Experiment: KB with Curcumin 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4848 and Psyr_4849 are separated by 78 nucleotides Psyr_4849 and Psyr_4850 are separated by 182 nucleotides Psyr_4850 and Psyr_4851 are separated by 80 nucleotides
Psyr_4848: Psyr_4848 - SdiA-regulated, at 5,754,667 to 5,755,620
_4848
Psyr_4849: Psyr_4849 - SdiA-regulated, at 5,755,699 to 5,756,643
_4849
Psyr_4850: Psyr_4850 - Fumarylacetoacetate (FAA) hydrolase, at 5,756,826 to 5,757,491
_4850
Psyr_4851: Psyr_4851 - FAD linked oxidase, C-terminal:FAD linked oxidase, N-terminal, at 5,757,572 to 5,758,990
_4851
Position (kb) 5755
5756
5757 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5754.713 kb on + strand at 5754.713 kb on + strand at 5754.713 kb on + strand at 5754.713 kb on + strand at 5754.713 kb on + strand at 5754.714 kb on - strand at 5754.714 kb on - strand at 5754.714 kb on - strand at 5754.714 kb on - strand at 5754.714 kb on - strand at 5755.058 kb on + strand, within Psyr_4848 at 5755.058 kb on + strand, within Psyr_4848 at 5755.059 kb on - strand, within Psyr_4848 at 5755.059 kb on - strand, within Psyr_4848 at 5755.199 kb on + strand, within Psyr_4848 at 5755.199 kb on + strand, within Psyr_4848 at 5755.199 kb on + strand, within Psyr_4848 at 5755.199 kb on + strand, within Psyr_4848 at 5755.199 kb on + strand, within Psyr_4848 at 5755.199 kb on + strand, within Psyr_4848 at 5755.199 kb on + strand, within Psyr_4848 at 5755.199 kb on + strand, within Psyr_4848 at 5755.199 kb on + strand, within Psyr_4848 at 5755.199 kb on + strand, within Psyr_4848 at 5755.199 kb on + strand, within Psyr_4848 at 5755.199 kb on + strand, within Psyr_4848 at 5755.199 kb on + strand, within Psyr_4848 at 5755.199 kb on + strand, within Psyr_4848 at 5755.199 kb on + strand, within Psyr_4848 at 5755.199 kb on + strand, within Psyr_4848 at 5755.199 kb on + strand, within Psyr_4848 at 5755.199 kb on + strand, within Psyr_4848 at 5755.199 kb on + strand, within Psyr_4848 at 5755.200 kb on - strand, within Psyr_4848 at 5755.200 kb on - strand, within Psyr_4848 at 5755.200 kb on - strand, within Psyr_4848 at 5755.200 kb on - strand, within Psyr_4848 at 5755.200 kb on - strand, within Psyr_4848 at 5755.200 kb on - strand, within Psyr_4848 at 5755.200 kb on - strand, within Psyr_4848 at 5755.200 kb on - strand, within Psyr_4848 at 5755.200 kb on - strand, within Psyr_4848 at 5755.200 kb on - strand, within Psyr_4848 at 5755.200 kb on - strand, within Psyr_4848 at 5755.200 kb on - strand, within Psyr_4848 at 5755.200 kb on - strand, within Psyr_4848 at 5755.217 kb on + strand, within Psyr_4848 at 5755.217 kb on + strand, within Psyr_4848 at 5755.218 kb on - strand, within Psyr_4848 at 5755.218 kb on - strand, within Psyr_4848 at 5755.218 kb on - strand, within Psyr_4848 at 5755.218 kb on - strand, within Psyr_4848 at 5755.218 kb on - strand, within Psyr_4848 at 5755.321 kb on - strand, within Psyr_4848 at 5755.484 kb on + strand, within Psyr_4848 at 5755.513 kb on + strand, within Psyr_4848 at 5755.513 kb on + strand, within Psyr_4848 at 5755.513 kb on + strand, within Psyr_4848 at 5755.514 kb on - strand, within Psyr_4848 at 5755.515 kb on + strand, within Psyr_4848 at 5755.516 kb on - strand, within Psyr_4848 at 5755.516 kb on - strand, within Psyr_4848 at 5755.516 kb on - strand, within Psyr_4848 at 5755.516 kb on - strand, within Psyr_4848 at 5755.528 kb on + strand at 5755.528 kb on + strand at 5755.528 kb on + strand at 5755.528 kb on + strand at 5755.529 kb on - strand at 5755.529 kb on - strand at 5755.529 kb on - strand at 5755.549 kb on + strand at 5755.550 kb on - strand at 5755.560 kb on + strand at 5755.560 kb on + strand at 5755.560 kb on + strand at 5755.573 kb on + strand at 5755.574 kb on - strand at 5755.574 kb on - strand at 5755.636 kb on - strand at 5755.649 kb on + strand at 5755.649 kb on + strand at 5755.649 kb on + strand at 5755.649 kb on + strand at 5755.649 kb on + strand at 5755.649 kb on + strand at 5755.650 kb on - strand at 5755.650 kb on - strand at 5755.650 kb on - strand at 5755.650 kb on - strand at 5755.650 kb on - strand at 5755.651 kb on + strand at 5755.651 kb on + strand at 5755.651 kb on + strand at 5755.651 kb on + strand at 5755.651 kb on + strand at 5755.651 kb on + strand at 5755.652 kb on - strand at 5755.652 kb on - strand at 5755.652 kb on - strand at 5755.652 kb on - strand at 5755.668 kb on + strand at 5755.669 kb on - strand at 5755.683 kb on + strand at 5755.683 kb on + strand at 5755.684 kb on - strand at 5755.684 kb on - strand at 5755.730 kb on + strand at 5755.730 kb on + strand at 5755.731 kb on - strand at 5755.731 kb on - strand at 5755.731 kb on - strand at 5755.731 kb on - strand at 5755.731 kb on - strand at 5755.757 kb on + strand at 5755.757 kb on + strand at 5755.757 kb on + strand at 5755.757 kb on + strand at 5755.757 kb on + strand at 5755.757 kb on + strand at 5755.757 kb on + strand at 5755.757 kb on + strand at 5755.757 kb on + strand at 5755.758 kb on - strand at 5755.758 kb on - strand at 5755.758 kb on - strand at 5755.758 kb on - strand at 5755.758 kb on - strand at 5755.758 kb on - strand at 5755.758 kb on - strand at 5755.758 kb on - strand at 5755.758 kb on - strand at 5755.806 kb on + strand, within Psyr_4849 at 5755.807 kb on - strand, within Psyr_4849 at 5756.027 kb on + strand, within Psyr_4849 at 5756.027 kb on + strand, within Psyr_4849 at 5756.027 kb on + strand, within Psyr_4849 at 5756.028 kb on - strand, within Psyr_4849 at 5756.028 kb on - strand, within Psyr_4849 at 5756.028 kb on - strand, within Psyr_4849 at 5756.056 kb on + strand, within Psyr_4849 at 5756.132 kb on + strand, within Psyr_4849 at 5756.133 kb on - strand, within Psyr_4849 at 5756.182 kb on - strand, within Psyr_4849 at 5756.290 kb on + strand, within Psyr_4849 at 5756.290 kb on + strand, within Psyr_4849 at 5756.290 kb on + strand, within Psyr_4849 at 5756.290 kb on + strand, within Psyr_4849 at 5756.290 kb on + strand, within Psyr_4849 at 5756.290 kb on + strand, within Psyr_4849 at 5756.291 kb on - strand, within Psyr_4849 at 5756.291 kb on - strand, within Psyr_4849 at 5756.291 kb on - strand, within Psyr_4849 at 5756.291 kb on - strand, within Psyr_4849 at 5756.291 kb on - strand, within Psyr_4849 at 5756.291 kb on - strand, within Psyr_4849 at 5756.291 kb on - strand, within Psyr_4849 at 5756.368 kb on - strand, within Psyr_4849 at 5756.369 kb on + strand, within Psyr_4849 at 5756.369 kb on + strand, within Psyr_4849 at 5756.369 kb on + strand, within Psyr_4849 at 5756.369 kb on + strand, within Psyr_4849 at 5756.370 kb on - strand, within Psyr_4849 at 5756.370 kb on - strand, within Psyr_4849 at 5756.370 kb on - strand, within Psyr_4849 at 5756.370 kb on - strand, within Psyr_4849 at 5756.561 kb on - strand at 5756.574 kb on - strand at 5756.595 kb on - strand at 5756.634 kb on + strand at 5756.748 kb on + strand at 5756.748 kb on + strand at 5756.748 kb on + strand at 5756.749 kb on - strand at 5757.219 kb on + strand, within Psyr_4850 at 5757.219 kb on + strand, within Psyr_4850 at 5757.219 kb on + strand, within Psyr_4850 at 5757.219 kb on + strand, within Psyr_4850 at 5757.283 kb on + strand, within Psyr_4850 at 5757.283 kb on + strand, within Psyr_4850 at 5757.284 kb on - strand, within Psyr_4850 at 5757.412 kb on + strand, within Psyr_4850 at 5757.413 kb on - strand, within Psyr_4850 at 5757.413 kb on - strand, within Psyr_4850 at 5757.413 kb on - strand, within Psyr_4850 at 5757.417 kb on - strand, within Psyr_4850 at 5757.417 kb on - strand, within Psyr_4850 at 5757.417 kb on - strand, within Psyr_4850 at 5757.437 kb on + strand at 5757.472 kb on + strand at 5757.472 kb on + strand at 5757.472 kb on + strand at 5757.472 kb on + strand at 5757.472 kb on + strand at 5757.473 kb on - strand at 5757.473 kb on - strand at 5757.473 kb on - strand at 5757.473 kb on - strand at 5757.473 kb on - strand at 5757.485 kb on - strand at 5757.509 kb on + strand at 5757.510 kb on - strand at 5757.510 kb on - strand at 5757.516 kb on + strand at 5757.517 kb on - strand at 5757.526 kb on - strand at 5757.526 kb on - strand at 5757.526 kb on - strand at 5757.642 kb on + strand at 5757.642 kb on + strand at 5757.642 kb on + strand at 5757.642 kb on + strand at 5757.642 kb on + strand at 5757.642 kb on + strand at 5757.643 kb on - strand at 5757.643 kb on - strand at 5757.643 kb on - strand at 5757.643 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Curcumin 10 mM remove 5,754,713 + +1.7 5,754,713 + +1.9 5,754,713 + -1.5 5,754,713 + -0.3 5,754,713 + +0.1 5,754,714 - -0.7 5,754,714 - +0.4 5,754,714 - +1.5 5,754,714 - +0.2 5,754,714 - -0.9 5,755,058 + Psyr_4848 0.41 +1.1 5,755,058 + Psyr_4848 0.41 -1.6 5,755,059 - Psyr_4848 0.41 +1.8 5,755,059 - Psyr_4848 0.41 -1.4 5,755,199 + Psyr_4848 0.56 +1.0 5,755,199 + Psyr_4848 0.56 +0.3 5,755,199 + Psyr_4848 0.56 +0.3 5,755,199 + Psyr_4848 0.56 +1.1 5,755,199 + Psyr_4848 0.56 +0.7 5,755,199 + Psyr_4848 0.56 -0.7 5,755,199 + Psyr_4848 0.56 +1.0 5,755,199 + Psyr_4848 0.56 +1.0 5,755,199 + Psyr_4848 0.56 +0.2 5,755,199 + Psyr_4848 0.56 +0.6 5,755,199 + Psyr_4848 0.56 -0.9 5,755,199 + Psyr_4848 0.56 -0.6 5,755,199 + Psyr_4848 0.56 -0.7 5,755,199 + Psyr_4848 0.56 +0.5 5,755,199 + Psyr_4848 0.56 -0.3 5,755,199 + Psyr_4848 0.56 -0.8 5,755,199 + Psyr_4848 0.56 -0.1 5,755,199 + Psyr_4848 0.56 -0.3 5,755,199 + Psyr_4848 0.56 -1.1 5,755,200 - Psyr_4848 0.56 +0.2 5,755,200 - Psyr_4848 0.56 +0.3 5,755,200 - Psyr_4848 0.56 +1.7 5,755,200 - Psyr_4848 0.56 -0.8 5,755,200 - Psyr_4848 0.56 -0.7 5,755,200 - Psyr_4848 0.56 +0.3 5,755,200 - Psyr_4848 0.56 -0.2 5,755,200 - Psyr_4848 0.56 +2.1 5,755,200 - Psyr_4848 0.56 -0.8 5,755,200 - Psyr_4848 0.56 -1.4 5,755,200 - Psyr_4848 0.56 -1.1 5,755,200 - Psyr_4848 0.56 +0.3 5,755,200 - Psyr_4848 0.56 -1.2 5,755,217 + Psyr_4848 0.58 +0.3 5,755,217 + Psyr_4848 0.58 -0.6 5,755,218 - Psyr_4848 0.58 +1.6 5,755,218 - Psyr_4848 0.58 +0.4 5,755,218 - Psyr_4848 0.58 -0.4 5,755,218 - Psyr_4848 0.58 +1.7 5,755,218 - Psyr_4848 0.58 -1.2 5,755,321 - Psyr_4848 0.69 +2.6 5,755,484 + Psyr_4848 0.86 -0.1 5,755,513 + Psyr_4848 0.89 +0.0 5,755,513 + Psyr_4848 0.89 +0.8 5,755,513 + Psyr_4848 0.89 -1.1 5,755,514 - Psyr_4848 0.89 -0.7 5,755,515 + Psyr_4848 0.89 -0.6 5,755,516 - Psyr_4848 0.89 +1.0 5,755,516 - Psyr_4848 0.89 -0.1 5,755,516 - Psyr_4848 0.89 -0.0 5,755,516 - Psyr_4848 0.89 -0.6 5,755,528 + -1.3 5,755,528 + +0.3 5,755,528 + +0.1 5,755,528 + -0.7 5,755,529 - +0.4 5,755,529 - +0.1 5,755,529 - -1.1 5,755,549 + +1.6 5,755,550 - -0.4 5,755,560 + +2.5 5,755,560 + +0.6 5,755,560 + +0.1 5,755,573 + -0.6 5,755,574 - +0.3 5,755,574 - -0.0 5,755,636 - -0.1 5,755,649 + -0.9 5,755,649 + -1.2 5,755,649 + -0.1 5,755,649 + -0.1 5,755,649 + +1.3 5,755,649 + +0.7 5,755,650 - +0.6 5,755,650 - +0.6 5,755,650 - +3.1 5,755,650 - +2.7 5,755,650 - -2.2 5,755,651 + +0.9 5,755,651 + -0.6 5,755,651 + +1.8 5,755,651 + +1.7 5,755,651 + -0.4 5,755,651 + -0.3 5,755,652 - -0.6 5,755,652 - +0.4 5,755,652 - -0.2 5,755,652 - -1.4 5,755,668 + +0.4 5,755,669 - -1.0 5,755,683 + -0.3 5,755,683 + -0.4 5,755,684 - +0.3 5,755,684 - -0.7 5,755,730 + +0.3 5,755,730 + -0.3 5,755,731 - -0.1 5,755,731 - +0.6 5,755,731 - +1.1 5,755,731 - +1.7 5,755,731 - -0.3 5,755,757 + +0.3 5,755,757 + -0.0 5,755,757 + -0.8 5,755,757 + +0.4 5,755,757 + -0.5 5,755,757 + -0.0 5,755,757 + -0.3 5,755,757 + -1.7 5,755,757 + -1.6 5,755,758 - -2.0 5,755,758 - -0.7 5,755,758 - -0.1 5,755,758 - -0.0 5,755,758 - -0.8 5,755,758 - -0.9 5,755,758 - +0.7 5,755,758 - -0.9 5,755,758 - -0.4 5,755,806 + Psyr_4849 0.11 +0.7 5,755,807 - Psyr_4849 0.11 -1.0 5,756,027 + Psyr_4849 0.35 +0.6 5,756,027 + Psyr_4849 0.35 +2.1 5,756,027 + Psyr_4849 0.35 +0.9 5,756,028 - Psyr_4849 0.35 +0.6 5,756,028 - Psyr_4849 0.35 +1.3 5,756,028 - Psyr_4849 0.35 -0.2 5,756,056 + Psyr_4849 0.38 +0.2 5,756,132 + Psyr_4849 0.46 -0.1 5,756,133 - Psyr_4849 0.46 +1.3 5,756,182 - Psyr_4849 0.51 -0.8 5,756,290 + Psyr_4849 0.63 -0.6 5,756,290 + Psyr_4849 0.63 +3.0 5,756,290 + Psyr_4849 0.63 +1.6 5,756,290 + Psyr_4849 0.63 +1.4 5,756,290 + Psyr_4849 0.63 +0.3 5,756,290 + Psyr_4849 0.63 -0.8 5,756,291 - Psyr_4849 0.63 +0.6 5,756,291 - Psyr_4849 0.63 -0.2 5,756,291 - Psyr_4849 0.63 -0.9 5,756,291 - Psyr_4849 0.63 -1.1 5,756,291 - Psyr_4849 0.63 +0.5 5,756,291 - Psyr_4849 0.63 -0.3 5,756,291 - Psyr_4849 0.63 +0.5 5,756,368 - Psyr_4849 0.71 -0.8 5,756,369 + Psyr_4849 0.71 +0.3 5,756,369 + Psyr_4849 0.71 +0.7 5,756,369 + Psyr_4849 0.71 +0.7 5,756,369 + Psyr_4849 0.71 +1.9 5,756,370 - Psyr_4849 0.71 -0.2 5,756,370 - Psyr_4849 0.71 +1.5 5,756,370 - Psyr_4849 0.71 +0.5 5,756,370 - Psyr_4849 0.71 -0.6 5,756,561 - -0.1 5,756,574 - +0.2 5,756,595 - +0.8 5,756,634 + -1.5 5,756,748 + -0.9 5,756,748 + -0.3 5,756,748 + -2.8 5,756,749 - -1.0 5,757,219 + Psyr_4850 0.59 +0.8 5,757,219 + Psyr_4850 0.59 +0.3 5,757,219 + Psyr_4850 0.59 -0.4 5,757,219 + Psyr_4850 0.59 -1.0 5,757,283 + Psyr_4850 0.69 -1.2 5,757,283 + Psyr_4850 0.69 +0.7 5,757,284 - Psyr_4850 0.69 -1.5 5,757,412 + Psyr_4850 0.88 -0.1 5,757,413 - Psyr_4850 0.88 -1.5 5,757,413 - Psyr_4850 0.88 +0.3 5,757,413 - Psyr_4850 0.88 +0.7 5,757,417 - Psyr_4850 0.89 +0.8 5,757,417 - Psyr_4850 0.89 +0.1 5,757,417 - Psyr_4850 0.89 +0.7 5,757,437 + -0.6 5,757,472 + +1.0 5,757,472 + -1.1 5,757,472 + +2.1 5,757,472 + +0.2 5,757,472 + -0.0 5,757,473 - +0.4 5,757,473 - +0.2 5,757,473 - +0.2 5,757,473 - -0.3 5,757,473 - +0.9 5,757,485 - +0.3 5,757,509 + +2.0 5,757,510 - +0.8 5,757,510 - +0.7 5,757,516 + -0.8 5,757,517 - -0.8 5,757,526 - -1.6 5,757,526 - +0.1 5,757,526 - -0.5 5,757,642 + -0.4 5,757,642 + +0.1 5,757,642 + +1.7 5,757,642 + -0.6 5,757,642 + +1.0 5,757,642 + +2.5 5,757,643 - +0.3 5,757,643 - -0.1 5,757,643 - +0.0 5,757,643 - +1.6
Or see this region's nucleotide sequence