Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2108

Experiment: MoYLS4 media

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_2107 and DvMF_2108 overlap by 13 nucleotidesDvMF_2108 and DvMF_2109 overlap by 4 nucleotides DvMF_2107: DvMF_2107 - response regulator receiver protein (RefSeq), at 2,624,260 to 2,626,566 _2107 DvMF_2108: DvMF_2108 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 2,626,554 to 2,628,242 _2108 DvMF_2109: DvMF_2109 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 2,628,239 to 2,629,786 _2109 Position (kb) 2626 2627 2628 2629Strain fitness (log2 ratio) -1 0 1at 2625.907 kb on + strand, within DvMF_2107at 2625.950 kb on + strand, within DvMF_2107at 2626.096 kb on - strand, within DvMF_2107at 2626.249 kb on - strand, within DvMF_2107at 2626.669 kb on - strandat 2626.685 kb on + strandat 2626.763 kb on + strand, within DvMF_2108at 2626.862 kb on + strand, within DvMF_2108at 2626.864 kb on + strand, within DvMF_2108at 2627.065 kb on + strand, within DvMF_2108at 2627.214 kb on + strand, within DvMF_2108at 2627.214 kb on + strand, within DvMF_2108at 2627.224 kb on + strand, within DvMF_2108at 2627.444 kb on - strand, within DvMF_2108at 2627.503 kb on + strand, within DvMF_2108at 2627.597 kb on - strand, within DvMF_2108at 2627.654 kb on - strand, within DvMF_2108at 2627.762 kb on + strand, within DvMF_2108at 2627.966 kb on + strand, within DvMF_2108at 2628.037 kb on + strand, within DvMF_2108at 2628.316 kb on - strandat 2628.511 kb on + strand, within DvMF_2109at 2629.104 kb on - strand, within DvMF_2109at 2629.174 kb on - strand, within DvMF_2109at 2629.240 kb on + strand, within DvMF_2109

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 media
remove
2,625,907 + DvMF_2107 0.71 -0.2
2,625,950 + DvMF_2107 0.73 +0.2
2,626,096 - DvMF_2107 0.80 +0.4
2,626,249 - DvMF_2107 0.86 +0.0
2,626,669 - -0.5
2,626,685 + -0.9
2,626,763 + DvMF_2108 0.12 -0.1
2,626,862 + DvMF_2108 0.18 +0.4
2,626,864 + DvMF_2108 0.18 +0.3
2,627,065 + DvMF_2108 0.30 -0.1
2,627,214 + DvMF_2108 0.39 -0.0
2,627,214 + DvMF_2108 0.39 -0.2
2,627,224 + DvMF_2108 0.40 -0.1
2,627,444 - DvMF_2108 0.53 -0.1
2,627,503 + DvMF_2108 0.56 +0.0
2,627,597 - DvMF_2108 0.62 -0.1
2,627,654 - DvMF_2108 0.65 +0.4
2,627,762 + DvMF_2108 0.72 +0.6
2,627,966 + DvMF_2108 0.84 -0.1
2,628,037 + DvMF_2108 0.88 +0.1
2,628,316 - -0.6
2,628,511 + DvMF_2109 0.18 -0.4
2,629,104 - DvMF_2109 0.56 -0.1
2,629,174 - DvMF_2109 0.60 +0.2
2,629,240 + DvMF_2109 0.65 +0.1

Or see this region's nucleotide sequence