Experiment: KB with Curcumin 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4773 and Psyr_4774 are separated by 119 nucleotides Psyr_4774 and Psyr_4775 are separated by 257 nucleotides Psyr_4775 and Psyr_4776 are separated by 309 nucleotides
Psyr_4773: Psyr_4773 - Hypothetical protein, at 5,651,796 to 5,652,026
_4773
Psyr_4774: Psyr_4774 - Hypothetical protein, at 5,652,146 to 5,652,412
_4774
Psyr_4775: Psyr_4775 - Ferredoxin:Oxidoreductase FAD/NAD(P)-binding:Oxidoreductase FAD-binding region, at 5,652,670 to 5,653,770
_4775
Psyr_4776: Psyr_4776 - Rieske [2Fe-2S] region, at 5,654,080 to 5,655,378
_4776
Position (kb) 5652
5653
5654 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5651.709 kb on - strand at 5651.720 kb on + strand at 5651.720 kb on + strand at 5651.721 kb on - strand at 5651.723 kb on + strand at 5651.723 kb on + strand at 5651.724 kb on - strand at 5651.724 kb on - strand at 5651.751 kb on - strand at 5651.784 kb on + strand at 5651.784 kb on + strand at 5651.785 kb on - strand at 5651.801 kb on - strand at 5652.005 kb on - strand at 5652.005 kb on - strand at 5652.054 kb on + strand at 5652.054 kb on + strand at 5652.301 kb on - strand, within Psyr_4774 at 5652.301 kb on - strand, within Psyr_4774 at 5652.301 kb on - strand, within Psyr_4774 at 5652.386 kb on + strand at 5652.386 kb on + strand at 5652.386 kb on + strand at 5652.387 kb on - strand at 5652.387 kb on - strand at 5652.387 kb on - strand at 5652.411 kb on - strand at 5652.442 kb on + strand at 5652.510 kb on + strand at 5652.510 kb on + strand at 5652.581 kb on - strand at 5652.655 kb on + strand at 5652.655 kb on + strand at 5652.655 kb on + strand at 5652.655 kb on + strand at 5652.656 kb on - strand at 5652.674 kb on + strand at 5652.722 kb on + strand at 5652.722 kb on + strand at 5652.722 kb on + strand at 5652.722 kb on + strand at 5652.722 kb on + strand at 5652.723 kb on - strand at 5652.723 kb on - strand at 5652.723 kb on - strand at 5652.723 kb on - strand at 5652.723 kb on - strand at 5652.793 kb on - strand, within Psyr_4775 at 5652.793 kb on - strand, within Psyr_4775 at 5653.031 kb on + strand, within Psyr_4775 at 5653.085 kb on + strand, within Psyr_4775 at 5653.085 kb on + strand, within Psyr_4775 at 5653.085 kb on + strand, within Psyr_4775 at 5653.085 kb on + strand, within Psyr_4775 at 5653.085 kb on + strand, within Psyr_4775 at 5653.086 kb on - strand, within Psyr_4775 at 5653.086 kb on - strand, within Psyr_4775 at 5653.086 kb on - strand, within Psyr_4775 at 5653.268 kb on + strand, within Psyr_4775 at 5653.268 kb on + strand, within Psyr_4775 at 5653.268 kb on + strand, within Psyr_4775 at 5653.268 kb on + strand, within Psyr_4775 at 5653.269 kb on - strand, within Psyr_4775 at 5653.269 kb on - strand, within Psyr_4775 at 5653.269 kb on - strand, within Psyr_4775 at 5653.334 kb on + strand, within Psyr_4775 at 5653.334 kb on + strand, within Psyr_4775 at 5653.335 kb on - strand, within Psyr_4775 at 5653.388 kb on + strand, within Psyr_4775 at 5653.388 kb on + strand, within Psyr_4775 at 5653.388 kb on + strand, within Psyr_4775 at 5653.389 kb on - strand, within Psyr_4775 at 5653.445 kb on - strand, within Psyr_4775 at 5653.484 kb on + strand, within Psyr_4775 at 5653.484 kb on + strand, within Psyr_4775 at 5653.484 kb on + strand, within Psyr_4775 at 5653.485 kb on - strand, within Psyr_4775 at 5653.485 kb on - strand, within Psyr_4775 at 5653.485 kb on - strand, within Psyr_4775 at 5653.536 kb on - strand, within Psyr_4775 at 5653.565 kb on + strand, within Psyr_4775 at 5653.565 kb on + strand, within Psyr_4775 at 5653.565 kb on + strand, within Psyr_4775 at 5653.565 kb on + strand, within Psyr_4775 at 5653.566 kb on - strand, within Psyr_4775 at 5653.566 kb on - strand, within Psyr_4775 at 5653.566 kb on - strand, within Psyr_4775 at 5653.708 kb on + strand at 5653.708 kb on + strand at 5653.708 kb on + strand at 5653.709 kb on - strand at 5653.709 kb on - strand at 5653.709 kb on - strand at 5653.770 kb on + strand at 5653.770 kb on + strand at 5653.771 kb on - strand at 5653.771 kb on - strand at 5653.771 kb on - strand at 5653.771 kb on - strand at 5653.771 kb on - strand at 5653.771 kb on - strand at 5653.840 kb on + strand at 5653.840 kb on + strand at 5653.840 kb on + strand at 5653.840 kb on + strand at 5653.840 kb on + strand at 5653.840 kb on + strand at 5653.841 kb on - strand at 5653.844 kb on + strand at 5653.844 kb on + strand at 5653.845 kb on - strand at 5653.845 kb on - strand at 5653.845 kb on - strand at 5653.861 kb on + strand at 5653.861 kb on + strand at 5653.861 kb on + strand at 5653.861 kb on + strand at 5653.861 kb on + strand at 5653.862 kb on - strand at 5653.862 kb on - strand at 5653.862 kb on - strand at 5653.862 kb on - strand at 5653.862 kb on - strand at 5653.862 kb on - strand at 5653.865 kb on + strand at 5653.933 kb on + strand at 5653.978 kb on + strand at 5653.978 kb on + strand at 5653.979 kb on - strand at 5653.979 kb on - strand at 5653.979 kb on - strand at 5653.997 kb on + strand at 5653.997 kb on + strand at 5653.997 kb on + strand at 5653.998 kb on - strand at 5653.998 kb on - strand at 5653.998 kb on - strand at 5653.998 kb on - strand at 5653.998 kb on - strand at 5653.998 kb on - strand at 5654.074 kb on + strand at 5654.075 kb on - strand at 5654.075 kb on - strand at 5654.171 kb on - strand at 5654.191 kb on + strand at 5654.191 kb on + strand at 5654.290 kb on + strand, within Psyr_4776 at 5654.290 kb on + strand, within Psyr_4776 at 5654.291 kb on - strand, within Psyr_4776 at 5654.291 kb on - strand, within Psyr_4776 at 5654.291 kb on - strand, within Psyr_4776 at 5654.452 kb on + strand, within Psyr_4776 at 5654.452 kb on + strand, within Psyr_4776 at 5654.452 kb on + strand, within Psyr_4776 at 5654.452 kb on + strand, within Psyr_4776 at 5654.452 kb on + strand, within Psyr_4776 at 5654.452 kb on + strand, within Psyr_4776 at 5654.452 kb on + strand, within Psyr_4776 at 5654.452 kb on + strand, within Psyr_4776 at 5654.452 kb on + strand, within Psyr_4776 at 5654.452 kb on + strand, within Psyr_4776 at 5654.452 kb on + strand, within Psyr_4776 at 5654.452 kb on + strand, within Psyr_4776 at 5654.452 kb on + strand, within Psyr_4776 at 5654.453 kb on - strand, within Psyr_4776 at 5654.453 kb on - strand, within Psyr_4776 at 5654.453 kb on - strand, within Psyr_4776 at 5654.453 kb on - strand, within Psyr_4776 at 5654.453 kb on - strand, within Psyr_4776 at 5654.453 kb on - strand, within Psyr_4776 at 5654.476 kb on + strand, within Psyr_4776 at 5654.477 kb on - strand, within Psyr_4776 at 5654.477 kb on - strand, within Psyr_4776 at 5654.557 kb on + strand, within Psyr_4776 at 5654.623 kb on + strand, within Psyr_4776 at 5654.623 kb on + strand, within Psyr_4776 at 5654.623 kb on + strand, within Psyr_4776 at 5654.624 kb on - strand, within Psyr_4776 at 5654.624 kb on - strand, within Psyr_4776 at 5654.624 kb on - strand, within Psyr_4776 at 5654.624 kb on - strand, within Psyr_4776 at 5654.624 kb on - strand, within Psyr_4776 at 5654.624 kb on - strand, within Psyr_4776 at 5654.635 kb on + strand, within Psyr_4776 at 5654.635 kb on + strand, within Psyr_4776 at 5654.636 kb on - strand, within Psyr_4776
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Curcumin 10 mM remove 5,651,709 - +0.2 5,651,720 + +1.4 5,651,720 + +1.1 5,651,721 - -0.4 5,651,723 + -1.9 5,651,723 + +0.1 5,651,724 - -1.3 5,651,724 - -0.5 5,651,751 - -2.1 5,651,784 + -0.5 5,651,784 + -0.6 5,651,785 - +0.5 5,651,801 - -1.8 5,652,005 - +0.1 5,652,005 - -1.9 5,652,054 + -0.1 5,652,054 + -0.7 5,652,301 - Psyr_4774 0.58 +0.2 5,652,301 - Psyr_4774 0.58 -1.8 5,652,301 - Psyr_4774 0.58 -0.8 5,652,386 + -0.6 5,652,386 + +0.9 5,652,386 + -0.3 5,652,387 - -0.5 5,652,387 - +0.3 5,652,387 - -2.0 5,652,411 - +0.2 5,652,442 + -1.8 5,652,510 + -0.9 5,652,510 + -1.3 5,652,581 - +0.1 5,652,655 + +0.4 5,652,655 + +1.3 5,652,655 + -0.5 5,652,655 + +0.9 5,652,656 - -1.6 5,652,674 + +0.9 5,652,722 + +1.0 5,652,722 + -2.0 5,652,722 + -1.3 5,652,722 + -1.1 5,652,722 + -0.1 5,652,723 - +0.7 5,652,723 - -0.1 5,652,723 - -0.1 5,652,723 - -1.0 5,652,723 - +0.1 5,652,793 - Psyr_4775 0.11 -0.7 5,652,793 - Psyr_4775 0.11 -0.4 5,653,031 + Psyr_4775 0.33 +0.3 5,653,085 + Psyr_4775 0.38 +0.2 5,653,085 + Psyr_4775 0.38 -0.5 5,653,085 + Psyr_4775 0.38 +0.7 5,653,085 + Psyr_4775 0.38 -0.2 5,653,085 + Psyr_4775 0.38 -1.3 5,653,086 - Psyr_4775 0.38 -0.9 5,653,086 - Psyr_4775 0.38 +0.4 5,653,086 - Psyr_4775 0.38 -1.2 5,653,268 + Psyr_4775 0.54 -0.7 5,653,268 + Psyr_4775 0.54 -0.7 5,653,268 + Psyr_4775 0.54 +1.1 5,653,268 + Psyr_4775 0.54 -0.5 5,653,269 - Psyr_4775 0.54 -1.4 5,653,269 - Psyr_4775 0.54 -1.1 5,653,269 - Psyr_4775 0.54 -0.0 5,653,334 + Psyr_4775 0.60 +0.4 5,653,334 + Psyr_4775 0.60 -0.7 5,653,335 - Psyr_4775 0.60 +0.4 5,653,388 + Psyr_4775 0.65 +0.0 5,653,388 + Psyr_4775 0.65 +0.0 5,653,388 + Psyr_4775 0.65 +1.0 5,653,389 - Psyr_4775 0.65 -0.1 5,653,445 - Psyr_4775 0.70 -0.5 5,653,484 + Psyr_4775 0.74 -0.9 5,653,484 + Psyr_4775 0.74 +0.3 5,653,484 + Psyr_4775 0.74 +0.2 5,653,485 - Psyr_4775 0.74 -1.9 5,653,485 - Psyr_4775 0.74 -0.8 5,653,485 - Psyr_4775 0.74 +1.1 5,653,536 - Psyr_4775 0.79 +0.4 5,653,565 + Psyr_4775 0.81 -0.9 5,653,565 + Psyr_4775 0.81 -0.3 5,653,565 + Psyr_4775 0.81 +0.4 5,653,565 + Psyr_4775 0.81 -2.8 5,653,566 - Psyr_4775 0.81 -1.4 5,653,566 - Psyr_4775 0.81 +1.9 5,653,566 - Psyr_4775 0.81 +0.0 5,653,708 + +0.9 5,653,708 + -0.6 5,653,708 + -1.5 5,653,709 - +0.3 5,653,709 - +0.3 5,653,709 - -1.8 5,653,770 + -0.2 5,653,770 + -0.7 5,653,771 - -0.6 5,653,771 - -0.2 5,653,771 - -0.3 5,653,771 - +0.3 5,653,771 - +0.6 5,653,771 - -0.4 5,653,840 + -0.2 5,653,840 + -0.1 5,653,840 + +0.7 5,653,840 + +1.3 5,653,840 + +1.0 5,653,840 + -0.2 5,653,841 - +0.5 5,653,844 + -0.2 5,653,844 + +0.9 5,653,845 - -0.9 5,653,845 - +0.2 5,653,845 - -0.1 5,653,861 + -1.0 5,653,861 + +0.3 5,653,861 + -1.1 5,653,861 + +0.1 5,653,861 + -0.0 5,653,862 - +0.2 5,653,862 - +0.6 5,653,862 - +0.5 5,653,862 - +0.3 5,653,862 - -0.7 5,653,862 - -0.7 5,653,865 + -1.0 5,653,933 + -1.5 5,653,978 + -0.3 5,653,978 + -0.0 5,653,979 - +3.1 5,653,979 - -1.4 5,653,979 - -0.2 5,653,997 + -1.0 5,653,997 + -1.6 5,653,997 + -0.3 5,653,998 - +0.1 5,653,998 - +2.4 5,653,998 - -0.1 5,653,998 - +0.8 5,653,998 - +0.6 5,653,998 - -0.5 5,654,074 + -0.3 5,654,075 - -0.1 5,654,075 - +0.7 5,654,171 - -1.5 5,654,191 + -1.4 5,654,191 + -0.1 5,654,290 + Psyr_4776 0.16 +1.3 5,654,290 + Psyr_4776 0.16 +1.1 5,654,291 - Psyr_4776 0.16 -0.9 5,654,291 - Psyr_4776 0.16 +1.2 5,654,291 - Psyr_4776 0.16 +3.3 5,654,452 + Psyr_4776 0.29 +1.4 5,654,452 + Psyr_4776 0.29 +0.9 5,654,452 + Psyr_4776 0.29 +0.4 5,654,452 + Psyr_4776 0.29 +0.4 5,654,452 + Psyr_4776 0.29 +2.7 5,654,452 + Psyr_4776 0.29 -1.9 5,654,452 + Psyr_4776 0.29 -0.3 5,654,452 + Psyr_4776 0.29 +0.3 5,654,452 + Psyr_4776 0.29 -0.4 5,654,452 + Psyr_4776 0.29 -1.3 5,654,452 + Psyr_4776 0.29 -1.4 5,654,452 + Psyr_4776 0.29 -0.9 5,654,452 + Psyr_4776 0.29 +0.0 5,654,453 - Psyr_4776 0.29 -0.6 5,654,453 - Psyr_4776 0.29 -0.6 5,654,453 - Psyr_4776 0.29 +0.3 5,654,453 - Psyr_4776 0.29 +0.4 5,654,453 - Psyr_4776 0.29 -0.9 5,654,453 - Psyr_4776 0.29 +1.5 5,654,476 + Psyr_4776 0.30 -0.6 5,654,477 - Psyr_4776 0.31 -0.0 5,654,477 - Psyr_4776 0.31 +0.0 5,654,557 + Psyr_4776 0.37 -0.5 5,654,623 + Psyr_4776 0.42 +0.5 5,654,623 + Psyr_4776 0.42 -0.6 5,654,623 + Psyr_4776 0.42 -0.4 5,654,624 - Psyr_4776 0.42 +0.3 5,654,624 - Psyr_4776 0.42 +0.3 5,654,624 - Psyr_4776 0.42 -0.9 5,654,624 - Psyr_4776 0.42 +0.3 5,654,624 - Psyr_4776 0.42 +0.5 5,654,624 - Psyr_4776 0.42 -0.5 5,654,635 + Psyr_4776 0.43 +0.6 5,654,635 + Psyr_4776 0.43 +0.1 5,654,636 - Psyr_4776 0.43 -0.6
Or see this region's nucleotide sequence