Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2563

Experiment: MoYLS4 media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2561 and DvMF_2562 overlap by 4 nucleotidesDvMF_2562 and DvMF_R0070 are separated by 123 nucleotidesDvMF_R0070 and DvMF_2563 are separated by 203 nucleotidesDvMF_2563 and DvMF_2564 are separated by 600 nucleotides DvMF_2561: DvMF_2561 - hypothetical protein (RefSeq), at 3,237,191 to 3,237,337 _2561 DvMF_2562: DvMF_2562 - ThiJ/PfpI domain protein (RefSeq), at 3,237,334 to 3,237,930 _2562 DvMF_R0070: DvMF_R0070 - tRNA-Glu (RefSeq), at 3,238,054 to 3,238,130 _R0070 DvMF_2563: DvMF_2563 - protein of unknown function DUF721 (RefSeq), at 3,238,334 to 3,238,870 _2563 DvMF_2564: DvMF_2564 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq), at 3,239,471 to 3,241,990 _2564 Position (kb) 3238 3239Strain fitness (log2 ratio) -1 0 1at 3237.590 kb on - strand, within DvMF_2562at 3237.826 kb on - strand, within DvMF_2562at 3238.020 kb on - strandat 3238.104 kb on + strand, within DvMF_R0070at 3238.353 kb on + strandat 3238.392 kb on + strand, within DvMF_2563at 3238.876 kb on + strandat 3239.023 kb on - strandat 3239.174 kb on - strandat 3239.236 kb on + strandat 3239.319 kb on - strandat 3239.392 kb on + strandat 3239.400 kb on - strandat 3239.407 kb on + strandat 3239.455 kb on + strandat 3239.457 kb on - strandat 3239.595 kb on + strandat 3239.662 kb on - strandat 3239.683 kb on + strandat 3239.813 kb on - strand, within DvMF_2564at 3239.820 kb on - strand, within DvMF_2564at 3239.852 kb on - strand, within DvMF_2564

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 media
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3,237,590 - DvMF_2562 0.43 -0.9
3,237,826 - DvMF_2562 0.82 -0.4
3,238,020 - -0.9
3,238,104 + DvMF_R0070 0.65 -1.3
3,238,353 + -0.4
3,238,392 + DvMF_2563 0.11 -0.9
3,238,876 + -0.1
3,239,023 - -0.5
3,239,174 - -0.9
3,239,236 + -0.0
3,239,319 - -0.4
3,239,392 + +0.1
3,239,400 - -1.2
3,239,407 + -0.1
3,239,455 + -0.3
3,239,457 - -0.8
3,239,595 + +0.2
3,239,662 - +0.4
3,239,683 + -0.9
3,239,813 - DvMF_2564 0.14 -1.1
3,239,820 - DvMF_2564 0.14 -1.1
3,239,852 - DvMF_2564 0.15 -0.5

Or see this region's nucleotide sequence