, within Psyr_1592at 1791.013 kb on - strand, within Psyr_1592at 1791.013 kb on - strand, within Psyr_1592at 1791.013 kb on - strand, within Psyr_1592at 1791.013 kb on - strand, within Psyr_1592at 1791.013 kb on - strand, within Psyr_1592at 1791.086 kb on + strand, within Psyr_1592at 1791.086 kb on + strand, within Psyr_1592at 1791.086 kb on + strand, within Psyr_1592at 1791.086 kb on + strand, within Psyr_1592at 1791.087 kb on - strand, within Psyr_1592at 1791.087 kb on - strand, within Psyr_1592at 1791.087 kb on - strand, within Psyr_1592at 1791.087 kb on - strand, within Psyr_1592at 1791.087 kb on - strand, within Psyr_1592at 1791.087 kb on - strand, within Psyr_1592at 1791.162 kb on + strand, within Psyr_1592at 1791.162 kb on + strand, within Psyr_1592at 1791.162 kb on + strand, within Psyr_1592at 1791.163 kb on - strand, within Psyr_1592at 1791.163 kb on - strand, within Psyr_1592at 1791.357 kb on + strand, within Psyr_1592at 1791.358 kb on - strand, within Psyr_1592at 1791.461 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with 4-hydroxychalcone 10 mM
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1,788,549 + +0.1
1,788,549 + -1.5
1,788,586 + -1.1
1,788,627 + +1.3
1,788,630 + +0.4
1,788,631 - +0.7
1,788,631 - +0.5
1,788,687 - -0.7
1,788,765 - -1.2
1,788,775 + +0.2
1,788,775 + -0.0
1,788,775 + +1.5
1,788,776 - -0.3
1,788,823 + Psyr_1589 0.18 -0.2
1,788,893 - Psyr_1589 0.36 +1.3
1,788,897 + Psyr_1589 0.37 +2.1
1,788,916 - Psyr_1589 0.42 -1.2
1,788,927 + Psyr_1589 0.45 +0.1
1,788,927 + Psyr_1589 0.45 -0.7
1,788,928 - Psyr_1589 0.45 +0.1
1,788,928 - Psyr_1589 0.45 -0.6
1,789,020 + Psyr_1589 0.68 -0.6
1,789,069 + Psyr_1589 0.81 -1.5
1,789,069 + Psyr_1589 0.81 -0.8
1,789,079 + Psyr_1589 0.83 -0.1
1,789,079 + Psyr_1589 0.83 -0.4
1,789,079 + Psyr_1589 0.83 -0.6
1,789,080 - Psyr_1589 0.83 -1.7
1,789,080 - Psyr_1589 0.83 -1.7
1,789,139 + +0.2
1,789,139 + -0.7
1,789,140 - +0.1
1,789,542 + Psyr_1590 0.23 +1.0
1,789,542 + Psyr_1590 0.23 -0.2
1,789,542 + Psyr_1590 0.23 -0.4
1,789,542 + Psyr_1590 0.23 -1.3
1,789,542 + Psyr_1590 0.23 -0.6
1,789,542 + Psyr_1590 0.23 +0.7
1,789,542 + Psyr_1590 0.23 -3.8
1,789,542 + Psyr_1590 0.23 -0.5
1,789,543 - Psyr_1590 0.23 -1.2
1,789,543 - Psyr_1590 0.23 -1.3
1,789,857 + Psyr_1590 0.49 +1.1
1,789,857 + Psyr_1590 0.49 +0.5
1,789,857 + -1.3
1,789,857 + Psyr_1590 0.49 +3.4
1,789,857 + Psyr_1590 0.49 -0.2
1,789,857 + Psyr_1590 0.49 +0.2
1,789,857 + Psyr_1590 0.49 +1.6
1,789,857 + Psyr_1590 0.49 +0.8
1,789,857 + Psyr_1590 0.49 +0.1
1,789,857 + Psyr_1590 0.49 +0.1
1,789,857 + Psyr_1590 0.49 -0.9
1,789,857 + Psyr_1590 0.49 +1.1
1,789,858 - Psyr_1590 0.49 +0.8
1,789,858 - Psyr_1590 0.49 +1.4
1,789,858 - Psyr_1590 0.49 +0.4
1,789,858 - Psyr_1590 0.49 -0.3
1,789,858 - Psyr_1590 0.49 +1.4
1,789,858 - Psyr_1590 0.49 -0.1
1,789,858 - Psyr_1590 0.49 +0.7
1,789,858 - Psyr_1590 0.49 +3.1
1,789,871 + Psyr_1590 0.50 +1.3
1,789,871 + Psyr_1590 0.50 +0.1
1,789,871 + Psyr_1590 0.50 -0.5
1,789,872 - Psyr_1590 0.50 -1.3
1,789,872 - Psyr_1590 0.50 +0.2
1,789,872 - Psyr_1590 0.50 +1.6
1,790,003 + Psyr_1590 0.61 -0.7
1,790,004 - Psyr_1590 0.62 +0.1
1,790,032 + Psyr_1590 0.64 -2.0
1,790,033 - Psyr_1590 0.64 -0.9
1,790,033 - Psyr_1590 0.64 +1.4
1,790,204 - Psyr_1590 0.78 +2.4
1,790,222 + Psyr_1590 0.80 +0.2
1,790,255 + Psyr_1590 0.83 +0.1
1,790,320 + Psyr_1590 0.88 +1.2
1,790,320 + Psyr_1590 0.88 +0.5
1,790,356 - -1.9
1,790,356 - +0.1
1,790,455 + +1.3
1,790,496 - -1.4
1,790,542 + -0.3
1,790,542 + -1.1
1,790,580 + Psyr_1591 0.16 -0.1
1,790,580 + Psyr_1591 0.16 +0.6
1,790,584 + Psyr_1591 0.17 +0.8
1,790,584 + Psyr_1591 0.17 -1.1
1,790,585 - Psyr_1591 0.17 +0.5
1,790,844 + Psyr_1591 0.83 +0.9
1,790,844 + Psyr_1591 0.83 +0.6
1,790,844 + Psyr_1591 0.83 +2.6
1,790,844 + Psyr_1591 0.83 -0.5
1,790,844 + Psyr_1591 0.83 +0.5
1,790,844 + Psyr_1591 0.83 -0.2
1,790,845 - Psyr_1591 0.83 +0.7
1,790,845 - Psyr_1591 0.83 -0.3
1,790,845 - Psyr_1591 0.83 +1.1
1,790,845 - Psyr_1591 0.83 +0.3
1,790,845 - Psyr_1591 0.83 -0.6
1,790,845 - Psyr_1591 0.83 -0.2
1,790,845 - Psyr_1591 0.83 +0.7
1,790,907 + +0.7
1,790,908 - +2.1
1,790,908 - -0.3
1,791,012 + Psyr_1592 0.13 -0.8
1,791,012 + Psyr_1592 0.13 +0.4
1,791,012 + Psyr_1592 0.13 +0.9
1,791,012 + Psyr_1592 0.13 -0.0
1,791,012 + Psyr_1592 0.13 +2.4
1,791,012 + Psyr_1592 0.13 -0.6
1,791,012 + Psyr_1592 0.13 +1.2
1,791,012 + Psyr_1592 0.13 +0.2
1,791,012 + Psyr_1592 0.13 -0.7
1,791,012 + Psyr_1592 0.13 -0.7
1,791,012 + Psyr_1592 0.13 -1.3
1,791,012 + Psyr_1592 0.13 +0.1
1,791,012 + Psyr_1592 0.13 +0.8
1,791,012 + Psyr_1592 0.13 -0.9
1,791,013 - Psyr_1592 0.14 -0.2
1,791,013 - Psyr_1592 0.14 +1.1
1,791,013 - Psyr_1592 0.14 +0.2
1,791,013 - Psyr_1592 0.14 -0.1
1,791,013 - Psyr_1592 0.14 +0.1
1,791,013 - Psyr_1592 0.14 -2.6
1,791,013 - Psyr_1592 0.14 -0.2
1,791,013 - Psyr_1592 0.14 -0.4
1,791,013 - Psyr_1592 0.14 -0.2
1,791,013 - Psyr_1592 0.14 +0.1
1,791,013 - Psyr_1592 0.14 +1.3
1,791,013 - Psyr_1592 0.14 -0.7
1,791,013 - Psyr_1592 0.14 -0.6
1,791,013 - Psyr_1592 0.14 +0.3
1,791,013 - Psyr_1592 0.14 +0.3
1,791,013 - Psyr_1592 0.14 -0.9
1,791,086 + Psyr_1592 0.28 +0.0
1,791,086 + Psyr_1592 0.28 +1.3
1,791,086 + Psyr_1592 0.28 +1.4
1,791,086 + Psyr_1592 0.28 +1.7
1,791,087 - Psyr_1592 0.28 -0.3
1,791,087 - Psyr_1592 0.28 -0.2
1,791,087 - Psyr_1592 0.28 -0.2
1,791,087 - Psyr_1592 0.28 -0.5
1,791,087 - Psyr_1592 0.28 -0.2
1,791,087 - Psyr_1592 0.28 -1.3
1,791,162 + Psyr_1592 0.42 +0.0
1,791,162 + Psyr_1592 0.42 -1.3
1,791,162 + Psyr_1592 0.42 -2.4
1,791,163 - Psyr_1592 0.43 +0.2
1,791,163 - Psyr_1592 0.43 +1.8
1,791,357 + Psyr_1592 0.80 -1.2
1,791,358 - Psyr_1592 0.80 -1.1
1,791,461 - +0.3

Or see this region's nucleotide sequence