Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1831

Experiment: MoYLS4 media

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_1830 and DvMF_1831 are separated by 484 nucleotidesDvMF_1831 and DvMF_1832 overlap by 4 nucleotides DvMF_1830: DvMF_1830 - hypothetical protein (RefSeq), at 2,233,878 to 2,234,846 _1830 DvMF_1831: DvMF_1831 - transcriptional regulator, MarR family (RefSeq), at 2,235,331 to 2,235,993 _1831 DvMF_1832: DvMF_1832 - N-acylneuraminate-9-phosphate synthase (RefSeq), at 2,235,990 to 2,237,174 _1832 Position (kb) 2235 2236Strain fitness (log2 ratio) -1 0 1at 2234.667 kb on - strand, within DvMF_1830at 2234.670 kb on + strand, within DvMF_1830at 2234.681 kb on + strand, within DvMF_1830at 2234.706 kb on - strand, within DvMF_1830at 2234.760 kb on - strandat 2234.882 kb on + strandat 2234.926 kb on + strandat 2234.974 kb on - strandat 2234.979 kb on - strandat 2235.165 kb on - strandat 2235.172 kb on + strandat 2235.349 kb on + strandat 2235.357 kb on - strandat 2235.357 kb on - strandat 2235.599 kb on - strand, within DvMF_1831at 2235.687 kb on + strand, within DvMF_1831at 2235.725 kb on - strand, within DvMF_1831at 2235.843 kb on + strand, within DvMF_1831at 2235.846 kb on - strand, within DvMF_1831at 2235.995 kb on - strandat 2236.205 kb on + strand, within DvMF_1832at 2236.255 kb on + strand, within DvMF_1832at 2236.359 kb on + strand, within DvMF_1832at 2236.402 kb on - strand, within DvMF_1832at 2236.423 kb on - strand, within DvMF_1832at 2236.625 kb on - strand, within DvMF_1832at 2236.668 kb on - strand, within DvMF_1832at 2236.725 kb on - strand, within DvMF_1832at 2236.786 kb on - strand, within DvMF_1832at 2236.800 kb on - strand, within DvMF_1832at 2236.840 kb on - strand, within DvMF_1832at 2236.853 kb on - strand, within DvMF_1832

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 media
remove
2,234,667 - DvMF_1830 0.81 -0.8
2,234,670 + DvMF_1830 0.82 -0.5
2,234,681 + DvMF_1830 0.83 -0.7
2,234,706 - DvMF_1830 0.85 -1.4
2,234,760 - -0.5
2,234,882 + -0.7
2,234,926 + -0.3
2,234,974 - -0.2
2,234,979 - -0.2
2,235,165 - +1.0
2,235,172 + -0.4
2,235,349 + -0.6
2,235,357 - +1.5
2,235,357 - -0.0
2,235,599 - DvMF_1831 0.40 -0.7
2,235,687 + DvMF_1831 0.54 -0.6
2,235,725 - DvMF_1831 0.59 -0.1
2,235,843 + DvMF_1831 0.77 -0.3
2,235,846 - DvMF_1831 0.78 -0.4
2,235,995 - -0.4
2,236,205 + DvMF_1832 0.18 -0.3
2,236,255 + DvMF_1832 0.22 -0.8
2,236,359 + DvMF_1832 0.31 -0.6
2,236,402 - DvMF_1832 0.35 +0.1
2,236,423 - DvMF_1832 0.37 -1.0
2,236,625 - DvMF_1832 0.54 -0.0
2,236,668 - DvMF_1832 0.57 -0.0
2,236,725 - DvMF_1832 0.62 -0.6
2,236,786 - DvMF_1832 0.67 -0.9
2,236,800 - DvMF_1832 0.68 -0.7
2,236,840 - DvMF_1832 0.72 -0.2
2,236,853 - DvMF_1832 0.73 -0.2

Or see this region's nucleotide sequence