Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4710

Experiment: KB with Curcumin 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4709 and Psyr_4710 are separated by 67 nucleotidesPsyr_4710 and Psyr_4711 overlap by 4 nucleotides Psyr_4709: Psyr_4709 - Substrate-binding region of ABC-type glycine betaine transport system, at 5,580,137 to 5,581,084 _4709 Psyr_4710: Psyr_4710 - Binding-protein-dependent transport systems inner membrane component, at 5,581,152 to 5,581,997 _4710 Psyr_4711: Psyr_4711 - Glycine betaine/L-proline transport ATP-binding subunit, at 5,581,994 to 5,583,172 _4711 Position (kb) 5581 5582Strain fitness (log2 ratio) -2 -1 0 1 2at 5580.178 kb on + strandat 5580.190 kb on - strandat 5580.220 kb on + strandat 5580.220 kb on + strandat 5580.220 kb on + strandat 5580.257 kb on - strand, within Psyr_4709at 5580.266 kb on - strand, within Psyr_4709at 5580.266 kb on - strand, within Psyr_4709at 5580.302 kb on + strand, within Psyr_4709at 5580.302 kb on + strand, within Psyr_4709at 5580.302 kb on + strand, within Psyr_4709at 5580.303 kb on - strand, within Psyr_4709at 5580.342 kb on - strand, within Psyr_4709at 5580.342 kb on - strand, within Psyr_4709at 5580.342 kb on - strand, within Psyr_4709at 5580.476 kb on + strand, within Psyr_4709at 5580.476 kb on + strand, within Psyr_4709at 5580.477 kb on - strand, within Psyr_4709at 5580.477 kb on - strand, within Psyr_4709at 5580.477 kb on - strand, within Psyr_4709at 5580.477 kb on - strand, within Psyr_4709at 5580.477 kb on - strand, within Psyr_4709at 5580.503 kb on + strand, within Psyr_4709at 5580.503 kb on + strand, within Psyr_4709at 5580.569 kb on + strand, within Psyr_4709at 5580.569 kb on + strand, within Psyr_4709at 5580.569 kb on + strand, within Psyr_4709at 5580.569 kb on + strand, within Psyr_4709at 5580.596 kb on - strand, within Psyr_4709at 5580.779 kb on + strand, within Psyr_4709at 5580.780 kb on - strand, within Psyr_4709at 5580.815 kb on + strand, within Psyr_4709at 5580.833 kb on + strand, within Psyr_4709at 5580.833 kb on + strand, within Psyr_4709at 5580.833 kb on + strand, within Psyr_4709at 5580.833 kb on + strand, within Psyr_4709at 5580.833 kb on + strand, within Psyr_4709at 5580.833 kb on + strand, within Psyr_4709at 5580.833 kb on + strand, within Psyr_4709at 5580.834 kb on - strand, within Psyr_4709at 5580.834 kb on - strand, within Psyr_4709at 5580.834 kb on - strand, within Psyr_4709at 5580.834 kb on - strand, within Psyr_4709at 5580.834 kb on - strand, within Psyr_4709at 5580.834 kb on - strand, within Psyr_4709at 5580.834 kb on - strand, within Psyr_4709at 5580.834 kb on - strand, within Psyr_4709at 5580.834 kb on - strand, within Psyr_4709at 5580.876 kb on + strand, within Psyr_4709at 5580.876 kb on + strand, within Psyr_4709at 5580.876 kb on + strand, within Psyr_4709at 5580.876 kb on + strand, within Psyr_4709at 5580.876 kb on + strand, within Psyr_4709at 5580.876 kb on + strand, within Psyr_4709at 5580.876 kb on + strand, within Psyr_4709at 5580.876 kb on + strand, within Psyr_4709at 5580.876 kb on + strand, within Psyr_4709at 5580.876 kb on + strand, within Psyr_4709at 5580.877 kb on - strand, within Psyr_4709at 5580.877 kb on - strand, within Psyr_4709at 5580.877 kb on - strand, within Psyr_4709at 5580.877 kb on - strand, within Psyr_4709at 5581.002 kb on + strandat 5581.002 kb on + strandat 5581.002 kb on + strandat 5581.082 kb on + strandat 5581.166 kb on + strandat 5581.166 kb on + strandat 5581.166 kb on + strandat 5581.185 kb on + strandat 5581.186 kb on - strandat 5581.186 kb on - strandat 5581.230 kb on + strandat 5581.230 kb on + strandat 5581.230 kb on + strandat 5581.231 kb on - strandat 5581.411 kb on - strand, within Psyr_4710at 5581.518 kb on + strand, within Psyr_4710at 5581.518 kb on + strand, within Psyr_4710at 5581.518 kb on + strand, within Psyr_4710at 5581.573 kb on - strand, within Psyr_4710at 5581.669 kb on - strand, within Psyr_4710at 5581.669 kb on - strand, within Psyr_4710at 5581.765 kb on - strand, within Psyr_4710at 5581.930 kb on + strandat 5581.930 kb on + strandat 5581.931 kb on - strandat 5581.931 kb on - strandat 5581.981 kb on + strandat 5581.982 kb on - strandat 5581.999 kb on + strandat 5581.999 kb on + strandat 5582.000 kb on - strandat 5582.019 kb on + strandat 5582.209 kb on + strand, within Psyr_4711at 5582.210 kb on - strand, within Psyr_4711at 5582.738 kb on + strand, within Psyr_4711at 5582.739 kb on - strand, within Psyr_4711at 5582.780 kb on + strand, within Psyr_4711at 5582.780 kb on + strand, within Psyr_4711at 5582.780 kb on + strand, within Psyr_4711at 5582.780 kb on + strand, within Psyr_4711at 5582.781 kb on - strand, within Psyr_4711at 5582.781 kb on - strand, within Psyr_4711at 5582.781 kb on - strand, within Psyr_4711at 5582.781 kb on - strand, within Psyr_4711at 5582.781 kb on - strand, within Psyr_4711at 5582.781 kb on - strand, within Psyr_4711at 5582.803 kb on + strand, within Psyr_4711at 5582.803 kb on + strand, within Psyr_4711at 5582.803 kb on + strand, within Psyr_4711at 5582.803 kb on + strand, within Psyr_4711at 5582.803 kb on + strand, within Psyr_4711at 5582.803 kb on + strand, within Psyr_4711at 5582.803 kb on + strand, within Psyr_4711at 5582.803 kb on + strand, within Psyr_4711at 5582.804 kb on - strand, within Psyr_4711at 5582.804 kb on - strand, within Psyr_4711at 5582.804 kb on - strand, within Psyr_4711at 5582.804 kb on - strand, within Psyr_4711at 5582.804 kb on - strand, within Psyr_4711at 5582.804 kb on - strand, within Psyr_4711at 5582.804 kb on - strand, within Psyr_4711at 5582.804 kb on - strand, within Psyr_4711at 5582.804 kb on - strand, within Psyr_4711at 5582.804 kb on - strand, within Psyr_4711at 5582.845 kb on + strand, within Psyr_4711

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Curcumin 10 mM
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5,580,178 + -0.9
5,580,190 - -0.8
5,580,220 + -0.3
5,580,220 + -0.5
5,580,220 + -0.0
5,580,257 - Psyr_4709 0.13 -0.5
5,580,266 - Psyr_4709 0.14 +1.2
5,580,266 - Psyr_4709 0.14 +1.0
5,580,302 + Psyr_4709 0.17 +0.3
5,580,302 + Psyr_4709 0.17 -1.2
5,580,302 + Psyr_4709 0.17 +1.7
5,580,303 - Psyr_4709 0.18 +0.2
5,580,342 - Psyr_4709 0.22 +0.4
5,580,342 - Psyr_4709 0.22 +1.1
5,580,342 - Psyr_4709 0.22 -0.5
5,580,476 + Psyr_4709 0.36 -0.8
5,580,476 + Psyr_4709 0.36 -0.1
5,580,477 - Psyr_4709 0.36 +1.0
5,580,477 - Psyr_4709 0.36 +1.6
5,580,477 - Psyr_4709 0.36 +0.0
5,580,477 - Psyr_4709 0.36 -0.2
5,580,477 - Psyr_4709 0.36 +0.1
5,580,503 + Psyr_4709 0.39 +0.0
5,580,503 + Psyr_4709 0.39 +0.5
5,580,569 + Psyr_4709 0.46 +0.7
5,580,569 + Psyr_4709 0.46 -1.4
5,580,569 + Psyr_4709 0.46 +0.5
5,580,569 + Psyr_4709 0.46 -0.0
5,580,596 - Psyr_4709 0.48 -1.0
5,580,779 + Psyr_4709 0.68 +1.4
5,580,780 - Psyr_4709 0.68 -0.1
5,580,815 + Psyr_4709 0.72 -0.2
5,580,833 + Psyr_4709 0.73 +0.2
5,580,833 + Psyr_4709 0.73 +0.4
5,580,833 + Psyr_4709 0.73 +0.1
5,580,833 + Psyr_4709 0.73 -0.6
5,580,833 + Psyr_4709 0.73 +1.7
5,580,833 + Psyr_4709 0.73 -0.5
5,580,833 + Psyr_4709 0.73 +1.5
5,580,834 - Psyr_4709 0.74 +1.1
5,580,834 - Psyr_4709 0.74 -0.6
5,580,834 - Psyr_4709 0.74 -0.2
5,580,834 - Psyr_4709 0.74 -0.2
5,580,834 - Psyr_4709 0.74 +2.3
5,580,834 - Psyr_4709 0.74 +0.2
5,580,834 - Psyr_4709 0.74 +0.7
5,580,834 - Psyr_4709 0.74 +0.1
5,580,834 - Psyr_4709 0.74 -2.2
5,580,876 + Psyr_4709 0.78 -0.9
5,580,876 + Psyr_4709 0.78 -0.3
5,580,876 + Psyr_4709 0.78 +0.3
5,580,876 + Psyr_4709 0.78 +0.1
5,580,876 + Psyr_4709 0.78 -1.2
5,580,876 + Psyr_4709 0.78 +0.2
5,580,876 + Psyr_4709 0.78 +1.1
5,580,876 + Psyr_4709 0.78 -0.8
5,580,876 + Psyr_4709 0.78 -1.4
5,580,876 + Psyr_4709 0.78 -1.7
5,580,877 - Psyr_4709 0.78 +0.8
5,580,877 - Psyr_4709 0.78 -1.3
5,580,877 - Psyr_4709 0.78 -1.8
5,580,877 - Psyr_4709 0.78 -0.6
5,581,002 + +0.1
5,581,002 + -0.6
5,581,002 + +1.3
5,581,082 + +0.3
5,581,166 + -0.3
5,581,166 + -0.8
5,581,166 + +1.0
5,581,185 + -0.4
5,581,186 - +0.3
5,581,186 - -0.2
5,581,230 + +0.7
5,581,230 + +0.0
5,581,230 + +0.7
5,581,231 - +0.8
5,581,411 - Psyr_4710 0.31 -0.2
5,581,518 + Psyr_4710 0.43 +0.0
5,581,518 + Psyr_4710 0.43 +1.0
5,581,518 + Psyr_4710 0.43 +0.5
5,581,573 - Psyr_4710 0.50 +0.6
5,581,669 - Psyr_4710 0.61 +0.2
5,581,669 - Psyr_4710 0.61 +0.1
5,581,765 - Psyr_4710 0.72 +0.6
5,581,930 + +0.2
5,581,930 + +0.1
5,581,931 - +0.4
5,581,931 - -0.3
5,581,981 + -0.4
5,581,982 - -0.1
5,581,999 + +0.7
5,581,999 + -0.6
5,582,000 - -0.7
5,582,019 + -1.3
5,582,209 + Psyr_4711 0.18 +1.1
5,582,210 - Psyr_4711 0.18 -0.8
5,582,738 + Psyr_4711 0.63 +1.8
5,582,739 - Psyr_4711 0.63 +0.7
5,582,780 + Psyr_4711 0.67 -2.6
5,582,780 + Psyr_4711 0.67 +1.3
5,582,780 + Psyr_4711 0.67 -2.4
5,582,780 + Psyr_4711 0.67 -0.8
5,582,781 - Psyr_4711 0.67 +1.3
5,582,781 - Psyr_4711 0.67 -0.4
5,582,781 - Psyr_4711 0.67 +0.7
5,582,781 - Psyr_4711 0.67 +0.0
5,582,781 - Psyr_4711 0.67 -0.0
5,582,781 - Psyr_4711 0.67 +0.1
5,582,803 + Psyr_4711 0.69 +0.7
5,582,803 + Psyr_4711 0.69 +1.1
5,582,803 + Psyr_4711 0.69 +0.5
5,582,803 + Psyr_4711 0.69 -0.6
5,582,803 + Psyr_4711 0.69 +0.2
5,582,803 + Psyr_4711 0.69 +0.0
5,582,803 + Psyr_4711 0.69 -0.6
5,582,803 + Psyr_4711 0.69 +0.4
5,582,804 - Psyr_4711 0.69 +2.7
5,582,804 - Psyr_4711 0.69 -0.2
5,582,804 - Psyr_4711 0.69 +0.2
5,582,804 - Psyr_4711 0.69 +0.5
5,582,804 - Psyr_4711 0.69 -0.1
5,582,804 - Psyr_4711 0.69 +0.5
5,582,804 - Psyr_4711 0.69 -0.7
5,582,804 - Psyr_4711 0.69 +0.4
5,582,804 - Psyr_4711 0.69 +0.2
5,582,804 - Psyr_4711 0.69 +1.3
5,582,845 + Psyr_4711 0.72 -0.8

Or see this region's nucleotide sequence