Experiment: MoYLS4 media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2301 and DvMF_2302 are separated by 98 nucleotides DvMF_2302 and DvMF_2303 are separated by 136 nucleotides DvMF_2303 and DvMF_2304 are separated by 161 nucleotides DvMF_2304 and hisH overlap by 8 nucleotides
DvMF_2301: DvMF_2301 - molybdenum cofactor biosynthesis protein C (RefSeq), at 2,891,919 to 2,892,410
_2301
DvMF_2302: DvMF_2302 - Dimethylmenaquinone methyltransferase (RefSeq), at 2,892,509 to 2,893,186
_2302
DvMF_2303: DvMF_2303 - esterase/lipase-like protein (RefSeq), at 2,893,323 to 2,894,333
_2303
DvMF_2304: DvMF_2304 - imidazole glycerol phosphate synthase subunit HisF (RefSeq), at 2,894,495 to 2,895,274
_2304
DvMF_2305: hisH - IGP synthase, amidotransferase subunit (EC 4.3.2.10) (from data) , at 2,895,267 to 2,895,905
hisH
Position (kb)
2893
2894
2895 Strain fitness (log2 ratio)
-1
0
1 at 2892.328 kb on - strand, within DvMF_2301 at 2892.328 kb on - strand, within DvMF_2301 at 2892.565 kb on + strand at 2892.906 kb on + strand, within DvMF_2302 at 2893.020 kb on + strand, within DvMF_2302 at 2893.030 kb on - strand, within DvMF_2302 at 2893.175 kb on - strand at 2893.257 kb on + strand at 2893.668 kb on + strand, within DvMF_2303 at 2893.942 kb on + strand, within DvMF_2303 at 2894.119 kb on + strand, within DvMF_2303 at 2894.512 kb on + strand at 2894.553 kb on + strand at 2894.615 kb on - strand, within DvMF_2304 at 2894.896 kb on + strand, within DvMF_2304 at 2895.003 kb on + strand, within DvMF_2304 at 2895.005 kb on - strand, within DvMF_2304 at 2895.216 kb on + strand at 2895.282 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 media remove 2,892,328 - DvMF_2301 0.83 -0.4 2,892,328 - DvMF_2301 0.83 -0.6 2,892,565 + -1.0 2,892,906 + DvMF_2302 0.59 -0.9 2,893,020 + DvMF_2302 0.75 -0.8 2,893,030 - DvMF_2302 0.77 -0.4 2,893,175 - -0.3 2,893,257 + -1.0 2,893,668 + DvMF_2303 0.34 -1.7 2,893,942 + DvMF_2303 0.61 -0.5 2,894,119 + DvMF_2303 0.79 -0.3 2,894,512 + +1.0 2,894,553 + -0.5 2,894,615 - DvMF_2304 0.15 -0.5 2,894,896 + DvMF_2304 0.51 -0.5 2,895,003 + DvMF_2304 0.65 -0.7 2,895,005 - DvMF_2304 0.65 -0.5 2,895,216 + -0.5 2,895,282 - -0.0
Or see this region's nucleotide sequence