Experiment: KB with Curcumin 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4788 and Psyr_4789 are separated by 334 nucleotides Psyr_4789 and Psyr_4790 are separated by 27 nucleotides Psyr_4790 and Psyr_4791 are separated by 22 nucleotides
Psyr_4788: Psyr_4788 - lipoprotein, putative, at 5,676,236 to 5,676,562
_4788
Psyr_4789: Psyr_4789 - lipoprotein, putative, at 5,676,897 to 5,677,127
_4789
Psyr_4790: Psyr_4790 - phosphoglycerate kinase, at 5,677,155 to 5,678,318
_4790
Psyr_4791: Psyr_4791 - D-erythrose-4-phosphate dehydrogenase, at 5,678,341 to 5,679,384
_4791
Position (kb) 5677
5678
5679 Strain fitness (log2 ratio) -1
0
1
2
3 at 5676.170 kb on - strand at 5676.192 kb on - strand at 5676.192 kb on - strand at 5676.192 kb on - strand at 5676.192 kb on - strand at 5676.194 kb on - strand at 5676.194 kb on - strand at 5676.194 kb on - strand at 5676.194 kb on - strand at 5676.194 kb on - strand at 5676.194 kb on - strand at 5676.194 kb on - strand at 5676.194 kb on - strand at 5676.194 kb on - strand at 5676.194 kb on - strand at 5676.194 kb on - strand at 5676.238 kb on - strand at 5676.238 kb on - strand at 5676.286 kb on - strand, within Psyr_4788 at 5676.468 kb on - strand, within Psyr_4788 at 5676.564 kb on - strand at 5676.564 kb on - strand at 5676.564 kb on - strand at 5676.564 kb on - strand at 5676.564 kb on - strand at 5676.564 kb on - strand at 5676.564 kb on - strand at 5676.775 kb on - strand at 5676.775 kb on - strand at 5676.775 kb on - strand at 5676.775 kb on - strand at 5676.838 kb on - strand at 5676.909 kb on + strand at 5676.910 kb on - strand at 5676.910 kb on - strand at 5676.910 kb on - strand at 5676.910 kb on - strand at 5676.910 kb on - strand at 5676.910 kb on - strand at 5676.910 kb on - strand at 5676.910 kb on - strand at 5676.910 kb on - strand at 5676.910 kb on - strand at 5676.910 kb on - strand at 5676.910 kb on - strand at 5676.910 kb on - strand at 5676.910 kb on - strand at 5676.910 kb on - strand at 5676.949 kb on - strand, within Psyr_4789 at 5676.949 kb on - strand, within Psyr_4789 at 5676.949 kb on - strand, within Psyr_4789 at 5676.949 kb on - strand, within Psyr_4789 at 5676.971 kb on - strand, within Psyr_4789 at 5676.971 kb on - strand, within Psyr_4789 at 5677.017 kb on + strand, within Psyr_4789 at 5677.018 kb on - strand, within Psyr_4789 at 5677.090 kb on - strand, within Psyr_4789 at 5677.384 kb on - strand, within Psyr_4790 at 5678.623 kb on - strand, within Psyr_4791 at 5678.623 kb on - strand, within Psyr_4791 at 5679.174 kb on - strand, within Psyr_4791
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Curcumin 10 mM remove 5,676,170 - -0.5 5,676,192 - +3.1 5,676,192 - +2.9 5,676,192 - -0.5 5,676,192 - +0.1 5,676,194 - +0.3 5,676,194 - -0.9 5,676,194 - -0.6 5,676,194 - -0.7 5,676,194 - -0.4 5,676,194 - -0.1 5,676,194 - +0.4 5,676,194 - +0.4 5,676,194 - +1.3 5,676,194 - -0.1 5,676,194 - -0.3 5,676,238 - +0.0 5,676,238 - +0.9 5,676,286 - Psyr_4788 0.15 -0.4 5,676,468 - Psyr_4788 0.71 +0.4 5,676,564 - -0.3 5,676,564 - -0.8 5,676,564 - -0.2 5,676,564 - +0.1 5,676,564 - +0.0 5,676,564 - -0.9 5,676,564 - +2.0 5,676,775 - -0.3 5,676,775 - -0.8 5,676,775 - -0.4 5,676,775 - -0.5 5,676,838 - -1.1 5,676,909 + +0.6 5,676,910 - -0.8 5,676,910 - +0.9 5,676,910 - +0.2 5,676,910 - +0.2 5,676,910 - +1.3 5,676,910 - -0.1 5,676,910 - -0.2 5,676,910 - -0.1 5,676,910 - +1.0 5,676,910 - +0.8 5,676,910 - -1.1 5,676,910 - -1.6 5,676,910 - -0.0 5,676,910 - -1.5 5,676,910 - +0.2 5,676,949 - Psyr_4789 0.23 +2.9 5,676,949 - Psyr_4789 0.23 +1.1 5,676,949 - Psyr_4789 0.23 -1.3 5,676,949 - Psyr_4789 0.23 +0.6 5,676,971 - Psyr_4789 0.32 +1.1 5,676,971 - Psyr_4789 0.32 -0.5 5,677,017 + Psyr_4789 0.52 +0.1 5,677,018 - Psyr_4789 0.52 -0.3 5,677,090 - Psyr_4789 0.84 +2.1 5,677,384 - Psyr_4790 0.20 -0.4 5,678,623 - Psyr_4791 0.27 +2.7 5,678,623 - Psyr_4791 0.27 -0.1 5,679,174 - Psyr_4791 0.80 +0.1
Or see this region's nucleotide sequence