Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2660

Experiment: MoYLS4 media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2659 and DvMF_2660 overlap by 4 nucleotidesDvMF_2660 and DvMF_2661 are separated by 207 nucleotides DvMF_2659: DvMF_2659 - cysteine desulfurase NifS (RefSeq), at 3,358,663 to 3,359,877 _2659 DvMF_2660: DvMF_2660 - Fe-S cluster assembly protein NifU (RefSeq), at 3,359,874 to 3,360,719 _2660 DvMF_2661: DvMF_2661 - metal dependent phosphohydrolase (RefSeq), at 3,360,927 to 3,361,910 _2661 Position (kb) 3359 3360 3361Strain fitness (log2 ratio) -1 0 1at 3358.895 kb on - strand, within DvMF_2659at 3358.895 kb on - strand, within DvMF_2659at 3359.095 kb on + strand, within DvMF_2659at 3359.219 kb on - strand, within DvMF_2659at 3359.252 kb on + strand, within DvMF_2659at 3359.327 kb on - strand, within DvMF_2659at 3359.516 kb on + strand, within DvMF_2659at 3359.663 kb on + strand, within DvMF_2659at 3359.687 kb on - strand, within DvMF_2659at 3359.872 kb on + strandat 3359.941 kb on - strandat 3359.948 kb on - strandat 3360.162 kb on + strand, within DvMF_2660at 3360.165 kb on - strand, within DvMF_2660at 3360.475 kb on - strand, within DvMF_2660at 3360.493 kb on + strand, within DvMF_2660at 3360.515 kb on - strand, within DvMF_2660at 3360.651 kb on - strandat 3360.919 kb on + strandat 3360.924 kb on + strandat 3360.927 kb on - strandat 3361.137 kb on + strand, within DvMF_2661at 3361.225 kb on + strand, within DvMF_2661at 3361.360 kb on - strand, within DvMF_2661at 3361.360 kb on - strand, within DvMF_2661at 3361.600 kb on + strand, within DvMF_2661at 3361.637 kb on - strand, within DvMF_2661

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 media
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3,358,895 - DvMF_2659 0.19 -0.2
3,358,895 - DvMF_2659 0.19 -0.8
3,359,095 + DvMF_2659 0.36 -0.3
3,359,219 - DvMF_2659 0.46 -1.2
3,359,252 + DvMF_2659 0.48 -1.0
3,359,327 - DvMF_2659 0.55 -1.3
3,359,516 + DvMF_2659 0.70 -0.9
3,359,663 + DvMF_2659 0.82 -0.7
3,359,687 - DvMF_2659 0.84 -1.5
3,359,872 + +0.3
3,359,941 - -0.9
3,359,948 - +0.7
3,360,162 + DvMF_2660 0.34 -1.3
3,360,165 - DvMF_2660 0.34 -0.4
3,360,475 - DvMF_2660 0.71 -0.1
3,360,493 + DvMF_2660 0.73 +1.3
3,360,515 - DvMF_2660 0.76 -1.1
3,360,651 - -1.1
3,360,919 + -0.8
3,360,924 + +0.3
3,360,927 - -0.3
3,361,137 + DvMF_2661 0.21 +0.9
3,361,225 + DvMF_2661 0.30 +0.9
3,361,360 - DvMF_2661 0.44 -0.0
3,361,360 - DvMF_2661 0.44 +1.2
3,361,600 + DvMF_2661 0.68 +1.7
3,361,637 - DvMF_2661 0.72 +0.5

Or see this region's nucleotide sequence