Experiment: MoYLS4 media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2561 and DvMF_2562 overlap by 4 nucleotides DvMF_2562 and DvMF_R0070 are separated by 123 nucleotides DvMF_R0070 and DvMF_2563 are separated by 203 nucleotides DvMF_2563 and DvMF_2564 are separated by 600 nucleotides
DvMF_2561: DvMF_2561 - hypothetical protein (RefSeq), at 3,237,191 to 3,237,337
_2561
DvMF_2562: DvMF_2562 - ThiJ/PfpI domain protein (RefSeq), at 3,237,334 to 3,237,930
_2562
DvMF_R0070: DvMF_R0070 - tRNA-Glu (RefSeq), at 3,238,054 to 3,238,130
_R0070
DvMF_2563: DvMF_2563 - protein of unknown function DUF721 (RefSeq), at 3,238,334 to 3,238,870
_2563
DvMF_2564: DvMF_2564 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq), at 3,239,471 to 3,241,990
_2564
Position (kb)
3238
3239 Strain fitness (log2 ratio)
-1
0
1 at 3237.590 kb on - strand, within DvMF_2562 at 3237.826 kb on - strand, within DvMF_2562 at 3238.020 kb on - strand at 3238.104 kb on + strand, within DvMF_R0070 at 3238.353 kb on + strand at 3238.392 kb on + strand, within DvMF_2563 at 3238.876 kb on + strand at 3239.023 kb on - strand at 3239.174 kb on - strand at 3239.236 kb on + strand at 3239.319 kb on - strand at 3239.392 kb on + strand at 3239.400 kb on - strand at 3239.407 kb on + strand at 3239.455 kb on + strand at 3239.457 kb on - strand at 3239.595 kb on + strand at 3239.662 kb on - strand at 3239.683 kb on + strand at 3239.813 kb on - strand, within DvMF_2564 at 3239.820 kb on - strand, within DvMF_2564 at 3239.852 kb on - strand, within DvMF_2564
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 media remove 3,237,590 - DvMF_2562 0.43 -0.9 3,237,826 - DvMF_2562 0.82 -0.4 3,238,020 - -0.9 3,238,104 + DvMF_R0070 0.65 -1.3 3,238,353 + -0.4 3,238,392 + DvMF_2563 0.11 -0.9 3,238,876 + -0.1 3,239,023 - -0.5 3,239,174 - -0.9 3,239,236 + -0.0 3,239,319 - -0.4 3,239,392 + +0.1 3,239,400 - -1.2 3,239,407 + -0.1 3,239,455 + -0.3 3,239,457 - -0.8 3,239,595 + +0.2 3,239,662 - +0.4 3,239,683 + -0.9 3,239,813 - DvMF_2564 0.14 -1.1 3,239,820 - DvMF_2564 0.14 -1.1 3,239,852 - DvMF_2564 0.15 -0.5
Or see this region's nucleotide sequence