Experiment: KB with Curcumin 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4753 and Psyr_4754 overlap by 1 nucleotides Psyr_4754 and Psyr_4755 are separated by 267 nucleotides Psyr_4755 and Psyr_4756 are separated by 7 nucleotides Psyr_4756 and Psyr_4757 are separated by 54 nucleotides
Psyr_4753: Psyr_4753 - Insulinase-like:Peptidase M16, C-terminal, at 5,629,557 to 5,631,047
_4753
Psyr_4754: Psyr_4754 - 16S rRNA m(2)G-966 methyltransferase, at 5,631,047 to 5,631,637
_4754
Psyr_4755: Psyr_4755 - hydrolase, alpha/beta fold family, at 5,631,905 to 5,632,939
_4755
Psyr_4756: Psyr_4756 - 3-mercaptopyruvate sulfurtransferase, at 5,632,947 to 5,633,801
_4756
Psyr_4757: Psyr_4757 - transcriptional regulator, TetR family, at 5,633,856 to 5,634,518
_4757
Position (kb) 5631
5632
5633 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5630.972 kb on + strand at 5631.094 kb on + strand at 5631.204 kb on - strand, within Psyr_4754 at 5631.522 kb on - strand, within Psyr_4754 at 5631.522 kb on - strand, within Psyr_4754 at 5631.522 kb on - strand, within Psyr_4754 at 5631.605 kb on + strand at 5631.605 kb on + strand at 5631.605 kb on + strand at 5631.605 kb on + strand at 5631.605 kb on + strand at 5631.606 kb on - strand at 5631.606 kb on - strand at 5631.606 kb on - strand at 5631.608 kb on + strand at 5631.647 kb on + strand at 5631.647 kb on + strand at 5631.647 kb on + strand at 5631.648 kb on - strand at 5631.648 kb on - strand at 5631.739 kb on + strand at 5631.739 kb on + strand at 5631.739 kb on + strand at 5631.739 kb on + strand at 5631.739 kb on + strand at 5631.739 kb on + strand at 5631.740 kb on - strand at 5631.740 kb on - strand at 5631.740 kb on - strand at 5631.740 kb on - strand at 5631.743 kb on + strand at 5631.743 kb on + strand at 5631.743 kb on + strand at 5631.744 kb on - strand at 5631.818 kb on + strand at 5631.818 kb on + strand at 5631.818 kb on + strand at 5631.818 kb on + strand at 5631.818 kb on + strand at 5631.818 kb on + strand at 5631.818 kb on + strand at 5631.819 kb on - strand at 5631.819 kb on - strand at 5631.819 kb on - strand at 5631.819 kb on - strand at 5631.819 kb on - strand at 5631.839 kb on + strand at 5631.839 kb on + strand at 5631.839 kb on + strand at 5631.839 kb on + strand at 5631.839 kb on + strand at 5631.839 kb on + strand at 5631.840 kb on - strand at 5631.840 kb on - strand at 5631.840 kb on - strand at 5631.840 kb on - strand at 5631.840 kb on - strand at 5631.840 kb on - strand at 5631.840 kb on - strand at 5631.840 kb on - strand at 5631.855 kb on + strand at 5631.855 kb on + strand at 5631.855 kb on + strand at 5631.866 kb on + strand at 5631.866 kb on + strand at 5631.866 kb on + strand at 5631.866 kb on + strand at 5631.866 kb on + strand at 5631.866 kb on + strand at 5631.866 kb on + strand at 5631.866 kb on + strand at 5631.866 kb on + strand at 5631.866 kb on + strand at 5631.866 kb on + strand at 5631.866 kb on + strand at 5631.866 kb on + strand at 5631.866 kb on + strand at 5631.867 kb on - strand at 5631.867 kb on - strand at 5631.867 kb on - strand at 5631.867 kb on - strand at 5631.867 kb on - strand at 5631.867 kb on - strand at 5631.867 kb on - strand at 5631.867 kb on - strand at 5631.867 kb on - strand at 5631.867 kb on - strand at 5631.867 kb on - strand at 5631.920 kb on - strand at 5632.151 kb on + strand, within Psyr_4755 at 5632.151 kb on + strand, within Psyr_4755 at 5632.151 kb on + strand, within Psyr_4755 at 5632.151 kb on + strand, within Psyr_4755 at 5632.254 kb on - strand, within Psyr_4755 at 5632.254 kb on - strand, within Psyr_4755 at 5632.254 kb on - strand, within Psyr_4755 at 5632.329 kb on - strand, within Psyr_4755 at 5632.329 kb on - strand, within Psyr_4755 at 5632.370 kb on + strand, within Psyr_4755 at 5632.370 kb on + strand, within Psyr_4755 at 5632.370 kb on + strand, within Psyr_4755 at 5632.371 kb on - strand, within Psyr_4755 at 5632.371 kb on - strand, within Psyr_4755 at 5632.371 kb on - strand, within Psyr_4755 at 5632.371 kb on - strand, within Psyr_4755 at 5632.514 kb on + strand, within Psyr_4755 at 5632.514 kb on + strand, within Psyr_4755 at 5632.514 kb on + strand, within Psyr_4755 at 5632.514 kb on + strand, within Psyr_4755 at 5632.514 kb on + strand, within Psyr_4755 at 5632.514 kb on + strand, within Psyr_4755 at 5632.514 kb on + strand, within Psyr_4755 at 5632.514 kb on + strand, within Psyr_4755 at 5632.514 kb on + strand, within Psyr_4755 at 5632.514 kb on + strand, within Psyr_4755 at 5632.514 kb on + strand, within Psyr_4755 at 5632.514 kb on + strand, within Psyr_4755 at 5632.514 kb on + strand, within Psyr_4755 at 5632.515 kb on - strand, within Psyr_4755 at 5632.515 kb on - strand, within Psyr_4755 at 5632.515 kb on - strand, within Psyr_4755 at 5632.515 kb on - strand, within Psyr_4755 at 5632.515 kb on - strand, within Psyr_4755 at 5632.515 kb on - strand, within Psyr_4755 at 5632.515 kb on - strand, within Psyr_4755 at 5632.515 kb on - strand, within Psyr_4755 at 5632.515 kb on - strand, within Psyr_4755 at 5632.515 kb on - strand, within Psyr_4755 at 5632.515 kb on - strand, within Psyr_4755 at 5632.515 kb on - strand, within Psyr_4755 at 5632.515 kb on - strand, within Psyr_4755 at 5632.515 kb on - strand, within Psyr_4755 at 5632.516 kb on + strand, within Psyr_4755 at 5632.670 kb on + strand, within Psyr_4755 at 5632.674 kb on - strand, within Psyr_4755 at 5632.695 kb on - strand, within Psyr_4755 at 5632.697 kb on + strand, within Psyr_4755 at 5632.698 kb on - strand, within Psyr_4755 at 5632.698 kb on - strand, within Psyr_4755 at 5632.698 kb on - strand, within Psyr_4755 at 5632.698 kb on - strand, within Psyr_4755 at 5632.698 kb on - strand, within Psyr_4755 at 5632.868 kb on + strand at 5632.869 kb on - strand at 5632.871 kb on + strand at 5632.871 kb on + strand at 5632.872 kb on - strand at 5632.872 kb on - strand at 5632.900 kb on - strand at 5633.008 kb on + strand at 5633.009 kb on - strand at 5633.009 kb on - strand at 5633.009 kb on - strand at 5633.009 kb on - strand at 5633.009 kb on - strand at 5633.083 kb on + strand, within Psyr_4756 at 5633.214 kb on - strand, within Psyr_4756 at 5633.214 kb on - strand, within Psyr_4756 at 5633.241 kb on + strand, within Psyr_4756 at 5633.241 kb on + strand, within Psyr_4756 at 5633.241 kb on + strand, within Psyr_4756 at 5633.242 kb on - strand, within Psyr_4756 at 5633.444 kb on - strand, within Psyr_4756 at 5633.497 kb on + strand, within Psyr_4756 at 5633.497 kb on + strand, within Psyr_4756 at 5633.497 kb on + strand, within Psyr_4756 at 5633.497 kb on + strand, within Psyr_4756 at 5633.497 kb on + strand, within Psyr_4756 at 5633.497 kb on + strand, within Psyr_4756 at 5633.497 kb on + strand, within Psyr_4756 at 5633.497 kb on + strand, within Psyr_4756 at 5633.498 kb on - strand, within Psyr_4756 at 5633.498 kb on - strand, within Psyr_4756 at 5633.518 kb on + strand, within Psyr_4756 at 5633.518 kb on + strand, within Psyr_4756 at 5633.518 kb on + strand, within Psyr_4756 at 5633.519 kb on - strand, within Psyr_4756 at 5633.684 kb on - strand, within Psyr_4756
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Curcumin 10 mM remove 5,630,972 + +0.4 5,631,094 + -3.0 5,631,204 - Psyr_4754 0.27 +1.3 5,631,522 - Psyr_4754 0.80 +0.6 5,631,522 - Psyr_4754 0.80 -1.5 5,631,522 - Psyr_4754 0.80 -1.5 5,631,605 + +2.1 5,631,605 + +0.1 5,631,605 + +0.9 5,631,605 + -0.4 5,631,605 + -2.1 5,631,606 - +0.8 5,631,606 - -2.2 5,631,606 - -0.5 5,631,608 + +0.4 5,631,647 + +0.1 5,631,647 + -1.0 5,631,647 + -1.5 5,631,648 - -0.5 5,631,648 - +0.7 5,631,739 + +1.1 5,631,739 + +0.6 5,631,739 + -1.0 5,631,739 + -1.3 5,631,739 + -0.4 5,631,739 + +0.6 5,631,740 - +2.0 5,631,740 - -0.0 5,631,740 - +0.6 5,631,740 - +0.3 5,631,743 + +1.5 5,631,743 + +0.4 5,631,743 + +0.1 5,631,744 - +0.4 5,631,818 + -3.2 5,631,818 + -0.0 5,631,818 + -0.6 5,631,818 + -0.5 5,631,818 + -0.1 5,631,818 + +0.8 5,631,818 + -0.6 5,631,819 - -0.2 5,631,819 - +0.1 5,631,819 - +0.2 5,631,819 - -0.7 5,631,819 - -1.3 5,631,839 + -1.1 5,631,839 + -0.1 5,631,839 + -0.1 5,631,839 + -0.9 5,631,839 + +0.1 5,631,839 + +0.4 5,631,840 - +1.1 5,631,840 - +0.3 5,631,840 - -0.1 5,631,840 - +0.5 5,631,840 - +0.4 5,631,840 - +1.1 5,631,840 - -0.1 5,631,840 - -1.5 5,631,855 + +3.7 5,631,855 + +2.3 5,631,855 + +0.1 5,631,866 + -0.6 5,631,866 + -1.9 5,631,866 + +0.1 5,631,866 + -0.3 5,631,866 + -0.5 5,631,866 + -0.4 5,631,866 + +1.1 5,631,866 + +0.5 5,631,866 + +0.4 5,631,866 + -0.2 5,631,866 + -0.4 5,631,866 + +1.1 5,631,866 + -0.3 5,631,866 + -0.1 5,631,867 - -0.7 5,631,867 - -0.8 5,631,867 - +0.2 5,631,867 - -1.1 5,631,867 - +0.8 5,631,867 - +0.3 5,631,867 - +0.3 5,631,867 - -1.4 5,631,867 - +0.9 5,631,867 - +0.5 5,631,867 - -0.1 5,631,920 - -1.4 5,632,151 + Psyr_4755 0.24 -1.1 5,632,151 + Psyr_4755 0.24 -2.8 5,632,151 + Psyr_4755 0.24 +1.5 5,632,151 + Psyr_4755 0.24 +1.8 5,632,254 - Psyr_4755 0.34 -1.4 5,632,254 - Psyr_4755 0.34 +3.9 5,632,254 - Psyr_4755 0.34 -0.8 5,632,329 - Psyr_4755 0.41 -1.0 5,632,329 - Psyr_4755 0.41 -0.3 5,632,370 + Psyr_4755 0.45 -1.2 5,632,370 + Psyr_4755 0.45 +0.5 5,632,370 + Psyr_4755 0.45 -0.5 5,632,371 - Psyr_4755 0.45 -0.5 5,632,371 - Psyr_4755 0.45 -0.5 5,632,371 - Psyr_4755 0.45 -0.2 5,632,371 - Psyr_4755 0.45 +1.8 5,632,514 + Psyr_4755 0.59 +0.9 5,632,514 + Psyr_4755 0.59 -2.3 5,632,514 + Psyr_4755 0.59 -1.6 5,632,514 + Psyr_4755 0.59 +2.1 5,632,514 + Psyr_4755 0.59 -0.2 5,632,514 + Psyr_4755 0.59 -0.7 5,632,514 + Psyr_4755 0.59 +0.2 5,632,514 + Psyr_4755 0.59 -0.3 5,632,514 + Psyr_4755 0.59 -1.0 5,632,514 + Psyr_4755 0.59 -1.9 5,632,514 + Psyr_4755 0.59 -0.4 5,632,514 + Psyr_4755 0.59 -2.5 5,632,514 + Psyr_4755 0.59 -0.4 5,632,515 - Psyr_4755 0.59 +0.3 5,632,515 - Psyr_4755 0.59 +1.6 5,632,515 - Psyr_4755 0.59 +1.4 5,632,515 - Psyr_4755 0.59 +0.5 5,632,515 - Psyr_4755 0.59 +0.2 5,632,515 - Psyr_4755 0.59 -0.7 5,632,515 - Psyr_4755 0.59 -0.6 5,632,515 - Psyr_4755 0.59 -0.9 5,632,515 - Psyr_4755 0.59 +0.5 5,632,515 - Psyr_4755 0.59 -0.2 5,632,515 - Psyr_4755 0.59 -0.1 5,632,515 - Psyr_4755 0.59 -0.6 5,632,515 - Psyr_4755 0.59 +0.3 5,632,515 - Psyr_4755 0.59 +1.0 5,632,516 + Psyr_4755 0.59 -0.1 5,632,670 + Psyr_4755 0.74 -0.1 5,632,674 - Psyr_4755 0.74 -0.2 5,632,695 - Psyr_4755 0.76 +1.3 5,632,697 + Psyr_4755 0.77 -0.5 5,632,698 - Psyr_4755 0.77 +1.3 5,632,698 - Psyr_4755 0.77 +1.2 5,632,698 - Psyr_4755 0.77 +1.0 5,632,698 - Psyr_4755 0.77 -0.4 5,632,698 - Psyr_4755 0.77 +1.1 5,632,868 + +1.1 5,632,869 - +0.6 5,632,871 + -1.3 5,632,871 + +0.5 5,632,872 - -1.1 5,632,872 - -0.2 5,632,900 - +0.6 5,633,008 + -0.6 5,633,009 - -0.3 5,633,009 - +0.5 5,633,009 - -1.1 5,633,009 - -0.4 5,633,009 - -0.1 5,633,083 + Psyr_4756 0.16 -0.2 5,633,214 - Psyr_4756 0.31 -0.2 5,633,214 - Psyr_4756 0.31 +1.9 5,633,241 + Psyr_4756 0.34 -0.8 5,633,241 + Psyr_4756 0.34 -1.4 5,633,241 + Psyr_4756 0.34 -0.6 5,633,242 - Psyr_4756 0.35 -0.6 5,633,444 - Psyr_4756 0.58 -0.0 5,633,497 + Psyr_4756 0.64 -0.2 5,633,497 + Psyr_4756 0.64 +0.3 5,633,497 + Psyr_4756 0.64 +2.1 5,633,497 + Psyr_4756 0.64 -0.6 5,633,497 + Psyr_4756 0.64 -1.3 5,633,497 + Psyr_4756 0.64 +1.0 5,633,497 + Psyr_4756 0.64 -0.8 5,633,497 + Psyr_4756 0.64 -2.5 5,633,498 - Psyr_4756 0.64 -1.5 5,633,498 - Psyr_4756 0.64 -0.2 5,633,518 + Psyr_4756 0.67 -1.0 5,633,518 + Psyr_4756 0.67 -0.2 5,633,518 + Psyr_4756 0.67 -0.2 5,633,519 - Psyr_4756 0.67 +0.6 5,633,684 - Psyr_4756 0.86 +0.0
Or see this region's nucleotide sequence