Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0998

Experiment: KB with 4-hydroxychalcone 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0996 and Psyr_0997 are separated by 41 nucleotidesPsyr_0997 and Psyr_0998 are separated by 10 nucleotidesPsyr_0998 and Psyr_0999 overlap by 1 nucleotides Psyr_0996: Psyr_0996 - Alpha/beta hydrolase fold protein, at 1,130,436 to 1,131,215 _0996 Psyr_0997: Psyr_0997 - Endoribonuclease L-PSP, at 1,131,257 to 1,131,640 _0997 Psyr_0998: Psyr_0998 - Isochorismatase hydrolase, at 1,131,651 to 1,132,388 _0998 Psyr_0999: Psyr_0999 - luciferase, at 1,132,388 to 1,133,470 _0999 Position (kb) 1131 1132 1133Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1130.793 kb on + strand, within Psyr_0996at 1130.793 kb on + strand, within Psyr_0996at 1130.793 kb on + strand, within Psyr_0996at 1130.794 kb on - strand, within Psyr_0996at 1130.794 kb on - strand, within Psyr_0996at 1130.794 kb on - strand, within Psyr_0996at 1130.794 kb on - strand, within Psyr_0996at 1130.794 kb on - strand, within Psyr_0996at 1130.797 kb on + strand, within Psyr_0996at 1130.798 kb on - strand, within Psyr_0996at 1130.798 kb on - strand, within Psyr_0996at 1130.798 kb on - strand, within Psyr_0996at 1130.798 kb on - strand, within Psyr_0996at 1130.798 kb on - strand, within Psyr_0996at 1130.798 kb on - strand, within Psyr_0996at 1130.798 kb on - strand, within Psyr_0996at 1130.890 kb on - strand, within Psyr_0996at 1131.082 kb on + strand, within Psyr_0996at 1131.082 kb on + strand, within Psyr_0996at 1131.082 kb on + strand, within Psyr_0996at 1131.083 kb on - strand, within Psyr_0996at 1131.083 kb on - strand, within Psyr_0996at 1131.083 kb on - strand, within Psyr_0996at 1131.355 kb on - strand, within Psyr_0997at 1131.363 kb on + strand, within Psyr_0997at 1131.363 kb on + strand, within Psyr_0997at 1131.363 kb on + strand, within Psyr_0997at 1131.363 kb on + strand, within Psyr_0997at 1131.363 kb on + strand, within Psyr_0997at 1131.363 kb on + strand, within Psyr_0997at 1131.363 kb on + strand, within Psyr_0997at 1131.363 kb on + strand, within Psyr_0997at 1131.363 kb on + strand, within Psyr_0997at 1131.364 kb on - strand, within Psyr_0997at 1131.364 kb on - strand, within Psyr_0997at 1131.364 kb on - strand, within Psyr_0997at 1131.364 kb on - strand, within Psyr_0997at 1131.364 kb on - strand, within Psyr_0997at 1131.364 kb on - strand, within Psyr_0997at 1131.384 kb on + strand, within Psyr_0997at 1131.512 kb on + strand, within Psyr_0997at 1131.513 kb on - strand, within Psyr_0997at 1131.555 kb on + strand, within Psyr_0997at 1131.555 kb on + strand, within Psyr_0997at 1131.555 kb on + strand, within Psyr_0997at 1131.555 kb on + strand, within Psyr_0997at 1131.555 kb on + strand, within Psyr_0997at 1131.555 kb on + strand, within Psyr_0997at 1131.555 kb on + strand, within Psyr_0997at 1131.555 kb on + strand, within Psyr_0997at 1131.555 kb on + strand, within Psyr_0997at 1131.555 kb on + strand, within Psyr_0997at 1131.555 kb on + strand, within Psyr_0997at 1131.555 kb on + strand, within Psyr_0997at 1131.556 kb on - strand, within Psyr_0997at 1131.556 kb on - strand, within Psyr_0997at 1131.556 kb on - strand, within Psyr_0997at 1131.556 kb on - strand, within Psyr_0997at 1131.556 kb on - strand, within Psyr_0997at 1131.556 kb on - strand, within Psyr_0997at 1131.556 kb on - strand, within Psyr_0997at 1131.556 kb on - strand, within Psyr_0997at 1131.556 kb on - strand, within Psyr_0997at 1131.991 kb on + strand, within Psyr_0998at 1132.105 kb on + strand, within Psyr_0998at 1132.105 kb on + strand, within Psyr_0998at 1132.105 kb on + strand, within Psyr_0998at 1132.105 kb on + strand, within Psyr_0998at 1132.106 kb on - strand, within Psyr_0998at 1132.106 kb on - strand, within Psyr_0998at 1132.181 kb on + strand, within Psyr_0998at 1132.863 kb on + strand, within Psyr_0999at 1132.864 kb on - strand, within Psyr_0999at 1132.864 kb on - strand, within Psyr_0999at 1132.864 kb on - strand, within Psyr_0999at 1133.032 kb on - strand, within Psyr_0999at 1133.043 kb on + strand, within Psyr_0999at 1133.044 kb on - strand, within Psyr_0999at 1133.097 kb on + strand, within Psyr_0999at 1133.098 kb on - strand, within Psyr_0999

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with 4-hydroxychalcone 10 mM
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1,130,793 + Psyr_0996 0.46 +0.8
1,130,793 + Psyr_0996 0.46 +0.2
1,130,793 + Psyr_0996 0.46 -0.3
1,130,794 - Psyr_0996 0.46 -0.6
1,130,794 - Psyr_0996 0.46 -1.5
1,130,794 - Psyr_0996 0.46 -0.5
1,130,794 - Psyr_0996 0.46 +0.4
1,130,794 - Psyr_0996 0.46 -0.6
1,130,797 + Psyr_0996 0.46 +0.8
1,130,798 - Psyr_0996 0.46 -1.0
1,130,798 - Psyr_0996 0.46 -0.2
1,130,798 - Psyr_0996 0.46 -0.5
1,130,798 - Psyr_0996 0.46 -0.5
1,130,798 - Psyr_0996 0.46 +1.9
1,130,798 - Psyr_0996 0.46 +1.1
1,130,798 - Psyr_0996 0.46 -0.5
1,130,890 - Psyr_0996 0.58 -1.1
1,131,082 + Psyr_0996 0.83 +1.0
1,131,082 + Psyr_0996 0.83 -2.1
1,131,082 + Psyr_0996 0.83 -0.5
1,131,083 - Psyr_0996 0.83 -0.5
1,131,083 - Psyr_0996 0.83 -0.3
1,131,083 - Psyr_0996 0.83 -2.9
1,131,355 - Psyr_0997 0.26 +1.3
1,131,363 + Psyr_0997 0.28 -0.3
1,131,363 + Psyr_0997 0.28 +0.0
1,131,363 + Psyr_0997 0.28 +0.3
1,131,363 + Psyr_0997 0.28 -0.8
1,131,363 + Psyr_0997 0.28 -0.5
1,131,363 + Psyr_0997 0.28 +0.2
1,131,363 + Psyr_0997 0.28 +1.1
1,131,363 + Psyr_0997 0.28 +1.1
1,131,363 + Psyr_0997 0.28 -0.1
1,131,364 - Psyr_0997 0.28 -0.9
1,131,364 - Psyr_0997 0.28 -1.1
1,131,364 - Psyr_0997 0.28 +0.1
1,131,364 - Psyr_0997 0.28 +0.8
1,131,364 - Psyr_0997 0.28 +0.2
1,131,364 - Psyr_0997 0.28 -1.1
1,131,384 + Psyr_0997 0.33 -1.7
1,131,512 + Psyr_0997 0.66 -0.2
1,131,513 - Psyr_0997 0.67 -1.8
1,131,555 + Psyr_0997 0.78 -1.9
1,131,555 + Psyr_0997 0.78 +1.1
1,131,555 + Psyr_0997 0.78 -0.2
1,131,555 + Psyr_0997 0.78 +0.3
1,131,555 + Psyr_0997 0.78 -1.4
1,131,555 + Psyr_0997 0.78 -1.3
1,131,555 + Psyr_0997 0.78 +1.2
1,131,555 + Psyr_0997 0.78 +1.1
1,131,555 + Psyr_0997 0.78 +0.3
1,131,555 + Psyr_0997 0.78 +0.3
1,131,555 + Psyr_0997 0.78 -0.1
1,131,555 + Psyr_0997 0.78 -0.5
1,131,556 - Psyr_0997 0.78 -0.4
1,131,556 - Psyr_0997 0.78 +0.1
1,131,556 - Psyr_0997 0.78 -0.9
1,131,556 - Psyr_0997 0.78 +0.8
1,131,556 - Psyr_0997 0.78 -0.3
1,131,556 - Psyr_0997 0.78 -1.0
1,131,556 - Psyr_0997 0.78 -0.5
1,131,556 - Psyr_0997 0.78 -0.8
1,131,556 - Psyr_0997 0.78 -0.2
1,131,991 + Psyr_0998 0.46 -0.4
1,132,105 + Psyr_0998 0.62 -0.5
1,132,105 + Psyr_0998 0.62 +0.1
1,132,105 + Psyr_0998 0.62 -0.3
1,132,105 + Psyr_0998 0.62 -0.9
1,132,106 - Psyr_0998 0.62 -0.3
1,132,106 - Psyr_0998 0.62 +0.8
1,132,181 + Psyr_0998 0.72 -1.3
1,132,863 + Psyr_0999 0.44 +0.1
1,132,864 - Psyr_0999 0.44 +0.1
1,132,864 - Psyr_0999 0.44 -0.0
1,132,864 - Psyr_0999 0.44 +0.1
1,133,032 - Psyr_0999 0.59 -0.6
1,133,043 + Psyr_0999 0.60 +0.1
1,133,044 - Psyr_0999 0.61 +0.5
1,133,097 + Psyr_0999 0.65 -0.4
1,133,098 - Psyr_0999 0.66 +2.1

Or see this region's nucleotide sequence