Experiment: KB with Curcumin 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4486 and Psyr_4487 are separated by 577 nucleotides Psyr_4487 and Psyr_4488 are separated by 29 nucleotides
Psyr_4486: Psyr_4486 - hypothetical protein, at 5,347,551 to 5,348,186
_4486
Psyr_4487: Psyr_4487 - Carbohydrate kinase, PfkB, at 5,348,764 to 5,349,690
_4487
Psyr_4488: Psyr_4488 - L-fucose permease, at 5,349,720 to 5,351,051
_4488
Position (kb) 5348
5349
5350 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5347.783 kb on + strand, within Psyr_4486 at 5347.783 kb on + strand, within Psyr_4486 at 5347.784 kb on - strand, within Psyr_4486 at 5347.784 kb on - strand, within Psyr_4486 at 5347.808 kb on + strand, within Psyr_4486 at 5347.809 kb on - strand, within Psyr_4486 at 5347.809 kb on - strand, within Psyr_4486 at 5347.809 kb on - strand, within Psyr_4486 at 5347.809 kb on - strand, within Psyr_4486 at 5347.811 kb on + strand, within Psyr_4486 at 5347.811 kb on + strand, within Psyr_4486 at 5347.811 kb on + strand, within Psyr_4486 at 5347.812 kb on - strand, within Psyr_4486 at 5347.812 kb on - strand, within Psyr_4486 at 5347.812 kb on - strand, within Psyr_4486 at 5347.812 kb on - strand, within Psyr_4486 at 5347.842 kb on + strand, within Psyr_4486 at 5347.871 kb on + strand, within Psyr_4486 at 5347.872 kb on - strand, within Psyr_4486 at 5347.872 kb on - strand, within Psyr_4486 at 5347.873 kb on + strand, within Psyr_4486 at 5347.873 kb on + strand, within Psyr_4486 at 5347.873 kb on + strand, within Psyr_4486 at 5347.873 kb on + strand, within Psyr_4486 at 5347.873 kb on + strand, within Psyr_4486 at 5347.873 kb on + strand, within Psyr_4486 at 5347.873 kb on + strand, within Psyr_4486 at 5347.873 kb on + strand, within Psyr_4486 at 5347.873 kb on + strand, within Psyr_4486 at 5347.873 kb on + strand, within Psyr_4486 at 5347.873 kb on + strand, within Psyr_4486 at 5347.873 kb on + strand, within Psyr_4486 at 5347.873 kb on + strand, within Psyr_4486 at 5347.873 kb on + strand, within Psyr_4486 at 5347.873 kb on + strand, within Psyr_4486 at 5347.873 kb on + strand, within Psyr_4486 at 5347.873 kb on + strand, within Psyr_4486 at 5347.874 kb on - strand, within Psyr_4486 at 5347.874 kb on - strand, within Psyr_4486 at 5347.874 kb on - strand, within Psyr_4486 at 5347.874 kb on - strand, within Psyr_4486 at 5347.874 kb on - strand, within Psyr_4486 at 5347.874 kb on - strand, within Psyr_4486 at 5347.874 kb on - strand, within Psyr_4486 at 5347.874 kb on - strand, within Psyr_4486 at 5347.874 kb on - strand, within Psyr_4486 at 5347.874 kb on - strand, within Psyr_4486 at 5347.895 kb on - strand, within Psyr_4486 at 5348.007 kb on + strand, within Psyr_4486 at 5348.008 kb on - strand, within Psyr_4486 at 5348.008 kb on - strand, within Psyr_4486 at 5348.038 kb on + strand, within Psyr_4486 at 5348.077 kb on + strand, within Psyr_4486 at 5348.077 kb on + strand, within Psyr_4486 at 5348.077 kb on + strand, within Psyr_4486 at 5348.077 kb on + strand, within Psyr_4486 at 5348.078 kb on - strand, within Psyr_4486 at 5348.078 kb on - strand, within Psyr_4486 at 5348.078 kb on - strand, within Psyr_4486 at 5348.124 kb on - strand at 5348.206 kb on + strand at 5348.253 kb on + strand at 5348.253 kb on + strand at 5348.261 kb on - strand at 5348.271 kb on + strand at 5348.355 kb on + strand at 5348.355 kb on + strand at 5348.355 kb on + strand at 5348.356 kb on - strand at 5348.404 kb on - strand at 5348.404 kb on - strand at 5348.410 kb on + strand at 5348.423 kb on - strand at 5348.465 kb on + strand at 5348.465 kb on + strand at 5348.466 kb on - strand at 5348.466 kb on - strand at 5348.477 kb on + strand at 5348.477 kb on + strand at 5348.477 kb on + strand at 5348.477 kb on + strand at 5348.477 kb on + strand at 5348.477 kb on + strand at 5348.477 kb on + strand at 5348.477 kb on + strand at 5348.478 kb on - strand at 5348.478 kb on - strand at 5348.478 kb on - strand at 5348.478 kb on - strand at 5348.478 kb on - strand at 5348.478 kb on - strand at 5348.478 kb on - strand at 5348.478 kb on - strand at 5348.481 kb on + strand at 5348.481 kb on + strand at 5348.481 kb on + strand at 5348.481 kb on + strand at 5348.481 kb on + strand at 5348.481 kb on + strand at 5348.481 kb on + strand at 5348.482 kb on - strand at 5348.482 kb on - strand at 5348.482 kb on - strand at 5348.759 kb on + strand at 5348.759 kb on + strand at 5348.759 kb on + strand at 5348.759 kb on + strand at 5348.759 kb on + strand at 5348.759 kb on + strand at 5348.759 kb on + strand at 5348.759 kb on + strand at 5348.760 kb on - strand at 5348.760 kb on - strand at 5348.760 kb on - strand at 5348.760 kb on - strand at 5348.760 kb on - strand at 5348.760 kb on - strand at 5348.760 kb on - strand at 5348.760 kb on - strand at 5348.760 kb on - strand at 5348.760 kb on - strand at 5348.760 kb on - strand at 5348.812 kb on + strand at 5348.812 kb on + strand at 5348.812 kb on + strand at 5348.813 kb on - strand at 5348.813 kb on - strand at 5348.813 kb on - strand at 5348.813 kb on - strand at 5348.813 kb on - strand at 5348.813 kb on - strand at 5348.813 kb on - strand at 5348.813 kb on - strand at 5349.075 kb on + strand, within Psyr_4487 at 5349.449 kb on - strand, within Psyr_4487 at 5349.449 kb on - strand, within Psyr_4487 at 5349.449 kb on - strand, within Psyr_4487 at 5349.449 kb on - strand, within Psyr_4487 at 5349.599 kb on - strand at 5349.718 kb on + strand at 5349.718 kb on + strand at 5349.719 kb on - strand at 5349.725 kb on + strand at 5349.725 kb on + strand at 5349.725 kb on + strand at 5349.725 kb on + strand at 5349.726 kb on - strand at 5349.726 kb on - strand at 5349.726 kb on - strand at 5349.726 kb on - strand at 5349.759 kb on + strand at 5349.805 kb on + strand at 5349.805 kb on + strand at 5349.805 kb on + strand at 5349.805 kb on + strand at 5349.805 kb on + strand at 5349.806 kb on - strand at 5349.806 kb on - strand at 5349.806 kb on - strand at 5349.806 kb on - strand at 5349.915 kb on + strand, within Psyr_4488 at 5349.916 kb on - strand, within Psyr_4488 at 5349.924 kb on + strand, within Psyr_4488 at 5349.972 kb on + strand, within Psyr_4488 at 5349.972 kb on + strand, within Psyr_4488 at 5349.972 kb on + strand, within Psyr_4488 at 5349.973 kb on - strand, within Psyr_4488 at 5349.973 kb on - strand, within Psyr_4488 at 5349.973 kb on - strand, within Psyr_4488 at 5349.973 kb on - strand, within Psyr_4488 at 5350.005 kb on + strand, within Psyr_4488 at 5350.005 kb on + strand, within Psyr_4488 at 5350.006 kb on - strand, within Psyr_4488 at 5350.006 kb on - strand, within Psyr_4488 at 5350.006 kb on - strand, within Psyr_4488 at 5350.053 kb on + strand, within Psyr_4488 at 5350.053 kb on + strand, within Psyr_4488 at 5350.054 kb on - strand, within Psyr_4488 at 5350.054 kb on - strand, within Psyr_4488 at 5350.125 kb on + strand, within Psyr_4488 at 5350.125 kb on + strand, within Psyr_4488 at 5350.125 kb on + strand, within Psyr_4488 at 5350.125 kb on + strand, within Psyr_4488 at 5350.126 kb on - strand, within Psyr_4488 at 5350.215 kb on + strand, within Psyr_4488 at 5350.215 kb on + strand, within Psyr_4488 at 5350.215 kb on + strand, within Psyr_4488 at 5350.215 kb on + strand, within Psyr_4488 at 5350.215 kb on + strand, within Psyr_4488 at 5350.215 kb on + strand, within Psyr_4488 at 5350.216 kb on - strand, within Psyr_4488 at 5350.216 kb on - strand, within Psyr_4488 at 5350.216 kb on - strand, within Psyr_4488 at 5350.216 kb on - strand, within Psyr_4488 at 5350.216 kb on - strand, within Psyr_4488 at 5350.216 kb on - strand, within Psyr_4488 at 5350.216 kb on - strand, within Psyr_4488 at 5350.216 kb on - strand, within Psyr_4488 at 5350.335 kb on + strand, within Psyr_4488 at 5350.336 kb on - strand, within Psyr_4488 at 5350.360 kb on + strand, within Psyr_4488 at 5350.360 kb on + strand, within Psyr_4488 at 5350.360 kb on + strand, within Psyr_4488 at 5350.360 kb on + strand, within Psyr_4488 at 5350.360 kb on + strand, within Psyr_4488 at 5350.361 kb on - strand, within Psyr_4488 at 5350.361 kb on - strand, within Psyr_4488 at 5350.361 kb on - strand, within Psyr_4488 at 5350.379 kb on - strand, within Psyr_4488 at 5350.509 kb on + strand, within Psyr_4488 at 5350.509 kb on + strand, within Psyr_4488 at 5350.510 kb on - strand, within Psyr_4488 at 5350.510 kb on - strand, within Psyr_4488 at 5350.510 kb on - strand, within Psyr_4488 at 5350.510 kb on - strand, within Psyr_4488 at 5350.544 kb on + strand, within Psyr_4488 at 5350.620 kb on + strand, within Psyr_4488 at 5350.621 kb on - strand, within Psyr_4488 at 5350.689 kb on + strand, within Psyr_4488 at 5350.689 kb on + strand, within Psyr_4488 at 5350.689 kb on + strand, within Psyr_4488 at 5350.689 kb on + strand, within Psyr_4488 at 5350.689 kb on + strand, within Psyr_4488
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Curcumin 10 mM remove 5,347,783 + Psyr_4486 0.36 -3.0 5,347,783 + Psyr_4486 0.36 +0.2 5,347,784 - Psyr_4486 0.37 +0.5 5,347,784 - Psyr_4486 0.37 -0.3 5,347,808 + Psyr_4486 0.40 +0.1 5,347,809 - Psyr_4486 0.41 +0.6 5,347,809 - Psyr_4486 0.41 -2.0 5,347,809 - Psyr_4486 0.41 -0.8 5,347,809 - Psyr_4486 0.41 +1.0 5,347,811 + Psyr_4486 0.41 -0.2 5,347,811 + Psyr_4486 0.41 -0.2 5,347,811 + Psyr_4486 0.41 -0.1 5,347,812 - Psyr_4486 0.41 +0.1 5,347,812 - Psyr_4486 0.41 -0.1 5,347,812 - Psyr_4486 0.41 +0.7 5,347,812 - Psyr_4486 0.41 -2.5 5,347,842 + Psyr_4486 0.46 -1.3 5,347,871 + Psyr_4486 0.50 -1.7 5,347,872 - Psyr_4486 0.50 +0.2 5,347,872 - Psyr_4486 0.50 -2.6 5,347,873 + Psyr_4486 0.51 +2.0 5,347,873 + Psyr_4486 0.51 -0.3 5,347,873 + Psyr_4486 0.51 -0.3 5,347,873 + Psyr_4486 0.51 +0.4 5,347,873 + Psyr_4486 0.51 -2.4 5,347,873 + Psyr_4486 0.51 -0.1 5,347,873 + Psyr_4486 0.51 +0.5 5,347,873 + Psyr_4486 0.51 +0.2 5,347,873 + Psyr_4486 0.51 -0.2 5,347,873 + Psyr_4486 0.51 +0.4 5,347,873 + Psyr_4486 0.51 +0.4 5,347,873 + Psyr_4486 0.51 +0.6 5,347,873 + Psyr_4486 0.51 -1.2 5,347,873 + Psyr_4486 0.51 -0.1 5,347,873 + Psyr_4486 0.51 +0.0 5,347,873 + Psyr_4486 0.51 +2.0 5,347,873 + Psyr_4486 0.51 -1.0 5,347,874 - Psyr_4486 0.51 -0.4 5,347,874 - Psyr_4486 0.51 +0.7 5,347,874 - Psyr_4486 0.51 -0.3 5,347,874 - Psyr_4486 0.51 -1.8 5,347,874 - Psyr_4486 0.51 +0.8 5,347,874 - Psyr_4486 0.51 -2.9 5,347,874 - Psyr_4486 0.51 -0.1 5,347,874 - Psyr_4486 0.51 +0.1 5,347,874 - Psyr_4486 0.51 +1.3 5,347,874 - Psyr_4486 0.51 +0.1 5,347,895 - Psyr_4486 0.54 +2.2 5,348,007 + Psyr_4486 0.72 +0.7 5,348,008 - Psyr_4486 0.72 -0.2 5,348,008 - Psyr_4486 0.72 +2.6 5,348,038 + Psyr_4486 0.77 -1.4 5,348,077 + Psyr_4486 0.83 +2.4 5,348,077 + Psyr_4486 0.83 +0.1 5,348,077 + Psyr_4486 0.83 +1.0 5,348,077 + Psyr_4486 0.83 +0.0 5,348,078 - Psyr_4486 0.83 -1.3 5,348,078 - Psyr_4486 0.83 -0.7 5,348,078 - Psyr_4486 0.83 +0.2 5,348,124 - -0.0 5,348,206 + -0.6 5,348,253 + -0.6 5,348,253 + +0.9 5,348,261 - -0.2 5,348,271 + +0.2 5,348,355 + +0.9 5,348,355 + +0.5 5,348,355 + +0.4 5,348,356 - -0.3 5,348,404 - -2.2 5,348,404 - +0.1 5,348,410 + -0.5 5,348,423 - -0.8 5,348,465 + +0.1 5,348,465 + -0.1 5,348,466 - +1.0 5,348,466 - -0.7 5,348,477 + +0.0 5,348,477 + -1.2 5,348,477 + -0.3 5,348,477 + +0.5 5,348,477 + -0.7 5,348,477 + +1.9 5,348,477 + +0.0 5,348,477 + +0.1 5,348,478 - +0.4 5,348,478 - +0.7 5,348,478 - +0.2 5,348,478 - +0.7 5,348,478 - +1.8 5,348,478 - -1.6 5,348,478 - -1.1 5,348,478 - +0.2 5,348,481 + -0.7 5,348,481 + -0.2 5,348,481 + +0.0 5,348,481 + +0.4 5,348,481 + +1.2 5,348,481 + -0.5 5,348,481 + +0.4 5,348,482 - -0.2 5,348,482 - +1.2 5,348,482 - +0.2 5,348,759 + +0.2 5,348,759 + +0.0 5,348,759 + +0.8 5,348,759 + +2.4 5,348,759 + +0.4 5,348,759 + -1.8 5,348,759 + -0.9 5,348,759 + -0.3 5,348,760 - +0.8 5,348,760 - -1.3 5,348,760 - -0.4 5,348,760 - +2.6 5,348,760 - +0.1 5,348,760 - +0.4 5,348,760 - -1.4 5,348,760 - +0.6 5,348,760 - +0.3 5,348,760 - +1.7 5,348,760 - -0.4 5,348,812 + +1.6 5,348,812 + -0.2 5,348,812 + -0.1 5,348,813 - +0.7 5,348,813 - +1.1 5,348,813 - -0.6 5,348,813 - -1.0 5,348,813 - -0.2 5,348,813 - +0.7 5,348,813 - +0.5 5,348,813 - +0.6 5,349,075 + Psyr_4487 0.34 -0.9 5,349,449 - Psyr_4487 0.74 +2.0 5,349,449 - Psyr_4487 0.74 +0.8 5,349,449 - Psyr_4487 0.74 +1.8 5,349,449 - Psyr_4487 0.74 +0.7 5,349,599 - -1.1 5,349,718 + +1.3 5,349,718 + -0.1 5,349,719 - +0.1 5,349,725 + -2.3 5,349,725 + -0.9 5,349,725 + -0.4 5,349,725 + -0.6 5,349,726 - +0.0 5,349,726 - +0.6 5,349,726 - +2.8 5,349,726 - -0.8 5,349,759 + -1.1 5,349,805 + +0.4 5,349,805 + +0.0 5,349,805 + +1.5 5,349,805 + -1.5 5,349,805 + -1.1 5,349,806 - -0.8 5,349,806 - +0.5 5,349,806 - -0.8 5,349,806 - -0.8 5,349,915 + Psyr_4488 0.15 +1.1 5,349,916 - Psyr_4488 0.15 +0.4 5,349,924 + Psyr_4488 0.15 +0.9 5,349,972 + Psyr_4488 0.19 +0.4 5,349,972 + Psyr_4488 0.19 +0.1 5,349,972 + Psyr_4488 0.19 -1.8 5,349,973 - Psyr_4488 0.19 -0.2 5,349,973 - Psyr_4488 0.19 -2.2 5,349,973 - Psyr_4488 0.19 +0.5 5,349,973 - Psyr_4488 0.19 +1.0 5,350,005 + Psyr_4488 0.21 +0.5 5,350,005 + Psyr_4488 0.21 +3.6 5,350,006 - Psyr_4488 0.21 -0.3 5,350,006 - Psyr_4488 0.21 +0.2 5,350,006 - Psyr_4488 0.21 -0.5 5,350,053 + Psyr_4488 0.25 +2.0 5,350,053 + Psyr_4488 0.25 +1.0 5,350,054 - Psyr_4488 0.25 -1.3 5,350,054 - Psyr_4488 0.25 +3.3 5,350,125 + Psyr_4488 0.30 +1.6 5,350,125 + Psyr_4488 0.30 -0.3 5,350,125 + Psyr_4488 0.30 -0.3 5,350,125 + Psyr_4488 0.30 -0.5 5,350,126 - Psyr_4488 0.30 +0.0 5,350,215 + Psyr_4488 0.37 +0.2 5,350,215 + Psyr_4488 0.37 -0.7 5,350,215 + Psyr_4488 0.37 +0.0 5,350,215 + Psyr_4488 0.37 -0.7 5,350,215 + Psyr_4488 0.37 +1.5 5,350,215 + Psyr_4488 0.37 +0.4 5,350,216 - Psyr_4488 0.37 +0.3 5,350,216 - Psyr_4488 0.37 +1.1 5,350,216 - Psyr_4488 0.37 -0.3 5,350,216 - Psyr_4488 0.37 +0.2 5,350,216 - Psyr_4488 0.37 +0.1 5,350,216 - Psyr_4488 0.37 +0.1 5,350,216 - Psyr_4488 0.37 -0.4 5,350,216 - Psyr_4488 0.37 +1.0 5,350,335 + Psyr_4488 0.46 +1.2 5,350,336 - Psyr_4488 0.46 -1.3 5,350,360 + Psyr_4488 0.48 +0.0 5,350,360 + Psyr_4488 0.48 -0.1 5,350,360 + Psyr_4488 0.48 -1.1 5,350,360 + Psyr_4488 0.48 +2.5 5,350,360 + Psyr_4488 0.48 +0.6 5,350,361 - Psyr_4488 0.48 +0.6 5,350,361 - Psyr_4488 0.48 +0.2 5,350,361 - Psyr_4488 0.48 -0.7 5,350,379 - Psyr_4488 0.49 +1.0 5,350,509 + Psyr_4488 0.59 +0.5 5,350,509 + Psyr_4488 0.59 +0.1 5,350,510 - Psyr_4488 0.59 +1.9 5,350,510 - Psyr_4488 0.59 +0.5 5,350,510 - Psyr_4488 0.59 -1.0 5,350,510 - Psyr_4488 0.59 -0.6 5,350,544 + Psyr_4488 0.62 +4.3 5,350,620 + Psyr_4488 0.68 -1.1 5,350,621 - Psyr_4488 0.68 -1.0 5,350,689 + Psyr_4488 0.73 +0.4 5,350,689 + Psyr_4488 0.73 -0.3 5,350,689 + Psyr_4488 0.73 -0.8 5,350,689 + Psyr_4488 0.73 +0.2 5,350,689 + Psyr_4488 0.73 -0.6
Or see this region's nucleotide sequence